Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48506 * 109.47137 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47033 * 120.00375 * 3 2 1 7 7 C 1.37880 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.53036 * 109.46006 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31738 * 181.36817 * 10 9 7 12 12 N 1.46925 * 108.77417 * 305.36373 * 11 10 9 13 13 C 1.34774 * 120.63100 * 233.58359 * 12 11 10 14 14 O 1.21614 * 120.00321 * 354.67635 * 13 12 11 15 15 C 1.47110 * 120.00201 * 174.68312 * 13 12 11 16 16 C 1.32985 * 119.99893 * 190.33202 * 15 13 12 17 17 C 1.50699 * 120.00429 * 19.76300 * 16 15 13 18 18 C 1.54269 * 110.03316 * 236.59764 * 17 16 15 19 19 C 1.54883 * 104.19520 * 217.10322 * 18 17 16 20 20 C 1.54886 * 102.75260 * 37.94018 * 19 18 17 21 21 C 1.53874 * 110.03727 * 119.42915 * 17 16 15 22 22 C 1.46930 * 118.73998 * 53.85687 * 12 11 10 23 23 C 1.53048 * 109.44719 * 300.05351 * 9 7 2 24 24 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46328 * 60.02027 * 9 7 2 26 26 H 1.09000 * 109.50162 * 61.41416 * 10 9 7 27 27 H 1.09005 * 109.49560 * 301.31964 * 10 9 7 28 28 H 1.08995 * 109.59035 * 185.57504 * 11 10 9 29 29 H 1.09000 * 109.70562 * 65.21749 * 11 10 9 30 30 H 1.08002 * 119.99685 * 10.32489 * 15 13 12 31 31 H 1.08008 * 119.99594 * 200.02967 * 16 15 13 32 32 H 1.09000 * 110.01398 * 358.03702 * 17 16 15 33 33 H 1.09004 * 110.48441 * 335.78386 * 18 17 16 34 34 H 1.09005 * 110.48711 * 98.42207 * 18 17 16 35 35 H 1.09006 * 110.75701 * 279.62485 * 19 18 17 36 36 H 1.09005 * 110.75624 * 156.25687 * 19 18 17 37 37 H 1.08995 * 110.48934 * 203.37808 * 20 19 18 38 38 H 1.09005 * 110.59604 * 80.78746 * 20 19 18 39 39 H 1.08992 * 110.03345 * 238.57577 * 21 17 16 40 40 H 1.09006 * 110.03123 * 0.02562 * 21 17 16 41 41 H 1.09007 * 109.58534 * 65.92598 * 22 12 11 42 42 H 1.09001 * 109.58650 * 186.34867 * 22 12 11 43 43 H 1.08996 * 109.49630 * 298.57682 * 23 9 7 44 44 H 1.09003 * 109.49018 * 58.67408 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2454 -3.6623 0.0005 11 6 1.4764 -4.9867 -0.0340 12 7 0.5223 -5.0087 1.0831 13 6 0.5115 -6.0348 1.9568 14 8 1.2285 -6.9993 1.7710 15 6 -0.3676 -5.9881 3.1354 16 6 -0.2340 -6.8930 4.1008 17 6 1.0498 -7.6711 4.2319 18 6 0.7591 -9.1848 4.1692 19 6 1.7532 -9.8048 5.1822 20 6 1.7672 -8.7634 6.3286 21 6 1.6908 -7.4032 5.6049 22 6 -0.4240 -3.8938 1.2261 23 6 0.3697 -2.5787 1.2493 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5571 -0.8899 26 1 2.8556 -3.6193 0.9028 27 1 2.8878 -3.5916 -0.8773 28 1 2.1748 -5.8175 0.0656 29 1 0.9369 -5.0739 -0.9771 30 1 -1.1214 -5.2189 3.2167 31 1 -1.0474 -7.0732 4.7882 32 1 1.7397 -7.3894 3.4364 33 1 -0.2687 -9.3887 4.4697 34 1 0.9475 -9.5683 3.1663 35 1 2.7441 -9.9050 4.7392 36 1 1.3897 -10.7682 5.5400 37 1 2.6912 -8.8393 6.9017 38 1 0.9033 -8.8981 6.9796 39 1 2.6920 -6.9922 5.4758 40 1 1.0730 -6.7106 6.1767 41 1 -1.1155 -3.8911 0.3834 42 1 -0.9799 -4.0035 2.1572 43 1 0.9971 -2.5458 2.1400 44 1 -0.3228 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493479460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -32.678813 kcal Electronic energy + Delta-G solvation = -21914.387520 eV Core-core repulsion = 18831.185213 eV Total energy + Delta-G solvation = -3083.202307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88875 -38.20415 -36.70866 -33.50812 -33.17021 -31.24369 -30.03888 -28.66145 -28.06288 -26.17166 -23.60435 -22.53470 -21.56486 -20.67204 -20.10663 -19.25928 -17.96903 -17.02416 -16.22009 -15.72349 -15.43828 -14.88707 -14.56866 -14.31235 -13.83074 -13.37157 -13.34053 -13.04065 -12.80613 -12.68545 -12.41239 -12.28586 -11.68586 -11.58133 -11.33273 -11.16389 -11.04678 -10.94142 -10.77275 -10.69998 -10.64816 -10.50116 -10.38264 -10.10511 -9.62854 -9.27734 -9.14891 -8.97385 -8.77120 -8.38224 -7.92238 -6.04056 -4.10285 1.50292 3.29028 3.33770 3.36825 3.54901 3.62457 4.39992 4.62766 4.69193 4.72201 4.94755 5.12013 5.25593 5.42891 5.46204 5.57608 5.62604 5.63519 5.70312 5.74792 5.80738 5.86748 5.88943 5.97876 6.03003 6.10806 6.15708 6.24191 6.27244 6.30494 6.39475 6.47387 6.49848 6.65824 6.82189 6.91308 7.05136 7.16744 7.28800 7.65730 7.91346 7.98384 8.03617 8.39281 8.62607 8.92896 9.54766 11.01344 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.003617 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.406821 B = 7738.878460 C = 7919.489171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.595 5.595 13 C 0.542 3.458 14 O -0.555 6.555 15 C -0.220 4.220 16 C -0.059 4.059 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.101 3.899 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -13.986 9.266 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.326 5.326 13 C 0.333 3.667 14 O -0.438 6.438 15 C -0.241 4.241 16 C -0.079 4.079 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.021 4.021 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.414 -14.311 9.130 17.034 hybrid contribution 0.214 1.228 0.051 1.248 sum -1.200 -13.083 9.180 16.027 Atomic orbital electron populations 1.69828 1.05845 1.26566 1.50870 1.24958 0.94878 0.99045 0.95067 0.86673 0.79633 0.83160 0.78625 1.20310 1.21308 1.20330 1.21176 0.92918 0.90606 1.50390 0.92764 1.18629 0.92644 0.91695 0.94001 1.22004 0.98900 0.94265 1.00930 1.21682 0.91715 0.99597 0.88020 1.48193 1.35496 1.20882 1.28048 1.18593 0.82224 0.82236 0.83619 1.90582 1.43987 1.33092 1.76099 1.22824 1.03761 1.01464 0.96036 1.23660 0.96213 0.92679 0.95344 1.21649 0.95969 0.94816 0.99342 1.22271 0.98529 0.94259 0.99444 1.22507 0.99828 0.97802 0.96170 1.22367 1.01246 0.95033 0.97494 1.22189 1.00672 0.97160 0.95357 1.22207 0.91568 0.87565 1.00784 1.22097 0.99981 0.94561 0.99544 0.92926 0.95495 0.92994 0.92160 0.90403 0.92349 0.85098 0.86350 0.85829 0.92270 0.91329 0.91532 0.91978 0.92007 0.91924 0.91707 0.91970 0.91994 0.91170 0.94208 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 11.30 55.43 0.63 -23.73 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.53 5.30 -26.62 -0.14 -2.67 16 11 C 0.11 2.08 6.41 -3.71 -0.02 2.05 16 12 N -0.60 -10.86 2.97 -173.90 -0.52 -11.37 16 13 C 0.54 9.55 7.37 -12.66 -0.09 9.46 16 14 O -0.56 -10.74 12.95 5.27 0.07 -10.67 16 15 C -0.22 -3.15 9.28 -37.80 -0.35 -3.50 16 16 C -0.06 -0.74 8.41 -36.13 -0.30 -1.04 16 17 C -0.10 -1.30 2.61 -90.65 -0.24 -1.54 16 18 C -0.11 -1.24 6.35 -25.07 -0.16 -1.40 16 19 C -0.13 -1.24 6.91 -24.74 -0.17 -1.41 16 20 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 21 C -0.12 -1.30 6.45 -25.61 -0.17 -1.46 16 22 C 0.10 1.81 6.38 -3.49 -0.02 1.79 16 23 C -0.12 -2.71 5.17 -26.39 -0.14 -2.85 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.42 7.04 -51.93 -0.37 1.06 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.13 1.65 5.92 -52.49 -0.31 1.34 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.12 2.02 4.82 -52.08 -0.25 1.77 16 33 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.65 7.67 -51.93 -0.40 0.26 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.08 5.32 -51.93 -0.28 0.80 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -28.14 337.93 -9.66 -37.80 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.36 Total: 2.43 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.55 Total: -15.33 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.11 Total: -35.10 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.14 -9.66 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493479460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.120 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds