Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48506 * 109.47137 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47033 * 120.00375 * 3 2 1 7 7 C 1.37880 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.53036 * 109.46006 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31738 * 181.36817 * 10 9 7 12 12 N 1.46925 * 108.77417 * 305.36373 * 11 10 9 13 13 C 1.34774 * 120.63100 * 233.58359 * 12 11 10 14 14 O 1.21614 * 120.00321 * 354.67635 * 13 12 11 15 15 C 1.47110 * 120.00201 * 174.68312 * 13 12 11 16 16 C 1.32985 * 119.99893 * 190.33202 * 15 13 12 17 17 C 1.50699 * 120.00429 * 19.76300 * 16 15 13 18 18 C 1.54269 * 110.03316 * 236.59764 * 17 16 15 19 19 C 1.54883 * 104.19520 * 217.10322 * 18 17 16 20 20 C 1.54886 * 102.75260 * 37.94018 * 19 18 17 21 21 C 1.53874 * 110.03727 * 119.42915 * 17 16 15 22 22 C 1.46930 * 118.73998 * 53.85687 * 12 11 10 23 23 C 1.53048 * 109.44719 * 300.05351 * 9 7 2 24 24 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46328 * 60.02027 * 9 7 2 26 26 H 1.09000 * 109.50162 * 61.41416 * 10 9 7 27 27 H 1.09005 * 109.49560 * 301.31964 * 10 9 7 28 28 H 1.08995 * 109.59035 * 185.57504 * 11 10 9 29 29 H 1.09000 * 109.70562 * 65.21749 * 11 10 9 30 30 H 1.08002 * 119.99685 * 10.32489 * 15 13 12 31 31 H 1.08008 * 119.99594 * 200.02967 * 16 15 13 32 32 H 1.09000 * 110.01398 * 358.03702 * 17 16 15 33 33 H 1.09004 * 110.48441 * 335.78386 * 18 17 16 34 34 H 1.09005 * 110.48711 * 98.42207 * 18 17 16 35 35 H 1.09006 * 110.75701 * 279.62485 * 19 18 17 36 36 H 1.09005 * 110.75624 * 156.25687 * 19 18 17 37 37 H 1.08995 * 110.48934 * 203.37808 * 20 19 18 38 38 H 1.09005 * 110.59604 * 80.78746 * 20 19 18 39 39 H 1.08992 * 110.03345 * 238.57577 * 21 17 16 40 40 H 1.09006 * 110.03123 * 0.02562 * 21 17 16 41 41 H 1.09007 * 109.58534 * 65.92598 * 22 12 11 42 42 H 1.09001 * 109.58650 * 186.34867 * 22 12 11 43 43 H 1.08996 * 109.49630 * 298.57682 * 23 9 7 44 44 H 1.09003 * 109.49018 * 58.67408 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2454 -3.6623 0.0005 11 6 1.4764 -4.9867 -0.0340 12 7 0.5223 -5.0087 1.0831 13 6 0.5115 -6.0348 1.9568 14 8 1.2285 -6.9993 1.7710 15 6 -0.3676 -5.9881 3.1354 16 6 -0.2340 -6.8930 4.1008 17 6 1.0498 -7.6711 4.2319 18 6 0.7591 -9.1848 4.1692 19 6 1.7532 -9.8048 5.1822 20 6 1.7672 -8.7634 6.3286 21 6 1.6908 -7.4032 5.6049 22 6 -0.4240 -3.8938 1.2261 23 6 0.3697 -2.5787 1.2493 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5571 -0.8899 26 1 2.8556 -3.6193 0.9028 27 1 2.8878 -3.5916 -0.8773 28 1 2.1748 -5.8175 0.0656 29 1 0.9369 -5.0739 -0.9771 30 1 -1.1214 -5.2189 3.2167 31 1 -1.0474 -7.0732 4.7882 32 1 1.7397 -7.3894 3.4364 33 1 -0.2687 -9.3887 4.4697 34 1 0.9475 -9.5683 3.1663 35 1 2.7441 -9.9050 4.7392 36 1 1.3897 -10.7682 5.5400 37 1 2.6912 -8.8393 6.9017 38 1 0.9033 -8.8981 6.9796 39 1 2.6920 -6.9922 5.4758 40 1 1.0730 -6.7106 6.1767 41 1 -1.1155 -3.8911 0.3834 42 1 -0.9799 -4.0035 2.1572 43 1 0.9971 -2.5458 2.1400 44 1 -0.3228 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493479460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -45.810448 kcal Electronic energy + Delta-G solvation = -21914.956950 eV Core-core repulsion = 18831.185213 eV Total energy + Delta-G solvation = -3083.771737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24501 -39.29787 -38.16833 -35.31829 -34.26691 -32.98615 -31.66637 -29.51204 -29.12927 -27.90160 -25.18114 -24.13658 -22.98832 -21.47897 -21.27273 -20.69805 -19.39115 -18.56716 -17.96992 -16.80902 -16.63966 -16.40964 -16.16693 -15.57951 -15.05375 -14.80178 -14.72717 -14.36562 -14.19919 -14.09269 -13.89378 -13.55491 -13.22446 -13.08454 -12.80059 -12.60771 -12.48428 -12.14826 -11.96500 -11.94134 -11.89589 -11.70165 -11.65076 -11.44164 -11.43301 -11.01346 -10.79461 -10.47484 -10.39464 -9.94307 -9.43101 -8.07923 -6.21475 0.39740 1.42752 1.43066 1.50654 2.17613 2.32113 2.44181 3.18282 3.69226 3.75920 3.83131 3.85694 4.11342 4.22250 4.32870 4.37173 4.49035 4.53333 4.58220 4.59232 4.70934 4.72685 4.78405 4.83329 4.86386 4.88243 4.97507 5.02470 5.11414 5.18099 5.19626 5.24306 5.36438 5.39402 5.43359 5.46727 5.51480 5.60375 5.68363 5.78561 5.98352 6.13507 6.38913 6.59400 6.87595 7.25711 7.46097 8.95245 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.003617 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.406821 B = 7738.878460 C = 7919.489171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.118 3.882 12 N -0.603 5.603 13 C 0.536 3.464 14 O -0.578 6.578 15 C -0.245 4.245 16 C -0.035 4.035 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.115 4.115 22 C 0.112 3.888 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.002 0.998 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.027 0.973 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -14.859 11.161 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.334 5.334 13 C 0.330 3.670 14 O -0.462 6.462 15 C -0.265 4.265 16 C -0.055 4.055 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.010 4.010 23 C -0.152 4.152 24 H 0.071 0.929 25 H 0.020 0.980 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.168 0.832 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.046 0.954 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.249 -15.192 11.027 18.907 hybrid contribution 0.527 1.442 -0.530 1.625 sum -1.722 -13.750 10.497 17.384 Atomic orbital electron populations 1.69942 1.06802 1.27231 1.51080 1.25635 0.95720 1.01943 0.94786 0.85754 0.78537 0.79594 0.78593 1.20025 1.20724 1.20010 1.21522 0.92888 0.92312 1.50834 0.93528 1.18599 0.93030 0.91873 0.93760 1.21844 0.98299 0.94410 1.00500 1.21540 0.91929 0.98120 0.88884 1.48236 1.35600 1.21328 1.28252 1.19205 0.82149 0.81505 0.84189 1.90590 1.45065 1.33891 1.76650 1.22819 1.04370 1.03609 0.95719 1.24049 0.96326 0.90403 0.94678 1.21618 0.95755 0.96012 0.99253 1.22252 1.00000 0.93175 0.98922 1.22509 0.98936 0.98829 0.95858 1.22359 1.02535 0.93353 0.97283 1.22177 0.99981 0.98600 0.94548 1.22067 0.90942 0.85324 1.02621 1.21858 0.99296 0.96158 0.97929 0.92872 0.97967 0.94070 0.91873 0.90249 0.91588 0.83162 0.82534 0.89537 0.90565 0.93461 0.92495 0.90110 0.91135 0.90192 0.92951 0.90866 0.91773 0.87960 0.95403 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 11.30 21.45 0.24 -50.12 16 2 C 0.02 0.98 5.30 84.66 0.45 1.43 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.24 8.56 25.60 0.22 -29.02 16 8 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.05 2.24 2.06 -11.51 -0.02 2.21 16 10 C -0.11 -4.73 5.30 30.67 0.16 -4.56 16 11 C 0.12 4.40 6.41 86.36 0.55 4.96 16 12 N -0.60 -21.80 2.97 -822.34 -2.44 -24.24 16 13 C 0.54 18.60 7.37 86.57 0.64 19.24 16 14 O -0.58 -22.54 12.95 -4.08 -0.05 -22.59 16 15 C -0.24 -6.50 9.28 23.43 0.22 -6.28 16 16 C -0.04 -0.78 8.41 24.52 0.21 -0.57 16 17 C -0.11 -2.66 2.61 -10.81 -0.03 -2.69 16 18 C -0.11 -2.26 6.35 31.67 0.20 -2.06 16 19 C -0.12 -2.17 6.91 31.88 0.22 -1.95 16 20 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 21 C -0.12 -2.35 6.45 31.32 0.20 -2.15 16 22 C 0.11 3.96 6.38 86.51 0.55 4.51 16 23 C -0.11 -5.07 5.17 30.82 0.16 -4.91 16 24 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 28 H 0.08 2.94 7.04 -2.39 -0.02 2.92 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.15 3.33 5.92 -2.91 -0.02 3.32 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.09 2.85 4.82 -4.75 -0.02 2.83 16 33 H 0.08 1.36 7.85 -2.38 -0.02 1.34 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.32 7.67 -2.38 -0.02 1.30 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.10 2.94 5.32 -2.39 -0.01 2.92 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 Total: -1.00 -61.74 337.93 4.67 -57.07 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.95 Total: 18.49 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.94 Total: -23.51 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.20 Total: -74.36 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.74 4.67 -57.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493479460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.260 kcal (2) G-P(sol) polarization free energy of solvation -61.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds