Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35039 * 126.39747 * 2 1 4 4 N 1.30494 * 108.69848 * 180.02562 * 3 2 1 5 5 C 1.34125 * 109.25923 * 359.97438 * 4 3 2 6 6 C 1.34665 * 108.01705 * 359.73202 * 5 4 3 7 7 C 1.50704 * 126.59016 * 180.27851 * 6 5 4 8 8 C 1.50693 * 109.46896 * 85.17090 * 7 6 5 9 9 O 1.21297 * 120.00442 * 353.76036 * 8 7 6 10 10 N 1.34781 * 120.00168 * 173.75633 * 8 7 6 11 11 C 1.37097 * 119.99613 * 5.47598 * 10 8 7 12 12 H 1.08006 * 119.99895 * 227.21325 * 11 10 8 13 13 C 1.38952 * 120.00291 * 47.21231 * 11 10 8 14 14 N 1.31409 * 120.00285 * 203.29516 * 13 11 10 15 15 Si 1.86798 * 119.99726 * 23.29991 * 13 11 10 16 16 H 1.48498 * 109.47372 * 89.43875 * 15 13 11 17 17 H 1.48503 * 109.47112 * 209.43565 * 15 13 11 18 18 H 1.48502 * 109.47259 * 329.43323 * 15 13 11 19 19 C 1.46500 * 120.00212 * 185.47051 * 10 8 7 20 20 C 1.54271 * 110.03086 * 240.40403 * 19 10 8 21 21 C 1.54965 * 104.15525 * 217.13752 * 20 19 10 22 22 C 1.54887 * 102.77932 * 37.89167 * 21 20 19 23 23 C 1.53873 * 110.02767 * 123.18892 * 19 10 8 24 24 H 1.09003 * 109.46900 * 90.02215 * 1 2 3 25 25 H 1.08996 * 109.46707 * 330.02525 * 1 2 3 26 26 H 1.09000 * 109.46894 * 210.02018 * 1 2 3 27 27 H 1.08004 * 125.64985 * 359.96325 * 3 2 1 28 28 H 1.07998 * 125.99038 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47366 * 205.17089 * 7 6 5 30 30 H 1.08995 * 109.47262 * 325.17012 * 7 6 5 31 31 H 0.97001 * 120.00040 * 180.02562 * 14 13 11 32 32 H 1.08997 * 110.01991 * 1.79834 * 19 10 8 33 33 H 1.08993 * 110.48884 * 335.78132 * 20 19 10 34 34 H 1.09002 * 110.48426 * 98.43150 * 20 19 10 35 35 H 1.08998 * 110.72050 * 279.57320 * 21 20 19 36 36 H 1.09001 * 110.92285 * 156.30161 * 21 20 19 37 37 H 1.09002 * 110.48546 * 203.40344 * 22 21 20 38 38 H 1.08998 * 110.60032 * 80.82038 * 22 21 20 39 39 H 1.09003 * 110.02904 * 238.56925 * 23 19 10 40 40 H 1.08995 * 110.03549 * 359.95193 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5461 -0.6505 -0.0004 6 6 2.2773 -1.1018 0.0063 7 6 1.8364 -2.5428 0.0149 8 6 1.8088 -3.0512 1.4332 9 8 2.2238 -2.3546 2.3354 10 7 1.3230 -4.2799 1.6994 11 6 0.9585 -5.1104 0.6713 12 1 0.0113 -5.6283 0.7054 13 6 1.8076 -5.2858 -0.4145 14 7 1.3227 -5.6776 -1.5713 15 14 3.6385 -4.9649 -0.2298 16 1 4.3187 -6.2123 0.2021 17 1 4.1974 -4.5220 -1.5324 18 1 3.8552 -3.9051 0.7877 19 6 1.1846 -4.7281 3.0873 20 6 2.0448 -5.9866 3.3245 21 6 1.1913 -6.8535 4.2844 22 6 -0.2496 -6.6219 3.7655 23 6 -0.2735 -5.1316 3.3679 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3632 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5142 27 1 1.9335 2.1144 -0.0006 28 1 4.4369 -1.2611 -0.0011 29 1 0.8392 -2.6203 -0.4183 30 1 2.5346 -3.1399 -0.5716 31 1 1.9155 -5.8004 -2.3292 32 1 1.4898 -3.9335 3.7682 33 1 2.2168 -6.5135 2.3860 34 1 2.9923 -5.7185 3.7919 35 1 1.2926 -6.5047 5.3121 36 1 1.4655 -7.9056 4.2064 37 1 -0.9754 -6.8179 4.5548 38 1 -0.4509 -7.2514 2.8987 39 1 -0.6757 -4.5334 4.1855 40 1 -0.8783 -4.9932 2.4717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548585852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = 34.961216 kcal Electronic energy + Delta-G solvation = -22694.315792 eV Core-core repulsion = 19510.506234 eV Total energy + Delta-G solvation = -3183.809558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65132 -39.28357 -36.91746 -34.24781 -33.63958 -32.00610 -31.37703 -28.14408 -27.74726 -26.67075 -26.05014 -24.55186 -21.04749 -20.74921 -20.16249 -19.39173 -19.09842 -17.11748 -16.64419 -15.86485 -15.74413 -15.21818 -14.84763 -14.27160 -14.10298 -13.68386 -13.57121 -13.32667 -12.96772 -12.66004 -12.61632 -12.54495 -12.26875 -12.17891 -11.55587 -11.09616 -11.02157 -10.85149 -10.62475 -10.55329 -10.45396 -10.13297 -10.02896 -9.82692 -9.54577 -9.18446 -9.08471 -8.71007 -7.81905 -7.66765 -6.60962 -4.26156 2.47407 3.00657 3.16773 3.20004 3.27926 3.61973 3.70195 4.03185 4.41315 4.77434 4.95611 5.03844 5.18398 5.21223 5.22814 5.32009 5.44221 5.57930 5.71119 5.92558 5.94203 5.99300 6.11730 6.13080 6.16503 6.23414 6.26122 6.34352 6.36964 6.39612 6.54022 6.77132 6.83311 6.89052 6.99317 7.20511 7.57004 7.62356 7.70875 8.40614 8.49218 8.88154 9.23185 9.66867 10.48510 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.007170 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.426897 B = 3904.179666 C = 4469.182034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.456 5.456 3 C 0.165 3.835 4 N -0.496 5.496 5 C -0.025 4.025 6 C 0.018 3.982 7 C -0.050 4.050 8 C 0.493 3.507 9 O -0.585 6.585 10 N -0.465 5.465 11 C -0.344 4.344 12 H 0.102 0.898 13 C 0.075 3.925 14 N -0.850 5.850 15 Si 0.841 3.159 16 H -0.276 1.276 17 H -0.275 1.275 18 H -0.250 1.250 19 C 0.131 3.869 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.200 0.800 28 H 0.160 0.840 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.277 0.723 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 3.557 3.511 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.140 5.140 3 C -0.116 4.116 4 N -0.214 5.214 5 C -0.172 4.172 6 C -0.097 4.097 7 C -0.091 4.091 8 C 0.282 3.718 9 O -0.469 6.469 10 N -0.187 5.187 11 C -0.470 4.470 12 H 0.119 0.881 13 C -0.133 4.133 14 N -0.484 5.484 15 Si 0.665 3.335 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.175 1.175 19 C 0.027 3.973 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.164 4.164 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.217 0.783 28 H 0.178 0.822 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.415 4.364 3.752 6.692 hybrid contribution 0.276 -0.669 -0.179 0.746 sum -3.139 3.694 3.573 6.023 Atomic orbital electron populations 1.22000 0.77039 1.04666 1.03292 1.45161 1.07380 1.06679 1.54771 1.24691 0.85858 0.93088 1.07980 1.70159 1.19492 1.12036 1.19737 1.21837 0.95748 0.90820 1.08795 1.20903 0.91114 0.89203 1.08529 1.20074 1.04144 0.87885 0.96969 1.20182 0.80259 0.81552 0.89774 1.90569 1.50901 1.57880 1.47502 1.43811 1.58472 1.11426 1.04963 1.18839 1.04530 1.27371 0.96309 0.88064 1.25567 0.97981 0.94756 0.94987 1.69746 1.36126 1.42491 1.00086 0.87458 0.86755 0.79969 0.79271 1.20222 1.20070 1.17452 1.21643 0.94114 0.95921 0.85573 1.22692 0.97512 0.96569 1.00185 1.22415 0.95687 0.99289 0.98415 1.22265 0.96214 0.96878 1.00120 1.22383 0.97413 0.95558 1.01077 0.90603 0.89759 0.89467 0.78326 0.82235 0.87949 0.88797 0.91241 0.89967 0.89759 0.92728 0.92288 0.92123 0.92751 0.91335 0.92813 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.83 59.85 0.65 1.56 16 2 N -0.46 -7.84 3.15 -121.36 -0.38 -8.23 16 3 C 0.17 2.73 12.56 -90.38 -1.14 1.60 16 4 N -0.50 -9.93 11.25 -14.67 -0.17 -10.10 16 5 C -0.02 -0.53 11.79 -17.82 -0.21 -0.74 16 6 C 0.02 0.37 5.45 -81.60 -0.45 -0.08 16 7 C -0.05 -1.09 3.87 -29.04 -0.11 -1.21 16 8 C 0.49 11.68 5.20 -10.99 -0.06 11.62 16 9 O -0.58 -15.17 15.42 5.54 0.09 -15.09 16 10 N -0.47 -10.58 1.99 -106.54 -0.21 -10.79 16 11 C -0.34 -8.23 7.52 -14.93 -0.11 -8.34 16 12 H 0.10 2.56 7.20 -52.48 -0.38 2.18 16 13 C 0.08 1.86 4.21 -17.47 -0.07 1.79 16 14 N -0.85 -21.81 13.96 55.50 0.77 -21.03 16 15 Si 0.84 19.68 24.59 -169.99 -4.18 15.51 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.25 -6.13 5.46 56.52 0.31 -5.82 16 19 C 0.13 2.65 3.29 -66.81 -0.22 2.43 16 20 C -0.13 -2.45 6.42 -25.03 -0.16 -2.61 16 21 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 22 C -0.12 -1.78 6.83 -25.07 -0.17 -1.95 16 23 C -0.13 -2.18 6.21 -25.61 -0.16 -2.34 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.20 7.67 -51.93 -0.40 0.80 16 27 H 0.20 2.29 8.06 -52.48 -0.42 1.87 16 28 H 0.16 3.31 8.06 -52.49 -0.42 2.89 16 29 H 0.10 2.15 7.49 -51.93 -0.39 1.76 16 30 H 0.09 2.15 3.16 -51.93 -0.16 1.99 16 31 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 33 H 0.08 1.75 7.14 -51.93 -0.37 1.38 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.42 6.78 -51.93 -0.35 1.07 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -30.29 317.07 -7.55 -37.83 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.87 Total: 7.36 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.38 Total: -0.24 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.01 Total: -50.15 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.18 Total: 15.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.29 -7.55 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548585852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.795 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds