Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47226 * 270.00590 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00281 * 3 2 1 6 6 H 1.48502 * 109.47567 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00264 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99943 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46495 * 119.99962 * 90.00115 * 10 9 7 12 12 C 1.52996 * 109.47343 * 269.99693 * 11 10 9 13 13 C 1.53002 * 117.49888 * 116.25574 * 12 11 10 14 14 C 1.53000 * 117.50107 * 184.91336 * 12 11 10 15 15 C 1.34780 * 119.99848 * 270.00022 * 10 9 7 16 16 O 1.21616 * 120.00099 * 0.02562 * 15 10 9 17 17 C 1.47095 * 119.99891 * 179.97438 * 15 10 9 18 18 C 1.32999 * 120.00200 * 179.97438 * 17 15 10 19 19 C 1.50697 * 120.00291 * 180.02562 * 18 17 15 20 20 C 1.54269 * 110.02956 * 237.16888 * 19 18 17 21 21 C 1.54886 * 104.19298 * 217.10126 * 20 19 18 22 22 C 1.54889 * 102.74966 * 37.94530 * 21 20 19 23 23 C 1.53869 * 110.03482 * 120.00184 * 19 18 17 24 24 H 0.97001 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46969 * 60.00396 * 9 7 2 26 26 H 1.08997 * 109.47229 * 300.00209 * 9 7 2 27 27 H 1.09002 * 109.47043 * 149.99590 * 11 10 9 28 28 H 1.09004 * 109.47109 * 30.00143 * 11 10 9 29 29 H 1.09002 * 115.54951 * 330.58548 * 12 11 10 30 30 H 1.09000 * 117.49996 * 215.00804 * 13 12 11 31 31 H 1.08999 * 117.49664 * 0.02562 * 13 12 11 32 32 H 1.09008 * 117.49673 * 359.97438 * 14 12 11 33 33 H 1.08999 * 117.49959 * 144.99502 * 14 12 11 34 34 H 1.07997 * 120.00469 * 0.02562 * 17 15 10 35 35 H 1.08003 * 119.99442 * 0.02562 * 18 17 15 36 36 H 1.09003 * 110.01455 * 358.60825 * 19 18 17 37 37 H 1.09001 * 110.48778 * 335.78345 * 20 19 18 38 38 H 1.08998 * 110.48759 * 98.42923 * 20 19 18 39 39 H 1.08999 * 110.76216 * 279.62741 * 21 20 19 40 40 H 1.09006 * 110.75501 * 156.25425 * 21 20 19 41 41 H 1.09001 * 110.48436 * 203.37631 * 22 21 20 42 42 H 1.09002 * 110.60233 * 80.78579 * 22 21 20 43 43 H 1.09002 * 110.03527 * 238.56983 * 23 19 18 44 44 H 1.08998 * 110.03249 * 359.94979 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 4.2435 -3.2650 -1.2715 12 6 2.9684 -3.9860 -1.7132 13 6 2.3108 -3.5245 -3.0153 14 6 3.0501 -4.8638 -2.9636 15 6 4.2249 -3.2114 1.1645 16 8 4.0222 -2.6390 2.2182 17 6 4.7146 -4.5985 1.1634 18 6 4.9372 -5.2261 2.3147 19 6 5.4394 -6.6469 2.3136 20 6 4.4679 -7.5514 3.0997 21 6 5.3922 -8.5566 3.8306 22 6 6.6016 -7.6774 4.2348 23 6 6.7960 -6.7270 3.0353 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 5.0455 -3.9918 -1.1419 28 1 4.5313 -2.5378 -2.0308 29 1 2.3125 -4.3170 -0.9079 30 1 1.2224 -3.5518 -3.0667 31 1 2.7869 -2.7075 -3.5575 32 1 4.0124 -4.9273 -3.4719 33 1 2.4482 -5.7723 -2.9811 34 1 4.8942 -5.1070 0.2277 35 1 4.7579 -4.7174 3.2504 36 1 5.5395 -7.0064 1.2894 37 1 3.8979 -6.9641 3.8196 38 1 3.7982 -8.0753 2.4178 39 1 5.7032 -9.3554 3.1574 40 1 4.8987 -8.9638 4.7131 41 1 7.4889 -8.2933 4.3813 42 1 6.3786 -7.1102 5.1385 43 1 7.5544 -7.1262 2.3617 44 1 7.0916 -5.7381 3.3856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493330470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -8.651149 kcal Electronic energy + Delta-G solvation = -21611.395882 eV Core-core repulsion = 18529.235493 eV Total energy + Delta-G solvation = -3082.160389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31236 -38.34338 -36.99065 -34.42287 -33.13968 -32.35791 -29.01351 -28.81266 -27.73942 -26.12281 -23.33912 -21.97091 -21.12317 -20.80980 -20.47198 -19.50621 -18.25528 -16.86698 -16.62893 -16.11736 -15.39616 -15.08012 -14.76064 -14.43026 -13.94711 -13.53710 -13.48999 -13.27271 -13.04797 -12.39127 -12.26905 -11.89163 -11.75816 -11.48790 -11.40678 -11.28156 -11.20068 -11.16552 -11.13591 -10.90694 -10.80244 -10.59196 -10.52175 -10.08093 -9.96493 -9.54855 -9.42745 -9.07337 -8.97675 -8.52893 -7.66785 -6.02245 -3.99199 1.78042 3.29910 3.38232 3.42909 3.77905 4.03460 4.24246 4.44924 4.46642 4.54426 4.58056 4.98188 5.14782 5.20208 5.27352 5.30354 5.31285 5.39517 5.41211 5.49606 5.52159 5.52570 5.61080 5.74161 5.75920 5.79588 5.87821 5.89275 5.92278 6.07213 6.08551 6.16386 6.23986 6.34444 6.48939 6.54081 6.68732 6.71190 6.79027 7.05023 7.41544 7.67714 8.31559 8.54356 9.00622 9.06446 9.58692 11.11284 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004419 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.584151 B = 6335.193055 C = 7195.672663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.076 0.924 9 C 0.216 3.784 10 N -0.586 5.586 11 C 0.146 3.854 12 C -0.154 4.154 13 C -0.161 4.161 14 C -0.191 4.191 15 C 0.538 3.462 16 O -0.545 6.545 17 C -0.203 4.203 18 C -0.077 4.077 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.263 0.737 25 H 0.040 0.960 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.901 -15.871 -0.209 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.094 0.906 9 C 0.095 3.905 10 N -0.316 5.316 11 C 0.022 3.978 12 C -0.173 4.173 13 C -0.198 4.198 14 C -0.229 4.229 15 C 0.327 3.673 16 O -0.425 6.425 17 C -0.224 4.224 18 C -0.096 4.096 19 C -0.086 4.086 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.639 -15.388 0.325 19.916 hybrid contribution 0.082 0.983 -0.257 1.019 sum 12.721 -14.405 0.068 19.219 Atomic orbital electron populations 1.69894 1.06129 1.26755 1.51065 1.24835 0.94719 0.98749 0.94739 0.86919 0.80686 0.84161 0.78403 1.20229 1.21053 1.18919 1.21307 0.89036 0.94774 1.50444 0.90570 1.19680 0.95956 0.77713 0.97140 1.47790 1.63975 1.15484 1.04367 1.21052 0.94707 0.95555 0.86473 1.22727 1.00250 1.02258 0.92062 1.22872 0.99894 0.96448 1.00549 1.22979 1.02153 0.95060 1.02702 1.18430 0.78440 0.86491 0.83930 1.90744 1.52887 1.67922 1.30897 1.22916 1.04823 0.95668 0.99016 1.23658 0.92805 0.94427 0.98749 1.21007 0.94983 0.92400 1.00257 1.22421 0.97382 0.96635 0.99092 1.22507 0.96196 0.97621 0.99935 1.22380 0.98108 0.97574 0.98241 1.22181 0.96204 1.00119 0.96986 0.92734 0.94194 0.95896 0.90965 0.90731 0.87668 0.88975 0.88998 0.89307 0.89369 0.85921 0.85790 0.90367 0.90980 0.91389 0.91576 0.91597 0.91842 0.91520 0.91638 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -14.90 9.94 -34.44 -0.34 -15.24 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 C 0.22 5.37 4.27 -5.19 -0.02 5.35 16 10 N -0.59 -12.36 2.46 -176.46 -0.43 -12.79 16 11 C 0.15 2.38 5.45 -4.05 -0.02 2.36 16 12 C -0.15 -2.52 6.01 -90.62 -0.54 -3.06 16 13 C -0.16 -2.55 10.18 -26.69 -0.27 -2.82 16 14 C -0.19 -2.46 10.25 -26.70 -0.27 -2.73 16 15 C 0.54 11.43 7.62 -12.67 -0.10 11.33 16 16 O -0.55 -13.91 15.80 5.26 0.08 -13.83 16 17 C -0.20 -3.21 8.83 -37.81 -0.33 -3.55 16 18 C -0.08 -1.08 7.98 -36.13 -0.29 -1.37 16 19 C -0.07 -0.72 3.25 -90.66 -0.29 -1.01 16 20 C -0.12 -1.16 6.35 -25.07 -0.16 -1.32 16 21 C -0.13 -1.02 6.91 -24.74 -0.17 -1.19 16 22 C -0.13 -1.04 6.83 -25.07 -0.17 -1.21 16 23 C -0.12 -1.09 6.45 -25.62 -0.17 -1.26 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 26 H 0.02 0.54 7.32 -51.93 -0.38 0.16 16 27 H 0.07 0.95 6.10 -51.93 -0.32 0.63 16 28 H 0.07 1.15 7.63 -51.93 -0.40 0.76 16 29 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 32 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.61 6.05 -52.49 -0.32 1.29 16 35 H 0.12 1.96 7.49 -52.48 -0.39 1.56 16 36 H 0.08 0.76 7.84 -51.93 -0.41 0.36 16 37 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.39 356.46 -9.71 -43.10 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.59 Total: 1.88 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -3.25 Total: -13.73 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.34 Total: -39.96 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.39 -9.71 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493330470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds