Wall clock time and date at job start Mon Mar 30 2020 01:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39764 * 2 1 4 4 N 1.30502 * 108.70384 * 180.02562 * 3 2 1 5 5 C 1.34133 * 109.25197 * 0.02562 * 4 3 2 6 6 C 1.34669 * 108.02235 * 359.73051 * 5 4 3 7 7 C 1.50697 * 126.59585 * 180.28483 * 6 5 4 8 8 C 1.50698 * 109.47436 * 85.16051 * 7 6 5 9 9 O 1.21283 * 119.99332 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00252 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00207 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47182 * 90.00288 * 11 10 8 13 13 H 1.07998 * 120.00140 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00180 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99491 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00091 * 179.97438 * 14 12 11 17 17 H 1.48488 * 109.47311 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46773 * 119.99889 * 16 14 12 19 19 H 1.48502 * 109.46759 * 239.99321 * 16 14 12 20 20 C 1.46505 * 119.99841 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.47285 * 89.99671 * 20 10 8 22 22 C 1.52996 * 117.50156 * 243.62074 * 21 20 10 23 23 C 1.52997 * 60.00109 * 252.51136 * 22 21 20 24 24 H 1.09002 * 109.47391 * 90.01916 * 1 2 3 25 25 H 1.09001 * 109.46813 * 330.01972 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.02099 * 1 2 3 27 27 H 1.08005 * 125.64958 * 359.97107 * 3 2 1 28 28 H 1.07993 * 125.99008 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47299 * 205.16786 * 7 6 5 30 30 H 1.09007 * 109.46545 * 325.16209 * 7 6 5 31 31 H 1.09001 * 109.46874 * 210.00284 * 11 10 8 32 32 H 1.09004 * 109.46819 * 329.99813 * 11 10 8 33 33 H 0.96998 * 119.99680 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46631 * 209.99810 * 20 10 8 35 35 H 1.09000 * 109.47025 * 329.99591 * 20 10 8 36 36 H 1.09000 * 115.54637 * 29.33068 * 21 20 10 37 37 H 1.09003 * 117.49456 * 359.97438 * 22 21 20 38 38 H 1.08998 * 117.49698 * 145.01948 * 22 21 20 39 39 H 1.09000 * 117.49797 * 252.50898 * 23 22 21 40 40 H 1.09002 * 117.50168 * 107.48702 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 2.2773 -1.1018 0.0045 7 6 1.8363 -2.5428 0.0119 8 6 1.8085 -3.0525 1.4298 9 8 2.1161 -2.3176 2.3443 10 7 1.4420 -4.3247 1.6816 11 6 1.4144 -4.8200 3.0601 12 6 0.0514 -4.5758 3.6544 13 1 -0.7174 -4.0989 3.0646 14 6 -0.2140 -4.9602 4.9517 15 7 0.7224 -5.5404 5.6702 16 14 -1.9034 -4.6568 5.6887 17 1 -2.7708 -3.9939 4.6821 18 1 -2.5090 -5.9525 6.0882 19 1 -1.7731 -3.7825 6.8819 20 6 1.0711 -5.2124 0.5767 21 6 2.3162 -5.9418 0.0684 22 6 2.7598 -5.6646 -1.3694 23 6 2.1192 -7.0072 -1.0119 24 1 -0.3634 -0.0003 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.9334 2.1144 -0.0004 28 1 4.4368 -1.2611 -0.0025 29 1 0.8392 -2.6199 -0.4216 30 1 2.5347 -3.1394 -0.5751 31 1 1.6274 -5.8890 3.0663 32 1 2.1671 -4.2961 3.6494 33 1 0.5356 -5.8112 6.5827 34 1 0.3401 -5.9416 0.9263 35 1 0.6389 -4.6240 -0.2327 36 1 3.0949 -6.1160 0.8110 37 1 2.1642 -4.9628 -1.9533 38 1 3.8306 -5.6562 -1.5729 39 1 2.7685 -7.8821 -0.9803 40 1 1.1025 -7.1885 -1.3605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548191005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:37 Heat of formation + Delta-G solvation = 30.711571 kcal Electronic energy + Delta-G solvation = -21806.331448 eV Core-core repulsion = 18622.337611 eV Total energy + Delta-G solvation = -3183.993837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.01048 -40.68167 -38.33218 -36.13957 -34.93797 -34.61165 -33.13913 -29.96395 -28.22401 -27.77266 -27.29276 -24.77314 -23.14265 -22.36549 -21.87603 -21.23187 -19.83073 -18.61620 -18.14972 -17.96215 -17.08214 -16.49540 -16.46498 -16.09451 -15.78128 -15.32928 -14.74078 -14.64311 -14.39885 -14.29314 -13.98218 -13.73342 -13.62186 -13.45150 -13.14429 -13.09444 -12.82050 -12.57941 -12.52281 -12.24494 -12.21727 -11.70778 -11.22447 -10.97866 -10.89300 -10.66274 -10.61905 -10.39714 -9.44595 -9.27536 -8.23290 -6.38218 1.05129 1.34942 1.37406 1.48749 1.81770 1.97445 2.17590 2.32840 2.48869 3.00459 3.06649 3.59964 3.79278 3.90832 3.92029 3.97883 4.06561 4.11760 4.25384 4.31892 4.42671 4.44362 4.56567 4.69237 4.78363 4.85285 4.87169 4.89573 5.02173 5.11825 5.23050 5.35680 5.37218 5.40926 5.56037 5.78619 5.84520 6.05226 6.35339 6.69655 6.79350 7.13585 7.27702 7.48915 8.84291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.006267 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.134657 B = 4466.523361 C = 5974.430007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.457 5.457 3 C 0.180 3.820 4 N -0.535 5.535 5 C -0.042 4.042 6 C -0.009 4.009 7 C -0.048 4.048 8 C 0.501 3.499 9 O -0.591 6.591 10 N -0.597 5.597 11 C 0.263 3.737 12 C -0.538 4.538 13 H 0.057 0.943 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.285 1.285 20 C 0.141 3.859 21 C -0.195 4.195 22 C -0.165 4.165 23 C -0.163 4.163 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.241 0.759 28 H 0.165 0.835 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.020 0.980 32 H -0.008 1.008 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 3.868 -19.156 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.102 4.102 4 N -0.254 5.254 5 C -0.189 4.189 6 C -0.125 4.125 7 C -0.089 4.089 8 C 0.289 3.711 9 O -0.472 6.472 10 N -0.327 5.327 11 C 0.142 3.858 12 C -0.576 4.576 13 H 0.075 0.925 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.211 1.211 20 C 0.019 3.981 21 C -0.215 4.215 22 C -0.202 4.202 23 C -0.200 4.200 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.257 0.743 28 H 0.182 0.818 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.038 0.962 32 H 0.010 0.990 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.573 4.667 -18.511 19.263 hybrid contribution -0.972 -0.666 1.381 1.815 sum -3.545 4.001 -17.131 17.945 Atomic orbital electron populations 1.22326 0.74574 1.05419 1.05351 1.45443 1.08900 1.06080 1.53541 1.25580 0.85079 0.94773 1.04754 1.70176 1.21446 1.12237 1.21567 1.22129 0.96448 0.91445 1.08900 1.20683 0.91354 0.89591 1.10827 1.20111 1.05856 0.89621 0.93280 1.21121 0.76630 0.81567 0.91761 1.90680 1.50567 1.57082 1.48876 1.48143 1.65106 1.11142 1.08346 1.18681 0.95710 0.93149 0.78255 1.21722 0.98090 1.39235 0.98592 0.92497 1.25899 1.01490 0.94690 0.97314 1.70076 1.35154 1.41719 1.10125 0.85360 0.79028 0.78209 0.78171 1.18610 1.19470 1.21098 1.21273 0.95243 0.93044 0.88537 1.22667 1.00321 1.05450 0.93037 1.23207 1.01936 0.99674 0.95394 1.23010 1.03140 0.92928 1.00915 0.87234 0.87413 0.91138 0.74255 0.81814 0.85842 0.84498 0.96218 0.99026 0.92497 0.90714 0.87753 0.90391 0.86539 0.88373 0.88503 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 10.83 127.77 1.38 2.49 16 2 N -0.46 -11.90 3.15 -537.87 -1.70 -13.60 16 3 C 0.18 4.75 12.56 180.26 2.26 7.02 16 4 N -0.54 -18.11 11.25 -200.31 -2.25 -20.36 16 5 C -0.04 -1.41 11.79 83.52 0.98 -0.43 16 6 C -0.01 -0.27 5.45 40.95 0.22 -0.04 16 7 C -0.05 -1.31 4.43 29.10 0.13 -1.18 16 8 C 0.50 20.47 7.67 87.66 0.67 21.14 16 9 O -0.59 -31.38 15.61 -3.04 -0.05 -31.42 16 10 N -0.60 -24.64 2.46 -826.15 -2.03 -26.67 16 11 C 0.26 14.26 5.16 85.63 0.44 14.70 16 12 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 13 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 14 C 0.00 0.27 5.46 84.65 0.46 0.73 16 15 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 16 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 C 0.14 4.12 5.49 86.38 0.47 4.60 16 21 C -0.20 -4.94 5.95 -10.80 -0.06 -5.01 16 22 C -0.17 -2.85 9.18 30.59 0.28 -2.57 16 23 C -0.16 -2.98 10.25 30.59 0.31 -2.67 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.46 7.67 -2.38 -0.02 1.45 16 27 H 0.24 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 29 H 0.12 2.52 6.89 -2.39 -0.02 2.50 16 30 H 0.14 3.00 6.84 -2.38 -0.02 2.98 16 31 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 32 H -0.01 -0.53 7.42 -2.38 -0.02 -0.55 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 35 H 0.10 2.20 6.17 -2.39 -0.01 2.18 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.12 1.49 7.87 -2.39 -0.02 1.48 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -83.05 340.32 5.11 -77.93 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.02 Total: 15.80 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 7.81 Total: 8.35 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -5.69 Total: -117.19 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -83.05 5.11 -77.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548191005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.646 kcal (2) G-P(sol) polarization free energy of solvation -83.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds