Wall clock time and date at job start Mon Mar 30 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00204 * 2 1 4 4 H 1.48500 * 109.46905 * 240.00008 * 3 2 1 5 5 H 1.48497 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47168 * 120.00044 * 3 2 1 7 7 C 1.37871 * 119.99380 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46006 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31183 * 178.61387 * 10 9 7 12 12 N 1.46931 * 108.77356 * 54.63975 * 11 10 9 13 13 C 1.34777 * 120.63463 * 126.37025 * 12 11 10 14 14 O 1.21283 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.50690 * 120.00347 * 179.97438 * 13 12 11 16 16 H 1.09007 * 115.55011 * 34.27667 * 15 13 12 17 17 C 1.53000 * 117.50063 * 248.60878 * 15 13 12 18 18 C 1.53002 * 60.02940 * 252.49714 * 17 15 13 19 19 H 1.09000 * 117.49996 * 107.50493 * 18 17 15 20 20 C 1.53002 * 117.49773 * 252.51785 * 18 17 15 21 21 C 1.53777 * 113.61709 * 227.74909 * 20 18 17 22 22 C 1.53954 * 87.01934 * 220.04944 * 21 20 18 23 23 C 1.53785 * 87.11497 * 25.36151 * 22 21 20 24 24 C 1.46927 * 118.73389 * 306.63937 * 12 11 10 25 25 C 1.52757 * 109.00868 * 53.31490 * 24 12 11 26 26 H 0.97000 * 119.99528 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.45218 * 299.96518 * 9 7 2 28 28 H 1.08998 * 109.49679 * 58.66477 * 10 9 7 29 29 H 1.09001 * 109.52819 * 298.58117 * 10 9 7 30 30 H 1.09000 * 109.58804 * 294.84901 * 11 10 9 31 31 H 1.08997 * 109.58507 * 174.42050 * 11 10 9 32 32 H 1.09002 * 117.49833 * 359.97438 * 17 15 13 33 33 H 1.09002 * 117.49953 * 144.99860 * 17 15 13 34 34 H 1.09005 * 112.84809 * 358.94445 * 20 18 17 35 35 H 1.08995 * 113.61141 * 334.56347 * 21 20 18 36 36 H 1.08996 * 113.61798 * 105.47083 * 21 20 18 37 37 H 1.09002 * 113.53528 * 270.81075 * 22 21 20 38 38 H 1.09004 * 113.66758 * 139.92970 * 22 21 20 39 39 H 1.08991 * 113.61463 * 220.09352 * 23 22 21 40 40 H 1.08993 * 113.68960 * 89.19642 * 23 22 21 41 41 H 1.09002 * 109.58356 * 173.14919 * 24 12 11 42 42 H 1.09002 * 109.59162 * 293.56946 * 24 12 11 43 43 H 1.08999 * 109.56128 * 185.55007 * 25 24 12 44 44 H 1.08998 * 109.38606 * 65.51297 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2456 -3.6622 0.0015 11 6 1.4765 -4.9866 0.0376 12 7 0.5212 -5.0093 -1.0786 13 6 0.5102 -6.0355 -1.9522 14 8 1.2940 -6.9517 -1.8214 15 6 -0.4761 -6.0446 -3.0915 16 1 -0.7175 -5.0683 -3.5122 17 6 -1.5904 -7.0923 -3.0530 18 6 -0.4387 -7.2377 -4.0497 19 1 0.2992 -8.0162 -3.8560 20 6 -0.7428 -6.9688 -5.5249 21 6 -0.2057 -8.0543 -6.4725 22 6 0.1830 -6.9129 -7.4297 23 6 0.2498 -6.0023 -6.1923 24 6 -0.4177 -3.8891 -1.2277 25 6 0.3690 -2.5797 -1.2464 26 1 -0.4849 0.8401 -0.0004 27 1 0.6252 -2.5562 0.8924 28 1 2.8888 -3.5910 0.8785 29 1 2.8552 -3.6201 -0.9012 30 1 0.9377 -5.0707 0.9814 31 1 2.1748 -5.8175 -0.0622 32 1 -1.6099 -7.7753 -2.2038 33 1 -2.5649 -6.8054 -3.4484 34 1 -1.7875 -6.7128 -5.7018 35 1 0.6496 -8.5988 -6.0724 36 1 -0.9803 -8.7117 -6.8672 37 1 -0.6085 -6.6424 -8.1286 38 1 1.1472 -7.0594 -7.9166 39 1 -0.1577 -5.0056 -6.3611 40 1 1.2293 -5.9838 -5.7146 41 1 -0.9687 -3.9961 -2.1620 42 1 -1.1141 -3.8818 -0.3892 43 1 -0.3236 -1.7381 -1.2575 44 1 0.9957 -2.5469 -2.1376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517034442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:06 Heat of formation + Delta-G solvation = -20.938344 kcal Electronic energy + Delta-G solvation = -21967.449275 eV Core-core repulsion = 18884.756073 eV Total energy + Delta-G solvation = -3082.693202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42807 -39.90033 -38.47642 -36.54535 -35.32638 -33.05408 -31.78179 -28.36227 -27.22318 -26.43349 -25.55729 -24.24912 -23.51372 -22.05325 -21.15162 -20.25045 -19.65599 -18.66812 -18.02299 -17.05711 -16.55074 -16.44872 -16.17511 -15.80614 -15.15691 -14.87640 -14.64592 -14.57784 -14.11164 -13.91355 -13.44098 -13.31510 -13.29497 -13.16393 -13.10644 -12.80946 -12.65897 -12.47932 -12.15848 -11.99217 -11.82374 -11.52021 -11.48184 -11.36104 -11.03236 -11.01905 -10.86392 -10.66687 -10.60479 -10.39216 -9.56127 -8.08316 -6.21662 1.42617 1.43118 1.49444 1.50690 2.05267 2.43883 2.83232 3.18160 3.43170 3.66986 3.76689 3.88401 3.97445 4.04094 4.14966 4.21408 4.24837 4.31109 4.33260 4.48549 4.52681 4.55960 4.74017 4.81452 4.84513 4.90307 4.91224 4.92892 4.96773 5.05255 5.12992 5.14505 5.16497 5.24122 5.29015 5.41075 5.42321 5.54191 5.64423 5.68660 5.97386 6.12081 6.38427 6.51027 6.87046 7.17599 7.45981 8.95019 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.004047 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.668719 B = 6916.952394 C = 7511.626173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.600 5.600 13 C 0.536 3.464 14 O -0.594 6.594 15 C -0.198 4.198 16 H 0.135 0.865 17 C -0.129 4.129 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.144 4.144 24 C 0.116 3.884 25 C -0.116 4.116 26 H 0.262 0.738 27 H 0.004 0.996 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -12.591 -11.179 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.331 5.331 13 C 0.326 3.674 14 O -0.476 6.476 15 C -0.219 4.219 16 H 0.152 0.848 17 C -0.166 4.166 18 C -0.124 4.124 19 H 0.113 0.887 20 C -0.095 4.095 21 C -0.168 4.168 22 C -0.175 4.175 23 C -0.181 4.181 24 C -0.006 4.006 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.754 -12.916 -11.083 17.966 hybrid contribution 0.880 1.347 0.514 1.689 sum -4.874 -11.568 -10.569 16.410 Atomic orbital electron populations 1.69935 1.06762 1.27242 1.51035 1.25613 0.95709 1.01866 0.94742 0.85765 0.78560 0.79660 0.78567 1.20094 1.20659 1.20027 1.21514 0.92872 0.92322 1.50915 0.93594 1.18596 0.93003 0.91820 0.93805 1.21854 0.98353 0.94427 1.00508 1.21588 0.91989 0.98192 0.88908 1.48218 1.35878 1.21269 1.27742 1.20261 0.83779 0.80803 0.82535 1.90597 1.43190 1.37892 1.75915 1.22254 1.02294 0.98287 0.99032 0.84782 1.23178 0.93972 0.98154 1.01288 1.22387 1.00901 0.97180 0.91922 0.88713 1.22242 1.00082 0.97559 0.89635 1.22955 1.01052 0.96271 0.96554 1.22854 1.02206 0.96280 0.96164 1.22928 0.99289 0.98447 0.97486 1.21846 0.91004 0.85043 1.02704 1.21724 0.99443 0.96302 0.97956 0.92849 0.97773 0.91793 0.94214 0.91118 0.90421 0.89062 0.84932 0.87111 0.90948 0.89975 0.88784 0.91546 0.91237 0.92028 0.88160 0.91559 0.89984 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.00 11.30 21.45 0.24 -49.76 16 2 C 0.02 1.07 5.30 84.65 0.45 1.52 16 3 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.22 8.56 25.60 0.22 -29.00 16 8 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 9 C 0.05 2.25 2.07 -11.51 -0.02 2.22 16 10 C -0.11 -4.78 5.30 30.67 0.16 -4.62 16 11 C 0.12 4.33 6.44 86.36 0.56 4.89 16 12 N -0.60 -21.70 2.98 -819.74 -2.44 -24.14 16 13 C 0.54 18.83 7.48 87.65 0.66 19.48 16 14 O -0.59 -24.45 15.67 -3.04 -0.05 -24.50 16 15 C -0.20 -5.18 4.69 -11.52 -0.05 -5.24 16 16 H 0.13 3.25 6.55 -2.38 -0.02 3.23 16 17 C -0.13 -2.59 9.92 30.60 0.30 -2.29 16 18 C -0.11 -2.38 5.05 -10.77 -0.05 -2.43 16 19 H 0.09 2.57 7.50 -2.39 -0.02 2.56 16 20 C -0.08 -1.35 3.87 -10.27 -0.04 -1.39 16 21 C -0.13 -2.08 7.65 31.18 0.24 -1.84 16 22 C -0.14 -2.13 8.09 31.18 0.25 -1.88 16 23 C -0.14 -2.81 7.49 31.12 0.23 -2.57 16 24 C 0.12 4.05 6.32 86.22 0.54 4.60 16 25 C -0.12 -5.12 5.14 30.53 0.16 -4.97 16 26 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 27 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.92 7.00 -2.39 -0.02 2.91 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.13 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.11 1.55 8.07 -2.38 -0.02 1.54 16 35 H 0.07 1.29 7.98 -2.39 -0.02 1.27 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.10 2.89 5.51 -2.39 -0.01 2.88 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 4.04 6.03 -2.39 -0.01 4.03 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -62.13 344.65 4.34 -57.80 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.96 Total: 19.33 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.60 Total: -23.51 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.20 Total: -73.90 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -62.13 4.34 -57.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517034442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.859 kcal (2) G-P(sol) polarization free energy of solvation -62.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds