Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99685 * 2 1 4 4 C 1.53002 * 109.47294 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46854 * 64.99397 * 4 3 2 6 6 C 1.36930 * 120.00370 * 264.85135 * 5 4 3 7 7 H 1.08001 * 120.00123 * 146.20345 * 6 5 4 8 8 C 1.38814 * 120.00052 * 326.19702 * 6 5 4 9 9 N 1.31619 * 119.99992 * 337.55507 * 8 6 5 10 10 Si 1.86794 * 120.00137 * 157.54879 * 8 6 5 11 11 H 1.48501 * 109.47340 * 60.00199 * 10 8 6 12 12 H 1.48500 * 109.47184 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47229 * 300.00420 * 10 8 6 14 14 C 1.46509 * 119.99484 * 84.85121 * 5 4 3 15 15 C 1.52998 * 109.46878 * 90.00167 * 14 5 4 16 16 C 1.53003 * 109.46873 * 175.00071 * 15 14 5 17 17 C 1.52997 * 109.47196 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47274 * 299.99638 * 17 16 15 19 19 F 1.39896 * 109.46859 * 300.00265 * 18 17 16 20 20 F 1.39900 * 109.47135 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46714 * 60.00066 * 18 17 16 22 22 C 1.52997 * 109.47196 * 299.99981 * 21 18 17 23 23 H 1.08997 * 109.47262 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.47036 * 60.00301 * 1 2 3 25 25 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47391 * 59.99987 * 3 2 1 27 27 H 1.09006 * 109.47006 * 299.99792 * 3 2 1 28 28 H 1.08997 * 109.46976 * 305.00214 * 4 3 2 29 29 H 1.08994 * 109.47838 * 184.99630 * 4 3 2 30 30 H 0.97002 * 120.00567 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47107 * 329.99886 * 14 5 4 32 32 H 1.09003 * 109.46805 * 209.99633 * 14 5 4 33 33 H 1.08996 * 109.47318 * 54.99888 * 15 14 5 34 34 H 1.08998 * 109.46743 * 299.99627 * 16 15 14 35 35 H 1.08996 * 109.47298 * 59.99804 * 16 15 14 36 36 H 1.09009 * 109.47318 * 59.99793 * 17 16 15 37 37 H 1.09001 * 109.47510 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46743 * 180.02562 * 21 18 17 39 39 H 1.08996 * 109.47298 * 59.99982 * 21 18 17 40 40 H 1.09009 * 109.47318 * 300.00207 * 22 21 18 41 41 H 1.09001 * 109.47510 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1994 -0.7861 -1.3042 7 1 3.9885 -1.3328 -2.2115 8 6 4.6965 -1.4520 -0.1923 9 7 5.3582 -0.7876 0.7313 10 14 4.4260 -3.2909 -0.0067 11 1 5.0437 -4.0006 -1.1556 12 1 5.0497 -3.7579 1.2575 13 1 2.9689 -3.5762 0.0259 14 6 4.1795 1.3877 -2.4454 15 6 5.6255 1.8863 -2.4814 16 6 5.8720 2.6416 -3.7889 17 6 7.3178 3.1408 -3.8248 18 6 7.5633 4.0780 -2.6405 19 9 6.6911 5.1688 -2.7205 20 9 8.8855 4.5340 -2.6729 21 6 7.3168 3.3227 -1.3329 22 6 5.8710 2.8234 -1.2971 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8901 28 1 3.8507 0.5686 0.8427 29 1 3.9784 2.1766 0.0901 30 1 5.7053 -1.2528 1.5085 31 1 3.5015 2.2407 -2.4179 32 1 3.9783 0.7921 -3.3358 33 1 6.3047 1.0361 -2.4193 34 1 5.6967 1.9741 -4.6326 35 1 5.1928 3.4918 -3.8511 36 1 7.9974 2.2908 -3.7624 37 1 7.4936 3.6785 -4.7565 38 1 7.4912 3.9904 -0.4893 39 1 7.9962 2.4727 -1.2706 40 1 5.1914 3.6735 -1.3594 41 1 5.6952 2.2857 -0.3654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459540436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = -157.957998 kcal Electronic energy + Delta-G solvation = -23309.493761 eV Core-core repulsion = 19666.629412 eV Total energy + Delta-G solvation = -3642.864350 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92438 -47.91973 -39.50216 -38.46533 -36.59270 -33.42838 -32.09647 -31.55899 -29.93905 -27.12177 -26.72087 -24.89732 -23.86498 -22.80046 -21.53235 -20.73249 -18.56694 -18.29338 -17.68977 -17.28516 -17.11282 -16.68043 -16.45169 -15.69687 -15.51086 -15.41838 -15.14989 -14.94839 -14.52641 -14.32374 -14.14761 -13.83989 -13.42013 -13.30835 -13.27701 -13.12851 -12.72965 -12.54701 -12.47311 -12.36495 -12.28582 -12.17183 -11.92735 -11.72528 -11.52812 -11.47050 -11.14687 -10.79617 -10.37570 -10.30147 -8.43919 -7.69738 -5.20586 1.48455 1.53281 1.59157 2.61978 2.85951 3.20742 3.24202 3.40712 3.46427 3.49135 3.74596 4.08543 4.21366 4.33317 4.38947 4.43328 4.46026 4.54879 4.55991 4.63953 4.75090 4.80811 4.83487 4.88602 4.92288 4.97210 5.01935 5.04945 5.11032 5.18922 5.31042 5.32541 5.61765 5.72202 5.79501 5.91582 6.51767 6.69918 7.31808 8.03553 8.51413 9.27895 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.005580 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.013477 B = 5016.785726 C = 5744.724681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.137 3.863 5 N -0.585 5.585 6 C -0.235 4.235 7 H 0.046 0.954 8 C -0.028 4.028 9 N -0.913 5.913 10 Si 0.940 3.060 11 H -0.280 1.280 12 H -0.298 1.298 13 H -0.290 1.290 14 C 0.152 3.848 15 C -0.099 4.099 16 C -0.105 4.105 17 C -0.149 4.149 18 C 0.287 3.713 19 F -0.207 7.207 20 F -0.214 7.214 21 C -0.151 4.151 22 C -0.100 4.100 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.245 0.755 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 9.281 -6.098 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.029 4.029 4 C 0.011 3.989 5 N -0.305 5.305 6 C -0.366 4.366 7 H 0.064 0.936 8 C -0.224 4.224 9 N -0.559 5.559 10 Si 0.770 3.230 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.217 1.217 14 C 0.026 3.974 15 C -0.120 4.120 16 C -0.143 4.143 17 C -0.187 4.187 18 C 0.251 3.749 19 F -0.189 7.189 20 F -0.195 7.195 21 C -0.189 4.189 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.978 9.092 -5.972 10.922 hybrid contribution -0.170 -0.772 0.540 0.957 sum -1.148 8.320 -5.432 10.003 Atomic orbital electron populations 1.22815 0.81639 1.02549 1.00052 1.88129 1.19598 1.28961 1.95187 1.23324 0.97415 0.83844 0.98281 1.21100 0.89002 0.96902 0.91946 1.43799 1.75897 1.03560 1.07248 1.18961 1.34505 0.84401 0.98731 0.93608 1.25359 0.97783 0.99868 0.99419 1.70042 1.37434 1.35956 1.12445 0.85779 0.77347 0.83417 0.76429 1.20632 1.22438 1.21703 1.21009 0.93308 0.93452 0.89618 1.21684 0.99729 0.96814 0.93794 1.21495 0.94307 1.00405 0.98058 1.22480 1.00325 0.99364 0.96542 1.21309 0.71220 0.82430 0.99923 1.92946 1.69913 1.58426 1.97568 1.92962 1.38005 1.90772 1.97781 1.22453 1.00416 1.00855 0.95149 1.21448 0.93626 0.98459 1.00188 0.93566 0.93819 0.90073 0.93738 0.94312 0.91097 0.92462 0.94554 0.93216 0.94007 0.93350 0.89684 0.90843 0.88641 0.88236 0.89858 0.89491 0.91759 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.20 10.42 -148.98 -1.55 -18.76 16 3 C 0.05 1.93 6.28 71.98 0.45 2.39 16 4 C 0.14 6.09 4.87 86.38 0.42 6.51 16 5 N -0.59 -27.08 2.24 -701.98 -1.57 -28.64 16 6 C -0.24 -12.51 9.26 84.04 0.78 -11.73 16 7 H 0.05 2.49 7.92 -2.91 -0.02 2.47 16 8 C -0.03 -1.52 4.92 84.86 0.42 -1.10 16 9 N -0.91 -51.66 11.34 21.65 0.25 -51.41 16 10 Si 0.94 45.64 29.61 68.60 2.03 47.67 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 14 C 0.15 5.72 5.17 86.38 0.45 6.16 16 15 C -0.10 -3.34 2.40 -10.79 -0.03 -3.37 16 16 C -0.10 -2.68 5.08 30.59 0.16 -2.52 16 17 C -0.15 -3.55 5.45 30.59 0.17 -3.38 16 18 C 0.29 7.87 2.10 30.60 0.06 7.93 16 19 F -0.21 -5.99 16.02 44.97 0.72 -5.27 16 20 F -0.21 -6.15 17.06 44.97 0.77 -5.39 16 21 C -0.15 -4.46 5.45 30.59 0.17 -4.29 16 22 C -0.10 -3.31 4.10 30.59 0.13 -3.19 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 3.76 5.34 -2.39 -0.01 3.75 16 29 H 0.06 2.33 5.76 -2.39 -0.01 2.32 16 30 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.05 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 36 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.06 2.00 7.80 -2.38 -0.02 1.98 16 41 H 0.07 2.68 5.79 -2.39 -0.01 2.66 16 Total: -1.00 -60.51 328.50 6.06 -54.45 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.00 Total: 11.89 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.42 Total: -4.53 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.32 Total: -80.06 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.55 Total: -18.76 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 1.49 Total: -10.66 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -60.51 6.06 -54.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.507 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds