Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00157 * 2 1 4 4 H 1.48504 * 109.46837 * 90.00342 * 3 2 1 5 5 H 1.48502 * 109.47333 * 210.00359 * 3 2 1 6 6 H 1.48501 * 109.47184 * 330.00751 * 3 2 1 7 7 C 1.37875 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00568 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99940 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.67425 * 56.76664 * 9 7 2 11 11 C 1.54892 * 110.75386 * 293.32823 * 9 7 2 12 12 C 1.54270 * 104.19426 * 203.73969 * 11 9 7 13 13 C 1.53872 * 106.59704 * 23.61655 * 12 11 9 14 14 H 1.08998 * 110.03094 * 240.71172 * 13 12 11 15 15 N 1.46503 * 110.03596 * 119.28015 * 13 12 11 16 16 C 1.34775 * 119.99746 * 87.82787 * 15 13 12 17 17 O 1.21618 * 120.00246 * 0.02562 * 16 15 13 18 18 C 1.47102 * 119.99934 * 180.02562 * 16 15 13 19 19 C 1.32993 * 120.00155 * 186.63288 * 18 16 15 20 20 C 1.50702 * 120.00233 * 17.32677 * 19 18 16 21 21 C 1.54261 * 110.03530 * 251.26126 * 20 19 18 22 22 C 1.54966 * 104.16118 * 217.13275 * 21 20 19 23 23 C 1.54890 * 102.77636 * 37.88473 * 22 21 20 24 24 C 1.53869 * 110.03645 * 134.03767 * 20 19 18 25 25 C 1.54260 * 106.60029 * 359.97438 * 13 12 11 26 26 H 0.97002 * 119.99915 * 179.97438 * 1 2 3 27 27 H 1.08992 * 110.48916 * 322.42361 * 11 9 7 28 28 H 1.09004 * 110.48489 * 85.07135 * 11 9 7 29 29 H 1.08996 * 110.03361 * 264.32816 * 12 11 9 30 30 H 1.09007 * 110.06769 * 142.91783 * 12 11 9 31 31 H 0.97000 * 120.00231 * 267.83362 * 15 13 12 32 32 H 1.08000 * 119.99930 * 6.63767 * 18 16 15 33 33 H 1.08004 * 120.00336 * 197.32606 * 19 18 16 34 34 H 1.09006 * 110.01147 * 12.64829 * 20 19 18 35 35 H 1.09002 * 110.48782 * 335.78073 * 21 20 19 36 36 H 1.09005 * 110.49170 * 98.42232 * 21 20 19 37 37 H 1.08998 * 110.71993 * 279.57428 * 22 21 20 38 38 H 1.08999 * 110.92029 * 156.29294 * 22 21 20 39 39 H 1.08995 * 110.48838 * 203.40351 * 23 22 21 40 40 H 1.09006 * 110.59788 * 80.81828 * 23 22 21 41 41 H 1.09001 * 110.03875 * 238.57732 * 24 20 19 42 42 H 1.09006 * 110.02984 * 0.02562 * 24 20 19 43 43 H 1.09006 * 110.49054 * 217.71507 * 25 13 12 44 44 H 1.08999 * 110.48915 * 95.07292 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5742 -2.5528 -0.8533 11 6 0.4803 -2.6880 1.3297 12 6 0.2971 -4.2153 1.4472 13 6 1.4101 -4.8579 0.6012 14 1 0.9731 -5.4594 -0.1958 15 7 2.2664 -5.6919 1.4482 16 6 1.9473 -6.9832 1.6648 17 8 0.9487 -7.4563 1.1568 18 6 2.8067 -7.8205 2.5158 19 6 2.5676 -9.1243 2.6240 20 6 1.6960 -9.8174 1.6087 21 6 0.3431 -10.1973 2.2450 22 6 -0.0004 -11.5704 1.6140 23 6 1.3809 -12.2667 1.5361 24 6 2.3555 -11.1324 1.1576 25 6 2.2305 -3.6988 -0.0015 26 1 -0.4850 -0.8401 -0.0004 27 1 1.0658 -2.3084 2.1670 28 1 -0.4883 -2.1901 1.2835 29 1 -0.6801 -4.5049 1.0609 30 1 0.3935 -4.5246 2.4880 31 1 3.0630 -5.3146 1.8532 32 1 3.6319 -7.3765 3.0528 33 1 2.9981 -9.6864 3.4396 34 1 1.5347 -9.1666 0.7492 35 1 0.4425 -10.2888 3.3266 36 1 -0.4182 -9.4592 1.9921 37 1 -0.4249 -11.4418 0.6183 38 1 -0.6812 -12.1329 2.2529 39 1 1.3763 -13.0383 0.7663 40 1 1.6498 -12.6943 2.5020 41 1 2.5137 -11.1202 0.0792 42 1 3.3059 -11.2695 1.6735 43 1 2.5394 -3.9386 -1.0190 44 1 3.0988 -3.4821 0.6207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493302338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -66.872771 kcal Electronic energy + Delta-G solvation = -21423.717594 eV Core-core repulsion = 18339.032526 eV Total energy + Delta-G solvation = -3084.685068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13566 -39.44796 -38.49044 -35.53589 -34.17304 -33.67296 -29.98780 -29.55320 -29.43171 -28.18492 -25.81594 -23.86271 -21.78944 -21.51120 -21.25561 -20.93565 -20.31682 -18.91899 -17.88130 -17.18404 -16.84665 -16.26714 -15.97151 -15.63809 -15.54370 -14.95479 -14.62057 -14.47206 -14.21248 -14.14821 -13.93421 -13.64068 -12.92156 -12.78440 -12.62925 -12.51951 -12.35112 -11.96244 -11.93422 -11.90860 -11.81843 -11.72991 -11.64681 -11.56070 -11.44595 -11.32153 -10.56989 -10.54137 -10.45040 -10.09234 -9.85568 -8.55470 -6.28671 0.41970 1.54739 1.63206 1.80135 2.30239 2.36098 2.60373 3.23261 3.70293 3.75952 3.79622 3.84737 3.88357 4.01884 4.05462 4.27621 4.52785 4.56248 4.57631 4.61285 4.68780 4.70706 4.77948 4.79273 4.85115 4.87905 4.91770 4.95333 5.02383 5.09460 5.10461 5.18069 5.19531 5.35490 5.36847 5.43206 5.47445 5.50002 5.61377 5.71936 5.76478 6.12947 6.27258 6.67812 6.68250 7.34321 7.52160 8.83020 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048656 B = 0.002971 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.332193 B = 9423.391671 C = 9659.109979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.033 4.033 3 Si 1.115 2.885 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.022 3.978 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.120 4.120 13 C 0.152 3.848 14 H 0.070 0.930 15 N -0.709 5.709 16 C 0.531 3.469 17 O -0.575 6.575 18 C -0.235 4.235 19 C -0.040 4.040 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.100 4.100 26 H 0.261 0.739 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -22.431 7.185 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.232 4.232 3 Si 0.937 3.063 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.641 4.641 8 H 0.069 0.931 9 C 0.003 3.997 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.159 4.159 13 C 0.047 3.953 14 H 0.088 0.912 15 N -0.360 5.360 16 C 0.322 3.678 17 O -0.457 6.457 18 C -0.256 4.256 19 C -0.059 4.059 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.762 -21.115 6.810 23.193 hybrid contribution -0.033 -0.954 -0.099 0.959 sum 6.729 -22.068 6.712 24.028 Atomic orbital electron populations 1.70872 1.07948 1.30494 1.48640 1.27197 0.96629 1.06361 0.92968 0.82955 0.74226 0.71524 0.77567 1.20026 1.19506 1.21373 1.22325 0.94256 0.92684 1.54825 0.93146 1.19717 0.93693 0.93816 0.92450 0.98610 1.22350 0.98812 0.93753 0.99419 1.22473 0.98179 0.95469 0.99785 1.21387 0.90911 0.90906 0.92087 0.91228 1.46107 1.28533 1.10746 1.50632 1.19333 0.85899 0.82147 0.80381 1.90698 1.29529 1.73059 1.52410 1.22761 1.02631 0.95540 1.04635 1.24077 0.92635 0.94363 0.94862 1.21388 0.94646 0.97032 0.98120 1.22204 0.95655 0.96616 0.99769 1.22532 0.97901 0.95499 1.00456 1.22363 0.93899 0.97128 1.02235 1.22234 0.99296 0.93064 1.00782 1.22441 0.98257 0.93257 0.99851 0.92793 0.93471 0.95039 0.92896 0.91615 0.75224 0.82490 0.82437 0.90417 0.91144 0.93958 0.92694 0.90602 0.91077 0.90269 0.92490 0.90115 0.92313 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.49 21.45 0.29 -57.25 16 2 C -0.03 -1.90 5.36 84.65 0.45 -1.44 16 3 Si 1.11 49.85 29.90 68.60 2.05 51.90 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.60 -33.21 8.49 25.60 0.22 -32.99 16 8 H 0.05 2.70 7.77 -2.91 -0.02 2.68 16 9 C 0.02 1.10 2.37 -10.25 -0.02 1.08 16 10 H 0.00 -0.23 7.91 -2.39 -0.02 -0.25 16 11 C -0.10 -4.88 5.69 31.67 0.18 -4.70 16 12 C -0.12 -4.68 6.59 31.32 0.21 -4.47 16 13 C 0.15 5.48 3.24 45.71 0.15 5.63 16 14 H 0.07 2.69 7.56 -2.39 -0.02 2.67 16 15 N -0.71 -20.41 4.98 -442.70 -2.20 -22.62 16 16 C 0.53 15.37 7.52 86.57 0.65 16.02 16 17 O -0.57 -20.59 12.49 -4.09 -0.05 -20.65 16 18 C -0.24 -4.69 10.00 23.43 0.23 -4.45 16 19 C -0.04 -0.70 8.44 24.52 0.21 -0.49 16 20 C -0.09 -2.00 2.33 -10.82 -0.03 -2.03 16 21 C -0.10 -2.25 6.17 31.69 0.20 -2.05 16 22 C -0.13 -2.20 6.91 31.91 0.22 -1.98 16 23 C -0.12 -1.65 6.83 31.67 0.22 -1.43 16 24 C -0.12 -1.87 6.45 31.32 0.20 -1.67 16 25 C -0.10 -3.95 5.94 31.66 0.19 -3.76 16 26 H 0.26 16.08 5.56 -92.71 -0.52 15.57 16 27 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 28 H 0.03 1.58 6.67 -2.39 -0.02 1.57 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.38 7.92 -2.38 -0.02 2.36 16 31 H 0.41 9.59 8.34 -92.71 -0.77 8.82 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.08 2.27 5.34 -2.38 -0.01 2.26 16 35 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 36 H 0.04 1.16 7.67 -2.38 -0.02 1.15 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.00 7.67 -2.38 -0.02 0.99 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.07 2.74 7.63 -2.39 -0.02 2.72 16 Total: -1.00 -67.82 343.55 3.81 -64.02 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.45 Total: 23.33 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.27 Total: -38.73 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.92 Total: -79.87 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -67.82 3.81 -64.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493302338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.858 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds