Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39068 * 120.00301 * 179.97438 * 2 1 3 5 5 C 1.39451 * 120.40197 * 359.97438 * 4 2 1 6 6 C 1.38224 * 118.43118 * 179.97438 * 5 4 2 7 7 C 1.39533 * 119.15777 * 359.97438 * 6 5 4 8 8 C 1.47845 * 119.63852 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99669 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47509 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47395 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47149 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00202 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99598 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47306 * 59.99697 * 18 16 14 20 20 H 1.48492 * 109.46968 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46751 * 299.99599 * 18 16 14 22 22 N 1.32833 * 120.72633 * 0.02562 * 7 6 5 23 23 C 1.31323 * 121.71734 * 359.72400 * 22 7 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08002 * 120.78078 * 359.95664 * 5 4 2 31 31 H 1.08000 * 120.42378 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99497 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47072 * 300.00549 * 11 10 8 34 34 H 1.09002 * 109.46744 * 59.99933 * 11 10 8 35 35 H 1.09005 * 109.46878 * 300.00589 * 12 11 10 36 36 H 1.08999 * 109.47074 * 59.99385 * 12 11 10 37 37 H 1.09001 * 109.46996 * 299.99962 * 13 12 11 38 38 H 1.09007 * 109.46905 * 59.99888 * 13 12 11 39 39 H 0.97000 * 120.00367 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.61977 * 180.26876 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2043 0.0005 5 6 1.4717 -2.4169 0.0016 6 6 2.2036 -3.5894 0.0016 7 6 3.5973 -3.5209 -0.0001 8 6 4.3907 -4.7684 -0.0007 9 8 3.8284 -5.8462 0.0007 10 7 5.7371 -4.7108 -0.0028 11 6 6.5233 -5.9470 -0.0029 12 6 8.0142 -5.6033 -0.0049 13 6 8.8352 -6.8944 -0.0056 14 6 10.3036 -6.5559 -0.0081 15 1 10.6197 -5.5231 -0.0096 16 6 11.2437 -7.5645 -0.0097 17 7 10.8587 -8.8221 -0.0085 18 14 13.0639 -7.1449 -0.0122 19 1 13.3907 -6.3518 1.2000 20 1 13.8607 -8.3980 -0.0142 21 1 13.3872 -6.3513 -1.2250 22 7 4.2190 -2.3471 -0.0011 23 6 3.5551 -1.2141 -0.0060 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3919 -2.4393 0.0028 31 1 1.7032 -4.5465 0.0028 32 1 6.1857 -3.8507 -0.0036 33 1 6.2860 -6.5285 0.8880 34 1 6.2833 -6.5301 -0.8920 35 1 8.2517 -5.0215 -0.8955 36 1 8.2538 -5.0203 0.8844 37 1 8.5977 -7.4765 0.8849 38 1 8.5954 -7.4770 -0.8952 39 1 11.5200 -9.5317 -0.0092 40 1 4.0952 -0.2789 -0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444175483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -28.511260 kcal Electronic energy + Delta-G solvation = -20121.375148 eV Core-core repulsion = 16934.813217 eV Total energy + Delta-G solvation = -3186.561932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65032 -40.21934 -37.73785 -36.96674 -35.20036 -33.43832 -32.98089 -31.54769 -29.28190 -28.71050 -26.69933 -24.95091 -24.28592 -22.96196 -22.29109 -21.39590 -19.14677 -18.49674 -18.12062 -17.60708 -16.77228 -16.70079 -16.37170 -16.17281 -15.91371 -15.49314 -15.20059 -15.11141 -14.33099 -14.29806 -14.14057 -13.76501 -13.65589 -13.46964 -13.42947 -13.04990 -12.70951 -12.62146 -12.54831 -12.40695 -11.67643 -11.65440 -11.41934 -11.29822 -11.13992 -10.64920 -10.53856 -10.53238 -10.10731 -8.45112 -8.18250 -6.29914 -0.17592 0.30274 1.41986 1.45753 1.53541 1.76719 2.01992 2.20606 2.43913 2.93352 3.14940 3.28165 3.74718 3.76757 4.01900 4.08690 4.18255 4.20581 4.29744 4.46816 4.52654 4.55231 4.72767 4.77147 4.87632 4.90514 4.93662 4.95506 4.99460 5.10635 5.16731 5.39561 5.43501 5.52875 5.70910 5.84498 6.09557 6.19295 6.23385 6.48638 6.86381 6.89908 7.21247 7.39188 8.93755 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.002568 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.014584 B =10901.499491 C =11642.159483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.617 5.617 3 C 0.077 3.923 4 C 0.196 3.804 5 C -0.170 4.170 6 C -0.059 4.059 7 C -0.022 4.022 8 C 0.567 3.433 9 O -0.585 6.585 10 N -0.703 5.703 11 C 0.128 3.872 12 C -0.101 4.101 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.265 1.265 22 N -0.430 5.430 23 C 0.021 3.979 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.416 0.584 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.066 0.934 37 H -0.006 1.006 38 H -0.006 1.006 39 H 0.264 0.736 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.239 25.075 -0.103 34.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.324 5.324 3 C -0.065 4.065 4 C 0.086 3.914 5 C -0.200 4.200 6 C -0.081 4.081 7 C -0.159 4.159 8 C 0.355 3.645 9 O -0.466 6.466 10 N -0.353 5.353 11 C 0.005 3.995 12 C -0.139 4.139 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.190 1.190 22 N -0.141 5.141 23 C -0.147 4.147 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.183 0.817 31 H 0.161 0.839 32 H 0.254 0.746 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.751 24.311 -0.100 33.296 hybrid contribution 0.305 -0.243 0.018 0.390 sum -22.446 24.067 -0.082 32.910 Atomic orbital electron populations 1.21968 0.77327 1.04753 1.02095 1.46629 1.06651 1.02903 1.76240 1.22055 0.97970 0.83752 1.02722 1.19195 0.92808 0.87711 0.91697 1.21248 1.01630 0.89546 1.07530 1.21905 0.92748 1.00366 0.93078 1.20450 0.92218 0.90940 1.12323 1.18291 0.82398 0.88171 0.75676 1.90728 1.71853 1.30881 1.53163 1.45863 1.05717 1.10637 1.73071 1.21316 0.91178 0.86085 1.00947 1.21597 0.91197 0.99149 1.01984 1.18936 0.94266 0.92893 0.95174 1.21644 0.92421 0.93317 1.50671 0.91647 1.26047 1.04586 0.94815 0.94731 1.70108 1.35801 1.00009 1.51566 0.85436 0.78424 0.77523 0.79266 1.19022 1.21024 1.19029 1.67252 1.41244 0.97994 1.07600 1.22830 0.89967 0.96594 1.05280 0.88078 0.91930 0.91842 0.91912 0.90555 0.88791 0.81713 0.83941 0.74639 0.92851 0.92836 0.91578 0.91575 0.98805 0.98807 0.92775 0.79893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 9.42 127.77 1.20 1.53 16 2 N -0.62 -5.50 3.39 -746.74 -2.53 -8.03 16 3 C 0.08 0.31 10.17 127.77 1.30 1.61 16 4 C 0.20 3.04 6.57 38.58 0.25 3.29 16 5 C -0.17 -2.86 9.40 22.56 0.21 -2.65 16 6 C -0.06 -1.42 9.62 22.58 0.22 -1.20 16 7 C -0.02 -0.63 6.74 41.85 0.28 -0.35 16 8 C 0.57 20.50 7.80 86.79 0.68 21.17 16 9 O -0.59 -24.79 16.31 -3.91 -0.06 -24.86 16 10 N -0.70 -24.54 5.54 -465.98 -2.58 -27.12 16 11 C 0.13 5.11 5.67 86.38 0.49 5.60 16 12 C -0.10 -4.29 5.27 30.59 0.16 -4.13 16 13 C 0.03 1.36 4.97 29.85 0.15 1.51 16 14 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 15 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 17 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 18 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 N -0.43 -11.10 9.52 -184.38 -1.75 -12.86 16 23 C 0.02 0.40 10.38 85.07 0.88 1.28 16 24 H 0.10 -0.03 7.79 -2.39 -0.02 -0.05 16 25 H 0.06 0.25 7.97 -2.39 -0.02 0.23 16 26 H 0.06 0.24 7.98 -2.38 -0.02 0.22 16 27 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.08 0.31 6.19 -2.39 -0.01 0.29 16 29 H 0.09 0.02 7.92 -2.38 -0.02 0.00 16 30 H 0.17 1.75 6.85 -2.91 -0.02 1.73 16 31 H 0.14 3.42 7.63 -2.91 -0.02 3.39 16 32 H 0.42 12.89 7.79 -92.71 -0.72 12.16 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.18 2.28 6.14 -2.91 -0.02 2.26 16 Total: -1.00 -76.21 338.79 2.22 -73.99 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.32 Total: 13.30 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 6.52 Total: -3.25 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -6.59 Total: -106.08 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -76.21 2.22 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444175483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.478 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds