Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00157 * 2 1 4 4 H 1.48504 * 109.46837 * 90.00342 * 3 2 1 5 5 H 1.48502 * 109.47333 * 210.00359 * 3 2 1 6 6 H 1.48501 * 109.47184 * 330.00751 * 3 2 1 7 7 C 1.37875 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00568 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99940 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.67425 * 56.76664 * 9 7 2 11 11 C 1.54892 * 110.75386 * 293.32823 * 9 7 2 12 12 C 1.54270 * 104.19426 * 203.73969 * 11 9 7 13 13 C 1.53872 * 106.59704 * 23.61655 * 12 11 9 14 14 H 1.08998 * 110.03094 * 240.71172 * 13 12 11 15 15 N 1.46503 * 110.03596 * 119.28015 * 13 12 11 16 16 C 1.34775 * 119.99746 * 87.82787 * 15 13 12 17 17 O 1.21618 * 120.00246 * 0.02562 * 16 15 13 18 18 C 1.47102 * 119.99934 * 180.02562 * 16 15 13 19 19 C 1.32993 * 120.00155 * 186.63288 * 18 16 15 20 20 C 1.50702 * 120.00233 * 17.32677 * 19 18 16 21 21 C 1.54261 * 110.03530 * 251.26126 * 20 19 18 22 22 C 1.54966 * 104.16118 * 217.13275 * 21 20 19 23 23 C 1.54890 * 102.77636 * 37.88473 * 22 21 20 24 24 C 1.53869 * 110.03645 * 134.03767 * 20 19 18 25 25 C 1.54260 * 106.60029 * 359.97438 * 13 12 11 26 26 H 0.97002 * 119.99915 * 179.97438 * 1 2 3 27 27 H 1.08992 * 110.48916 * 322.42361 * 11 9 7 28 28 H 1.09004 * 110.48489 * 85.07135 * 11 9 7 29 29 H 1.08996 * 110.03361 * 264.32816 * 12 11 9 30 30 H 1.09007 * 110.06769 * 142.91783 * 12 11 9 31 31 H 0.97000 * 120.00231 * 267.83362 * 15 13 12 32 32 H 1.08000 * 119.99930 * 6.63767 * 18 16 15 33 33 H 1.08004 * 120.00336 * 197.32606 * 19 18 16 34 34 H 1.09006 * 110.01147 * 12.64829 * 20 19 18 35 35 H 1.09002 * 110.48782 * 335.78073 * 21 20 19 36 36 H 1.09005 * 110.49170 * 98.42232 * 21 20 19 37 37 H 1.08998 * 110.71993 * 279.57428 * 22 21 20 38 38 H 1.08999 * 110.92029 * 156.29294 * 22 21 20 39 39 H 1.08995 * 110.48838 * 203.40351 * 23 22 21 40 40 H 1.09006 * 110.59788 * 80.81828 * 23 22 21 41 41 H 1.09001 * 110.03875 * 238.57732 * 24 20 19 42 42 H 1.09006 * 110.02984 * 0.02562 * 24 20 19 43 43 H 1.09006 * 110.49054 * 217.71507 * 25 13 12 44 44 H 1.08999 * 110.48915 * 95.07292 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5742 -2.5528 -0.8533 11 6 0.4803 -2.6880 1.3297 12 6 0.2971 -4.2153 1.4472 13 6 1.4101 -4.8579 0.6012 14 1 0.9731 -5.4594 -0.1958 15 7 2.2664 -5.6919 1.4482 16 6 1.9473 -6.9832 1.6648 17 8 0.9487 -7.4563 1.1568 18 6 2.8067 -7.8205 2.5158 19 6 2.5676 -9.1243 2.6240 20 6 1.6960 -9.8174 1.6087 21 6 0.3431 -10.1973 2.2450 22 6 -0.0004 -11.5704 1.6140 23 6 1.3809 -12.2667 1.5361 24 6 2.3555 -11.1324 1.1576 25 6 2.2305 -3.6988 -0.0015 26 1 -0.4850 -0.8401 -0.0004 27 1 1.0658 -2.3084 2.1670 28 1 -0.4883 -2.1901 1.2835 29 1 -0.6801 -4.5049 1.0609 30 1 0.3935 -4.5246 2.4880 31 1 3.0630 -5.3146 1.8532 32 1 3.6319 -7.3765 3.0528 33 1 2.9981 -9.6864 3.4396 34 1 1.5347 -9.1666 0.7492 35 1 0.4425 -10.2888 3.3266 36 1 -0.4182 -9.4592 1.9921 37 1 -0.4249 -11.4418 0.6183 38 1 -0.6812 -12.1329 2.2529 39 1 1.3763 -13.0383 0.7663 40 1 1.6498 -12.6943 2.5020 41 1 2.5137 -11.1202 0.0792 42 1 3.3059 -11.2695 1.6735 43 1 2.5394 -3.9386 -1.0190 44 1 3.0988 -3.4821 0.6207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493302338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -50.543429 kcal Electronic energy + Delta-G solvation = -21423.009501 eV Core-core repulsion = 18339.032526 eV Total energy + Delta-G solvation = -3083.976975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94024 -38.31839 -37.12142 -33.87211 -33.24664 -31.93819 -28.77196 -28.38676 -28.18282 -26.73762 -23.83394 -22.71794 -20.75875 -20.43182 -20.07930 -19.36013 -19.07610 -16.98175 -16.72168 -15.98406 -15.71765 -14.98807 -14.86547 -14.19603 -13.77624 -13.73728 -13.56499 -13.43808 -12.89871 -12.79917 -12.47306 -12.04416 -11.79557 -11.29008 -11.27741 -11.13113 -10.95862 -10.92678 -10.79382 -10.75245 -10.69168 -10.49889 -10.12009 -10.07035 -9.78609 -9.47338 -9.44992 -9.11790 -8.60268 -8.45305 -8.32748 -6.32423 -4.04786 1.32186 3.41211 3.42829 3.46199 3.54495 3.61898 4.50125 4.53453 4.57021 4.60229 4.90522 4.99578 5.31213 5.33638 5.35209 5.44249 5.46968 5.52448 5.57106 5.58619 5.60219 5.68840 5.74186 5.79206 5.92372 6.15195 6.17627 6.18397 6.23615 6.26249 6.29380 6.44128 6.52511 6.59033 6.63566 6.73521 6.80757 7.01590 7.14268 7.33459 7.64942 7.82552 8.24567 8.44895 8.49170 8.89813 9.67385 11.05813 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048656 B = 0.002971 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.332193 B = 9423.391671 C = 9659.109979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.049 0.951 9 C 0.035 3.965 10 H 0.026 0.974 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.138 3.862 14 H 0.081 0.919 15 N -0.715 5.715 16 C 0.538 3.462 17 O -0.541 6.541 18 C -0.224 4.224 19 C -0.055 4.055 20 C -0.087 4.087 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.273 0.727 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.398 0.602 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 -20.690 5.604 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.067 0.933 9 C 0.017 3.983 10 H 0.044 0.956 11 C -0.154 4.154 12 C -0.170 4.170 13 C 0.034 3.966 14 H 0.099 0.901 15 N -0.364 5.364 16 C 0.327 3.673 17 O -0.421 6.421 18 C -0.245 4.245 19 C -0.074 4.074 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.151 4.151 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.374 -19.347 5.217 20.510 hybrid contribution 0.753 -1.427 0.438 1.672 sum 5.127 -20.773 5.654 22.131 Atomic orbital electron populations 1.70758 1.06869 1.31066 1.46273 1.25769 0.96572 1.02506 0.93670 0.83548 0.74701 0.75330 0.76674 1.21562 1.21570 1.21051 1.21940 0.93959 0.91382 1.55917 0.93308 1.19707 0.93041 0.92767 0.92834 0.95626 1.22572 1.00593 0.91537 1.00714 1.22589 0.97674 0.98032 0.98726 1.21822 0.91257 0.91346 0.92170 0.90100 1.46280 1.28469 1.10767 1.50886 1.18631 0.85771 0.82245 0.80626 1.90684 1.27836 1.72553 1.51072 1.22714 1.01765 0.95556 1.04439 1.23741 0.94127 0.94506 0.95061 1.21439 0.93898 0.96337 0.98865 1.22241 0.96525 0.96474 0.98978 1.22527 0.96663 0.96179 1.00995 1.22369 0.95356 0.97435 1.01033 1.22254 0.98410 0.94049 1.00983 1.22624 0.98882 0.94597 0.99029 0.91550 0.92711 0.92608 0.92500 0.92913 0.76816 0.85669 0.86171 0.86829 0.92349 0.90719 0.91509 0.91878 0.91988 0.91901 0.91767 0.92009 0.92752 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 13.49 55.43 0.75 -26.41 16 2 C 0.02 0.54 5.36 -17.82 -0.10 0.45 16 3 Si 1.07 24.89 29.90 -169.99 -5.08 19.80 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.59 -16.22 8.49 -34.44 -0.29 -16.51 16 8 H 0.05 1.32 7.77 -52.49 -0.41 0.91 16 9 C 0.04 0.86 2.37 -89.79 -0.21 0.65 16 10 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 11 C -0.12 -2.62 5.69 -25.07 -0.14 -2.76 16 12 C -0.13 -2.54 6.59 -25.61 -0.17 -2.71 16 13 C 0.14 2.49 3.24 -66.82 -0.22 2.28 16 14 H 0.08 1.54 7.56 -51.93 -0.39 1.15 16 15 N -0.71 -10.76 4.98 -53.90 -0.27 -11.03 16 16 C 0.54 8.07 7.52 -12.67 -0.10 7.97 16 17 O -0.54 -9.57 12.49 5.26 0.07 -9.50 16 18 C -0.22 -2.54 10.00 -37.81 -0.38 -2.92 16 19 C -0.05 -0.56 8.44 -36.13 -0.30 -0.87 16 20 C -0.09 -0.99 2.33 -90.66 -0.21 -1.20 16 21 C -0.10 -1.16 6.17 -25.03 -0.15 -1.32 16 22 C -0.13 -1.17 6.91 -24.70 -0.17 -1.34 16 23 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 24 C -0.12 -1.10 6.45 -25.62 -0.17 -1.26 16 25 C -0.11 -2.25 5.94 -25.09 -0.15 -2.40 16 26 H 0.27 8.02 5.56 -40.82 -0.23 7.79 16 27 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 28 H 0.06 1.35 6.67 -51.93 -0.35 1.00 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 31 H 0.40 5.10 8.34 -40.82 -0.34 4.76 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.11 1.63 5.34 -51.93 -0.28 1.36 16 35 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 36 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.20 7.63 -51.93 -0.40 0.80 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.34 343.55 -9.72 -40.07 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.43 Total: 5.04 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.93 Total: -23.15 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.48 Total: -37.44 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.34 -9.72 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493302338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.478 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds