Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99685 * 2 1 4 4 C 1.53002 * 109.47294 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46854 * 64.99397 * 4 3 2 6 6 C 1.36930 * 120.00370 * 264.85135 * 5 4 3 7 7 H 1.08001 * 120.00123 * 146.20345 * 6 5 4 8 8 C 1.38814 * 120.00052 * 326.19702 * 6 5 4 9 9 N 1.31619 * 119.99992 * 337.55507 * 8 6 5 10 10 Si 1.86794 * 120.00137 * 157.54879 * 8 6 5 11 11 H 1.48501 * 109.47340 * 60.00199 * 10 8 6 12 12 H 1.48500 * 109.47184 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47229 * 300.00420 * 10 8 6 14 14 C 1.46509 * 119.99484 * 84.85121 * 5 4 3 15 15 C 1.52998 * 109.46878 * 90.00167 * 14 5 4 16 16 C 1.53003 * 109.46873 * 175.00071 * 15 14 5 17 17 C 1.52997 * 109.47196 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47274 * 299.99638 * 17 16 15 19 19 F 1.39896 * 109.46859 * 300.00265 * 18 17 16 20 20 F 1.39900 * 109.47135 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46714 * 60.00066 * 18 17 16 22 22 C 1.52997 * 109.47196 * 299.99981 * 21 18 17 23 23 H 1.08997 * 109.47262 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.47036 * 60.00301 * 1 2 3 25 25 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47391 * 59.99987 * 3 2 1 27 27 H 1.09006 * 109.47006 * 299.99792 * 3 2 1 28 28 H 1.08997 * 109.46976 * 305.00214 * 4 3 2 29 29 H 1.08994 * 109.47838 * 184.99630 * 4 3 2 30 30 H 0.97002 * 120.00567 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47107 * 329.99886 * 14 5 4 32 32 H 1.09003 * 109.46805 * 209.99633 * 14 5 4 33 33 H 1.08996 * 109.47318 * 54.99888 * 15 14 5 34 34 H 1.08998 * 109.46743 * 299.99627 * 16 15 14 35 35 H 1.08996 * 109.47298 * 59.99804 * 16 15 14 36 36 H 1.09009 * 109.47318 * 59.99793 * 17 16 15 37 37 H 1.09001 * 109.47510 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46743 * 180.02562 * 21 18 17 39 39 H 1.08996 * 109.47298 * 59.99982 * 21 18 17 40 40 H 1.09009 * 109.47318 * 300.00207 * 22 21 18 41 41 H 1.09001 * 109.47510 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1994 -0.7861 -1.3042 7 1 3.9885 -1.3328 -2.2115 8 6 4.6965 -1.4520 -0.1923 9 7 5.3582 -0.7876 0.7313 10 14 4.4260 -3.2909 -0.0067 11 1 5.0437 -4.0006 -1.1556 12 1 5.0497 -3.7579 1.2575 13 1 2.9689 -3.5762 0.0259 14 6 4.1795 1.3877 -2.4454 15 6 5.6255 1.8863 -2.4814 16 6 5.8720 2.6416 -3.7889 17 6 7.3178 3.1408 -3.8248 18 6 7.5633 4.0780 -2.6405 19 9 6.6911 5.1688 -2.7205 20 9 8.8855 4.5340 -2.6729 21 6 7.3168 3.3227 -1.3329 22 6 5.8710 2.8234 -1.2971 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8901 28 1 3.8507 0.5686 0.8427 29 1 3.9784 2.1766 0.0901 30 1 5.7053 -1.2528 1.5085 31 1 3.5015 2.2407 -2.4179 32 1 3.9783 0.7921 -3.3358 33 1 6.3047 1.0361 -2.4193 34 1 5.6967 1.9741 -4.6326 35 1 5.1928 3.4918 -3.8511 36 1 7.9974 2.2908 -3.7624 37 1 7.4936 3.6785 -4.7565 38 1 7.4912 3.9904 -0.4893 39 1 7.9962 2.4727 -1.2706 40 1 5.1914 3.6735 -1.3594 41 1 5.6952 2.2857 -0.3654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459540436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = -143.356073 kcal Electronic energy + Delta-G solvation = -23308.860574 eV Core-core repulsion = 19666.629412 eV Total energy + Delta-G solvation = -3642.231163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.72476 -46.71662 -38.04909 -36.97116 -34.92784 -31.59267 -30.83292 -30.08528 -28.31320 -25.68057 -25.06078 -23.30456 -22.56010 -21.39192 -19.88626 -19.40871 -17.10541 -16.68552 -16.43478 -15.95388 -15.68432 -15.06272 -14.69473 -14.18077 -14.00356 -13.92157 -13.78124 -13.45428 -13.17837 -13.06100 -12.80153 -12.49975 -12.06127 -11.97280 -11.77449 -11.52860 -11.24737 -10.95703 -10.92855 -10.78100 -10.68121 -10.64281 -10.36452 -10.10552 -9.93759 -9.67573 -9.63565 -9.44628 -8.82595 -8.34849 -6.53522 -5.69782 -3.18969 3.46194 3.51569 3.57953 4.03185 4.38965 4.59029 4.62628 4.66624 4.70204 5.22818 5.38434 5.44266 5.51874 5.53440 5.68874 5.71777 5.75443 5.80098 5.84271 5.98246 6.06413 6.13441 6.14397 6.25447 6.26615 6.32869 6.38755 6.49448 6.57420 6.66662 6.77643 6.86982 7.05140 7.20299 7.70629 7.90245 8.08176 8.60801 9.27356 9.92765 10.46285 11.32994 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.005580 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.013477 B = 5016.785726 C = 5744.724681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.574 5.574 6 C -0.237 4.237 7 H 0.057 0.943 8 C 0.015 3.985 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.283 1.283 14 C 0.154 3.846 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.153 4.153 18 C 0.285 3.715 19 F -0.204 7.204 20 F -0.212 7.212 21 C -0.153 4.153 22 C -0.108 4.108 23 H 0.026 0.974 24 H 0.028 0.972 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.252 0.748 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 8.133 -4.828 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.035 4.035 4 C 0.010 3.990 5 N -0.293 5.293 6 C -0.367 4.367 7 H 0.074 0.926 8 C -0.184 4.184 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.209 1.209 14 C 0.027 3.973 15 C -0.130 4.130 16 C -0.152 4.152 17 C -0.191 4.191 18 C 0.249 3.751 19 F -0.185 7.185 20 F -0.193 7.193 21 C -0.191 4.191 22 C -0.146 4.146 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.126 0.874 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.398 7.931 -4.682 9.219 hybrid contribution -0.285 -0.453 0.156 0.558 sum -0.683 7.477 -4.526 8.767 Atomic orbital electron populations 1.22629 0.84287 1.01440 0.98389 1.88207 1.16542 1.27836 1.94821 1.23469 0.99268 0.84016 0.96762 1.21203 0.87105 0.97203 0.93528 1.43690 1.75535 1.04077 1.06036 1.18866 1.35882 0.82663 0.99306 0.92567 1.24897 0.97034 0.97420 0.99064 1.69925 1.36210 1.35387 1.12260 0.86496 0.78182 0.86098 0.76677 1.21265 1.22011 1.20925 1.20899 0.91657 0.93423 0.91308 1.21898 1.02042 0.97418 0.91606 1.21593 0.93426 1.00328 0.99832 1.22480 1.00981 0.99382 0.96263 1.21292 0.71441 0.82485 0.99835 1.92951 1.69804 1.58174 1.97563 1.92964 1.37799 1.90736 1.97778 1.22521 1.01725 1.00769 0.94057 1.21618 0.92257 0.98718 1.01959 0.95547 0.95327 0.90766 0.95808 0.95583 0.87408 0.93785 0.93801 0.94963 0.93799 0.90225 0.91079 0.91760 0.89053 0.90535 0.90500 0.88964 0.92690 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.81 10.42 -35.23 -0.37 -8.18 16 3 C 0.04 0.88 6.28 37.16 0.23 1.11 16 4 C 0.14 3.03 4.87 -4.04 -0.02 3.01 16 5 N -0.57 -13.27 2.24 -173.23 -0.39 -13.66 16 6 C -0.24 -6.24 9.26 -15.06 -0.14 -6.38 16 7 H 0.06 1.51 7.92 -52.49 -0.42 1.09 16 8 C 0.01 0.40 4.92 -17.43 -0.09 0.31 16 9 N -0.89 -24.62 11.34 55.49 0.63 -23.99 16 10 Si 0.90 21.88 29.61 -169.99 -5.03 16.84 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.15 2.98 5.17 -4.04 -0.02 2.96 16 15 C -0.11 -1.88 2.40 -90.62 -0.22 -2.10 16 16 C -0.11 -1.60 5.08 -26.73 -0.14 -1.74 16 17 C -0.15 -2.03 5.45 -26.73 -0.15 -2.17 16 18 C 0.29 4.22 2.10 -26.73 -0.06 4.16 16 19 F -0.20 -3.21 16.02 2.25 0.04 -3.17 16 20 F -0.21 -3.26 17.06 2.25 0.04 -3.22 16 21 C -0.15 -2.33 5.45 -26.73 -0.15 -2.48 16 22 C -0.11 -1.84 4.10 -26.73 -0.11 -1.95 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 2.79 5.34 -51.93 -0.28 2.52 16 29 H 0.04 0.90 5.76 -51.93 -0.30 0.60 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.04 0.85 8.04 -51.93 -0.42 0.44 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 36 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.05 0.90 7.80 -51.92 -0.41 0.49 16 41 H 0.10 1.98 5.79 -51.93 -0.30 1.68 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -28.15 328.50 -6.59 -34.73 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.73 Total: -0.64 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 0.27 Total: -3.65 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.24 Total: -37.65 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.37 Total: -8.18 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.07 Total: -6.40 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.15 -6.59 -34.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.621 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds