Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00204 * 2 1 4 4 H 1.48500 * 109.46905 * 240.00008 * 3 2 1 5 5 H 1.48497 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47168 * 120.00044 * 3 2 1 7 7 C 1.37871 * 119.99380 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46006 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31183 * 178.61387 * 10 9 7 12 12 N 1.46931 * 108.77356 * 54.63975 * 11 10 9 13 13 C 1.34777 * 120.63463 * 126.37025 * 12 11 10 14 14 O 1.21283 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.50690 * 120.00347 * 179.97438 * 13 12 11 16 16 H 1.09007 * 115.55011 * 34.27667 * 15 13 12 17 17 C 1.53000 * 117.50063 * 248.60878 * 15 13 12 18 18 C 1.53002 * 60.02940 * 252.49714 * 17 15 13 19 19 H 1.09000 * 117.49996 * 107.50493 * 18 17 15 20 20 C 1.53002 * 117.49773 * 252.51785 * 18 17 15 21 21 C 1.53777 * 113.61709 * 227.74909 * 20 18 17 22 22 C 1.53954 * 87.01934 * 220.04944 * 21 20 18 23 23 C 1.53785 * 87.11497 * 25.36151 * 22 21 20 24 24 C 1.46927 * 118.73389 * 306.63937 * 12 11 10 25 25 C 1.52757 * 109.00868 * 53.31490 * 24 12 11 26 26 H 0.97000 * 119.99528 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.45218 * 299.96518 * 9 7 2 28 28 H 1.08998 * 109.49679 * 58.66477 * 10 9 7 29 29 H 1.09001 * 109.52819 * 298.58117 * 10 9 7 30 30 H 1.09000 * 109.58804 * 294.84901 * 11 10 9 31 31 H 1.08997 * 109.58507 * 174.42050 * 11 10 9 32 32 H 1.09002 * 117.49833 * 359.97438 * 17 15 13 33 33 H 1.09002 * 117.49953 * 144.99860 * 17 15 13 34 34 H 1.09005 * 112.84809 * 358.94445 * 20 18 17 35 35 H 1.08995 * 113.61141 * 334.56347 * 21 20 18 36 36 H 1.08996 * 113.61798 * 105.47083 * 21 20 18 37 37 H 1.09002 * 113.53528 * 270.81075 * 22 21 20 38 38 H 1.09004 * 113.66758 * 139.92970 * 22 21 20 39 39 H 1.08991 * 113.61463 * 220.09352 * 23 22 21 40 40 H 1.08993 * 113.68960 * 89.19642 * 23 22 21 41 41 H 1.09002 * 109.58356 * 173.14919 * 24 12 11 42 42 H 1.09002 * 109.59162 * 293.56946 * 24 12 11 43 43 H 1.08999 * 109.56128 * 185.55007 * 25 24 12 44 44 H 1.08998 * 109.38606 * 65.51297 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2456 -3.6622 0.0015 11 6 1.4765 -4.9866 0.0376 12 7 0.5212 -5.0093 -1.0786 13 6 0.5102 -6.0355 -1.9522 14 8 1.2940 -6.9517 -1.8214 15 6 -0.4761 -6.0446 -3.0915 16 1 -0.7175 -5.0683 -3.5122 17 6 -1.5904 -7.0923 -3.0530 18 6 -0.4387 -7.2377 -4.0497 19 1 0.2992 -8.0162 -3.8560 20 6 -0.7428 -6.9688 -5.5249 21 6 -0.2057 -8.0543 -6.4725 22 6 0.1830 -6.9129 -7.4297 23 6 0.2498 -6.0023 -6.1923 24 6 -0.4177 -3.8891 -1.2277 25 6 0.3690 -2.5797 -1.2464 26 1 -0.4849 0.8401 -0.0004 27 1 0.6252 -2.5562 0.8924 28 1 2.8888 -3.5910 0.8785 29 1 2.8552 -3.6201 -0.9012 30 1 0.9377 -5.0707 0.9814 31 1 2.1748 -5.8175 -0.0622 32 1 -1.6099 -7.7753 -2.2038 33 1 -2.5649 -6.8054 -3.4484 34 1 -1.7875 -6.7128 -5.7018 35 1 0.6496 -8.5988 -6.0724 36 1 -0.9803 -8.7117 -6.8672 37 1 -0.6085 -6.6424 -8.1286 38 1 1.1472 -7.0594 -7.9166 39 1 -0.1577 -5.0056 -6.3611 40 1 1.2293 -5.9838 -5.7146 41 1 -0.9687 -3.9961 -2.1620 42 1 -1.1141 -3.8818 -0.3892 43 1 -0.3236 -1.7381 -1.2575 44 1 0.9957 -2.5469 -2.1376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517034442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = -7.712136 kcal Electronic energy + Delta-G solvation = -21966.875744 eV Core-core repulsion = 18884.756073 eV Total energy + Delta-G solvation = -3082.119670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14684 -38.87406 -36.96003 -35.45726 -33.48307 -31.25268 -30.11606 -26.84926 -26.02848 -25.68088 -24.15309 -22.61018 -22.00681 -21.09756 -19.64418 -19.38004 -18.20506 -17.10718 -16.21295 -15.79826 -15.45267 -15.14881 -14.60332 -14.51873 -13.79594 -13.36054 -13.12484 -12.88688 -12.73806 -12.58975 -12.51567 -12.31132 -12.05887 -11.86752 -11.61496 -11.27453 -10.95394 -10.91088 -10.73429 -10.67554 -10.57496 -10.39020 -10.11593 -9.96821 -9.81265 -9.63963 -9.34565 -9.17758 -8.91864 -8.38608 -7.98330 -6.04168 -4.10338 2.82491 3.29057 3.33727 3.36866 3.43299 3.87171 4.39963 4.44674 4.55157 4.60931 4.77174 4.90583 5.00049 5.04968 5.23065 5.26842 5.37045 5.58487 5.64476 5.66910 5.69115 5.71012 5.78586 5.82889 5.90792 5.92616 6.06370 6.10879 6.12122 6.15646 6.25455 6.33147 6.44488 6.46365 6.66204 6.89940 7.03985 7.15271 7.27407 7.65300 7.90991 7.95967 8.03223 8.39234 8.60798 8.92798 9.54769 11.01310 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.004047 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.668719 B = 6916.952394 C = 7511.626173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.595 5.595 13 C 0.540 3.460 14 O -0.562 6.562 15 C -0.181 4.181 16 H 0.125 0.875 17 C -0.150 4.150 18 C -0.110 4.110 19 H 0.116 0.884 20 C -0.082 4.082 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.135 4.135 24 C 0.104 3.896 25 C -0.125 4.125 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -12.148 -9.903 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.327 5.327 13 C 0.328 3.672 14 O -0.442 6.442 15 C -0.202 4.202 16 H 0.142 0.858 17 C -0.188 4.188 18 C -0.128 4.128 19 H 0.134 0.866 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.182 4.182 23 C -0.172 4.172 24 C -0.018 4.018 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.370 -12.470 -9.805 16.454 hybrid contribution 0.403 1.222 0.092 1.290 sum -3.967 -11.248 -9.713 15.381 Atomic orbital electron populations 1.69828 1.05840 1.26559 1.50892 1.24951 0.94873 0.99025 0.95056 0.86674 0.79637 0.83166 0.78628 1.20340 1.21296 1.20304 1.21177 0.92923 0.90608 1.50378 0.92770 1.18624 0.92630 0.91696 0.93988 1.22009 0.98918 0.94255 1.00961 1.21699 0.91758 0.99700 0.87923 1.48156 1.35930 1.20908 1.27657 1.19582 0.83662 0.81721 0.82214 1.90617 1.41759 1.36790 1.75068 1.22286 1.01448 0.96865 0.99601 0.85760 1.23029 0.93374 1.00359 1.02001 1.22374 1.00935 0.99000 0.90539 0.86633 1.22174 0.99209 0.97378 0.91250 1.22969 1.00954 0.96194 0.96874 1.22850 1.01570 0.97190 0.96572 1.22924 1.00199 0.97782 0.96342 1.21975 0.91676 0.87324 1.00815 1.21955 1.00130 0.94724 0.99575 0.92931 0.95471 0.92162 0.92991 0.92237 0.90421 0.88554 0.88059 0.89130 0.89943 0.91634 0.90396 0.91550 0.91474 0.89760 0.91268 0.92022 0.87726 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 11.30 55.43 0.63 -23.71 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.67 8.56 -34.44 -0.29 -13.97 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 11 C 0.11 2.09 6.44 -3.71 -0.02 2.07 16 12 N -0.60 -10.95 2.98 -173.03 -0.52 -11.46 16 13 C 0.54 9.67 7.48 -10.99 -0.08 9.59 16 14 O -0.56 -11.56 15.67 5.56 0.09 -11.47 16 15 C -0.18 -2.53 4.69 -91.74 -0.43 -2.96 16 16 H 0.12 1.66 6.55 -51.93 -0.34 1.32 16 17 C -0.15 -1.73 9.92 -26.73 -0.27 -2.00 16 18 C -0.11 -1.34 5.05 -90.58 -0.46 -1.79 16 19 H 0.12 1.59 7.50 -51.93 -0.39 1.20 16 20 C -0.08 -0.82 3.87 -89.80 -0.35 -1.17 16 21 C -0.13 -1.20 7.65 -25.83 -0.20 -1.39 16 22 C -0.14 -1.27 8.09 -25.83 -0.21 -1.48 16 23 C -0.14 -1.41 7.49 -25.91 -0.19 -1.61 16 24 C 0.10 1.88 6.32 -3.93 -0.02 1.85 16 25 C -0.13 -2.76 5.14 -26.83 -0.14 -2.89 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.07 1.07 5.51 -51.93 -0.29 0.79 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -28.68 344.65 -10.28 -38.95 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.56 Total: 2.63 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.09 Total: -15.92 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.11 Total: -35.17 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.68 -10.28 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517034442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.242 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds