Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47226 * 270.00590 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00281 * 3 2 1 6 6 H 1.48502 * 109.47567 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00264 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99943 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46495 * 119.99962 * 90.00115 * 10 9 7 12 12 C 1.52996 * 109.47343 * 269.99693 * 11 10 9 13 13 C 1.53002 * 117.49888 * 116.25574 * 12 11 10 14 14 C 1.53000 * 117.50107 * 184.91336 * 12 11 10 15 15 C 1.34780 * 119.99848 * 270.00022 * 10 9 7 16 16 O 1.21616 * 120.00099 * 0.02562 * 15 10 9 17 17 C 1.47095 * 119.99891 * 179.97438 * 15 10 9 18 18 C 1.32999 * 120.00200 * 179.97438 * 17 15 10 19 19 C 1.50697 * 120.00291 * 180.02562 * 18 17 15 20 20 C 1.54269 * 110.02956 * 237.16888 * 19 18 17 21 21 C 1.54886 * 104.19298 * 217.10126 * 20 19 18 22 22 C 1.54889 * 102.74966 * 37.94530 * 21 20 19 23 23 C 1.53869 * 110.03482 * 120.00184 * 19 18 17 24 24 H 0.97001 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46969 * 60.00396 * 9 7 2 26 26 H 1.08997 * 109.47229 * 300.00209 * 9 7 2 27 27 H 1.09002 * 109.47043 * 149.99590 * 11 10 9 28 28 H 1.09004 * 109.47109 * 30.00143 * 11 10 9 29 29 H 1.09002 * 115.54951 * 330.58548 * 12 11 10 30 30 H 1.09000 * 117.49996 * 215.00804 * 13 12 11 31 31 H 1.08999 * 117.49664 * 0.02562 * 13 12 11 32 32 H 1.09008 * 117.49673 * 359.97438 * 14 12 11 33 33 H 1.08999 * 117.49959 * 144.99502 * 14 12 11 34 34 H 1.07997 * 120.00469 * 0.02562 * 17 15 10 35 35 H 1.08003 * 119.99442 * 0.02562 * 18 17 15 36 36 H 1.09003 * 110.01455 * 358.60825 * 19 18 17 37 37 H 1.09001 * 110.48778 * 335.78345 * 20 19 18 38 38 H 1.08998 * 110.48759 * 98.42923 * 20 19 18 39 39 H 1.08999 * 110.76216 * 279.62741 * 21 20 19 40 40 H 1.09006 * 110.75501 * 156.25425 * 21 20 19 41 41 H 1.09001 * 110.48436 * 203.37631 * 22 21 20 42 42 H 1.09002 * 110.60233 * 80.78579 * 22 21 20 43 43 H 1.09002 * 110.03527 * 238.56983 * 23 19 18 44 44 H 1.08998 * 110.03249 * 359.94979 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 4.2435 -3.2650 -1.2715 12 6 2.9684 -3.9860 -1.7132 13 6 2.3108 -3.5245 -3.0153 14 6 3.0501 -4.8638 -2.9636 15 6 4.2249 -3.2114 1.1645 16 8 4.0222 -2.6390 2.2182 17 6 4.7146 -4.5985 1.1634 18 6 4.9372 -5.2261 2.3147 19 6 5.4394 -6.6469 2.3136 20 6 4.4679 -7.5514 3.0997 21 6 5.3922 -8.5566 3.8306 22 6 6.6016 -7.6774 4.2348 23 6 6.7960 -6.7270 3.0353 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 5.0455 -3.9918 -1.1419 28 1 4.5313 -2.5378 -2.0308 29 1 2.3125 -4.3170 -0.9079 30 1 1.2224 -3.5518 -3.0667 31 1 2.7869 -2.7075 -3.5575 32 1 4.0124 -4.9273 -3.4719 33 1 2.4482 -5.7723 -2.9811 34 1 4.8942 -5.1070 0.2277 35 1 4.7579 -4.7174 3.2504 36 1 5.5395 -7.0064 1.2894 37 1 3.8979 -6.9641 3.8196 38 1 3.7982 -8.0753 2.4178 39 1 5.7032 -9.3554 3.1574 40 1 4.8987 -8.9638 4.7131 41 1 7.4889 -8.2933 4.3813 42 1 6.3786 -7.1102 5.1385 43 1 7.5544 -7.1262 2.3617 44 1 7.0916 -5.7381 3.3856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493330470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -27.660791 kcal Electronic energy + Delta-G solvation = -21612.220202 eV Core-core repulsion = 18529.235493 eV Total energy + Delta-G solvation = -3082.984709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87181 -39.21827 -38.34491 -36.12564 -34.66353 -34.16660 -30.75036 -29.52971 -28.92425 -27.61924 -25.09427 -23.13414 -22.61845 -21.78042 -21.48973 -20.47919 -19.72977 -19.02793 -18.11419 -17.47353 -16.55160 -16.34042 -16.10597 -15.74066 -15.68876 -14.88642 -14.81693 -14.41484 -14.24429 -14.19453 -13.68627 -13.56838 -13.17954 -12.82920 -12.71021 -12.59638 -12.40905 -12.26131 -12.13347 -12.01751 -11.92895 -11.87458 -11.68175 -11.49966 -11.36189 -11.24891 -10.85504 -10.77928 -10.58889 -10.28349 -9.40862 -8.30998 -6.33941 0.47307 1.29781 1.34660 1.45211 2.23503 2.31812 2.49741 3.02390 3.03087 3.53831 3.73755 3.81273 3.88619 4.01027 4.10332 4.14868 4.23525 4.45686 4.48239 4.58783 4.61203 4.67598 4.68477 4.70187 4.73701 4.85103 4.87237 4.88641 4.94473 5.02316 5.11956 5.12597 5.25010 5.31420 5.33685 5.35732 5.38520 5.47429 5.48976 5.54038 5.58883 5.70254 6.28272 6.66604 6.71137 7.24250 7.41915 8.86086 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004419 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.584151 B = 6335.193055 C = 7195.672663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.251 1.251 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.519 4.519 8 H 0.030 0.970 9 C 0.224 3.776 10 N -0.592 5.592 11 C 0.143 3.857 12 C -0.176 4.176 13 C -0.186 4.186 14 C -0.140 4.140 15 C 0.526 3.474 16 O -0.606 6.606 17 C -0.216 4.216 18 C -0.053 4.053 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.266 0.734 25 H 0.017 0.983 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.907 -17.671 -1.836 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.175 1.175 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.101 3.899 10 N -0.320 5.320 11 C 0.021 3.979 12 C -0.195 4.195 13 C -0.224 4.224 14 C -0.177 4.177 15 C 0.318 3.682 16 O -0.489 6.489 17 C -0.236 4.236 18 C -0.073 4.073 19 C -0.082 4.082 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.177 0.823 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.664 -17.227 -1.347 23.322 hybrid contribution -0.939 1.442 0.319 1.750 sum 14.724 -15.785 -1.028 21.611 Atomic orbital electron populations 1.70053 1.08109 1.28022 1.52587 1.25796 0.95614 1.03067 0.94242 0.85775 0.79161 0.78675 0.79746 1.17538 1.20881 1.18220 1.21463 0.91229 0.93112 1.49999 0.95196 1.19350 0.93166 0.80527 0.96842 1.47870 1.63283 1.14442 1.06449 1.21402 0.95692 0.96405 0.84407 1.22573 1.00132 1.04840 0.91978 1.22905 0.99039 0.99436 1.00982 1.23080 1.02920 0.93471 0.98243 1.19394 0.77450 0.88344 0.83044 1.90699 1.55671 1.69667 1.32908 1.22781 1.06903 0.92834 1.01115 1.23895 0.90166 0.96118 0.97165 1.21102 0.95686 0.89547 1.01906 1.22458 0.97659 0.96874 0.99011 1.22499 0.95516 0.97391 1.00239 1.22401 0.98963 0.97533 0.97449 1.22199 0.95676 0.99882 0.97645 0.92495 0.96535 0.93544 0.86824 0.89491 0.91393 0.91312 0.88522 0.85782 0.88049 0.82322 0.88431 0.88243 0.92823 0.90702 0.89996 0.91085 0.90102 0.92409 0.89621 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 2 C 0.01 0.61 5.47 84.66 0.46 1.08 16 3 Si 0.94 45.68 27.47 68.60 1.88 47.56 16 4 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 7 C -0.52 -31.31 9.94 25.60 0.25 -31.06 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.22 11.33 4.27 85.63 0.37 11.70 16 10 N -0.59 -25.20 2.46 -830.43 -2.04 -27.24 16 11 C 0.14 4.39 5.45 86.38 0.47 4.86 16 12 C -0.18 -5.65 6.01 -10.79 -0.06 -5.72 16 13 C -0.19 -5.86 10.18 30.62 0.31 -5.55 16 14 C -0.14 -3.14 10.25 30.62 0.31 -2.82 16 15 C 0.53 22.95 7.62 86.57 0.66 23.61 16 16 O -0.61 -32.68 15.80 -4.08 -0.06 -32.75 16 17 C -0.22 -6.64 8.83 23.43 0.21 -6.44 16 18 C -0.05 -1.48 7.98 24.52 0.20 -1.28 16 19 C -0.06 -1.20 3.25 -10.82 -0.04 -1.23 16 20 C -0.12 -2.20 6.35 31.67 0.20 -2.00 16 21 C -0.12 -1.62 6.91 31.88 0.22 -1.40 16 22 C -0.13 -1.78 6.83 31.67 0.22 -1.56 16 23 C -0.12 -1.87 6.45 31.32 0.20 -1.67 16 24 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 25 H 0.02 0.92 6.48 -2.39 -0.02 0.90 16 26 H 0.05 2.13 7.32 -2.39 -0.02 2.12 16 27 H 0.11 2.52 6.10 -2.39 -0.01 2.51 16 28 H 0.09 2.45 7.63 -2.38 -0.02 2.44 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.10 2.90 8.03 -2.39 -0.02 2.88 16 32 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.16 3.64 6.05 -2.91 -0.02 3.62 16 35 H 0.10 3.24 7.49 -2.91 -0.02 3.22 16 36 H 0.10 1.52 7.84 -2.39 -0.02 1.50 16 37 H 0.05 1.15 7.85 -2.39 -0.02 1.13 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 Total: -1.00 -79.01 356.46 4.96 -74.06 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.90 Total: 18.73 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 3.98 Total: -19.48 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.74 Total: -88.12 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.06 Total: -32.75 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -79.01 4.96 -74.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493330470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.396 kcal (2) G-P(sol) polarization free energy of solvation -79.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds