Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35039 * 126.39747 * 2 1 4 4 N 1.30494 * 108.69848 * 180.02562 * 3 2 1 5 5 C 1.34125 * 109.25923 * 359.97438 * 4 3 2 6 6 C 1.34665 * 108.01705 * 359.73202 * 5 4 3 7 7 C 1.50704 * 126.59016 * 180.27851 * 6 5 4 8 8 C 1.50693 * 109.46896 * 85.17090 * 7 6 5 9 9 O 1.21297 * 120.00442 * 353.76036 * 8 7 6 10 10 N 1.34781 * 120.00168 * 173.75633 * 8 7 6 11 11 C 1.37097 * 119.99613 * 5.47598 * 10 8 7 12 12 H 1.08006 * 119.99895 * 227.21325 * 11 10 8 13 13 C 1.38952 * 120.00291 * 47.21231 * 11 10 8 14 14 N 1.31409 * 120.00285 * 203.29516 * 13 11 10 15 15 Si 1.86798 * 119.99726 * 23.29991 * 13 11 10 16 16 H 1.48498 * 109.47372 * 89.43875 * 15 13 11 17 17 H 1.48503 * 109.47112 * 209.43565 * 15 13 11 18 18 H 1.48502 * 109.47259 * 329.43323 * 15 13 11 19 19 C 1.46500 * 120.00212 * 185.47051 * 10 8 7 20 20 C 1.54271 * 110.03086 * 240.40403 * 19 10 8 21 21 C 1.54965 * 104.15525 * 217.13752 * 20 19 10 22 22 C 1.54887 * 102.77932 * 37.89167 * 21 20 19 23 23 C 1.53873 * 110.02767 * 123.18892 * 19 10 8 24 24 H 1.09003 * 109.46900 * 90.02215 * 1 2 3 25 25 H 1.08996 * 109.46707 * 330.02525 * 1 2 3 26 26 H 1.09000 * 109.46894 * 210.02018 * 1 2 3 27 27 H 1.08004 * 125.64985 * 359.96325 * 3 2 1 28 28 H 1.07998 * 125.99038 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47366 * 205.17089 * 7 6 5 30 30 H 1.08995 * 109.47262 * 325.17012 * 7 6 5 31 31 H 0.97001 * 120.00040 * 180.02562 * 14 13 11 32 32 H 1.08997 * 110.01991 * 1.79834 * 19 10 8 33 33 H 1.08993 * 110.48884 * 335.78132 * 20 19 10 34 34 H 1.09002 * 110.48426 * 98.43150 * 20 19 10 35 35 H 1.08998 * 110.72050 * 279.57320 * 21 20 19 36 36 H 1.09001 * 110.92285 * 156.30161 * 21 20 19 37 37 H 1.09002 * 110.48546 * 203.40344 * 22 21 20 38 38 H 1.08998 * 110.60032 * 80.82038 * 22 21 20 39 39 H 1.09003 * 110.02904 * 238.56925 * 23 19 10 40 40 H 1.08995 * 110.03549 * 359.95193 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5461 -0.6505 -0.0004 6 6 2.2773 -1.1018 0.0063 7 6 1.8364 -2.5428 0.0149 8 6 1.8088 -3.0512 1.4332 9 8 2.2238 -2.3546 2.3354 10 7 1.3230 -4.2799 1.6994 11 6 0.9585 -5.1104 0.6713 12 1 0.0113 -5.6283 0.7054 13 6 1.8076 -5.2858 -0.4145 14 7 1.3227 -5.6776 -1.5713 15 14 3.6385 -4.9649 -0.2298 16 1 4.3187 -6.2123 0.2021 17 1 4.1974 -4.5220 -1.5324 18 1 3.8552 -3.9051 0.7877 19 6 1.1846 -4.7281 3.0873 20 6 2.0448 -5.9866 3.3245 21 6 1.1913 -6.8535 4.2844 22 6 -0.2496 -6.6219 3.7655 23 6 -0.2735 -5.1316 3.3679 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3632 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5142 27 1 1.9335 2.1144 -0.0006 28 1 4.4369 -1.2611 -0.0011 29 1 0.8392 -2.6203 -0.4183 30 1 2.5346 -3.1399 -0.5716 31 1 1.9155 -5.8004 -2.3292 32 1 1.4898 -3.9335 3.7682 33 1 2.2168 -6.5135 2.3860 34 1 2.9923 -5.7185 3.7919 35 1 1.2926 -6.5047 5.3121 36 1 1.4655 -7.9056 4.2064 37 1 -0.9754 -6.8179 4.5548 38 1 -0.4509 -7.2514 2.8987 39 1 -0.6757 -4.5334 4.1855 40 1 -0.8783 -4.9932 2.4717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548585852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 17.871686 kcal Electronic energy + Delta-G solvation = -22695.056850 eV Core-core repulsion = 19510.506234 eV Total energy + Delta-G solvation = -3184.550616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.08350 -41.04397 -38.50115 -36.09213 -34.95616 -33.82404 -33.05265 -29.53551 -29.26335 -27.85011 -27.64991 -26.38850 -22.58437 -22.25604 -21.45810 -21.10552 -20.64333 -18.94251 -18.04920 -17.62168 -17.41435 -16.65574 -16.30263 -15.86748 -15.79366 -15.25979 -15.18105 -14.95662 -14.53374 -14.24774 -14.05030 -13.94705 -13.72182 -13.47742 -13.20623 -12.88122 -12.62411 -12.55394 -12.28417 -11.95157 -11.87806 -11.85647 -11.47492 -11.38359 -11.09350 -10.94506 -10.68910 -10.42591 -9.52770 -9.35180 -8.58893 -6.22389 1.01499 1.11240 1.24073 1.33953 1.81008 1.91720 2.09134 2.13953 2.67959 2.86852 3.66172 3.78692 3.84042 3.85351 3.93558 4.10822 4.12623 4.23480 4.41169 4.42148 4.49585 4.58328 4.66206 4.68508 4.72592 4.74538 4.84985 4.89702 5.00987 5.12439 5.23233 5.33873 5.35189 5.44112 5.56717 5.63470 5.69451 5.87821 6.34833 6.45239 6.93750 7.05528 7.33713 7.79201 8.54029 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.007170 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.426897 B = 3904.179666 C = 4469.182034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.457 5.457 3 C 0.189 3.811 4 N -0.530 5.530 5 C -0.048 4.048 6 C -0.006 4.006 7 C -0.040 4.040 8 C 0.487 3.513 9 O -0.611 6.611 10 N -0.467 5.467 11 C -0.330 4.330 12 H 0.090 0.910 13 C 0.059 3.941 14 N -0.873 5.873 15 Si 0.876 3.124 16 H -0.278 1.278 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.120 3.880 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.120 4.120 24 H 0.098 0.902 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.254 0.746 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.281 0.719 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 4.260 4.404 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.139 5.139 3 C -0.093 4.093 4 N -0.249 5.249 5 C -0.195 4.195 6 C -0.122 4.122 7 C -0.080 4.080 8 C 0.277 3.723 9 O -0.497 6.497 10 N -0.188 5.188 11 C -0.458 4.458 12 H 0.107 0.893 13 C -0.147 4.147 14 N -0.509 5.509 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.195 1.195 18 H -0.196 1.196 19 C 0.017 3.983 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.159 4.159 24 H 0.117 0.883 25 H 0.142 0.858 26 H 0.088 0.912 27 H 0.270 0.730 28 H 0.166 0.834 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.835 5.035 4.641 8.383 hybrid contribution 0.661 -0.803 -0.419 1.121 sum -4.174 4.232 4.222 7.291 Atomic orbital electron populations 1.22349 0.74252 1.05771 1.05167 1.45421 1.09072 1.05639 1.53793 1.25742 0.84754 0.94773 1.04071 1.70134 1.21773 1.11160 1.21795 1.21868 0.95904 0.91851 1.09910 1.20703 0.91695 0.89529 1.10303 1.19864 1.03788 0.88882 0.95512 1.20518 0.79878 0.81584 0.90309 1.90534 1.52134 1.58600 1.48444 1.43928 1.57833 1.11068 1.05944 1.18667 1.03893 1.26644 0.96563 0.89270 1.25747 0.99134 0.94904 0.94929 1.69764 1.36806 1.43807 1.00535 0.86934 0.85270 0.78826 0.78742 1.20442 1.19490 1.19599 1.21912 0.96592 0.96157 0.83669 1.22680 0.98079 0.96329 1.00118 1.22405 0.94434 0.99509 0.98388 1.22246 0.97174 0.94723 1.00724 1.22337 0.94847 0.97655 1.01033 0.88346 0.85844 0.91198 0.73025 0.83430 0.87668 0.90229 0.90824 0.91318 0.92235 0.92879 0.90140 0.90482 0.89525 0.92450 0.90874 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 10.83 127.77 1.38 2.85 16 2 N -0.46 -14.90 3.15 -537.87 -1.70 -16.60 16 3 C 0.19 5.74 12.56 180.27 2.26 8.01 16 4 N -0.53 -20.84 11.25 -200.32 -2.25 -23.09 16 5 C -0.05 -2.10 11.79 83.52 0.98 -1.12 16 6 C -0.01 -0.25 5.45 40.95 0.22 -0.03 16 7 C -0.04 -1.77 3.87 29.10 0.11 -1.66 16 8 C 0.49 23.55 5.20 87.65 0.46 24.01 16 9 O -0.61 -32.39 15.42 -3.08 -0.05 -32.44 16 10 N -0.47 -21.57 1.99 -609.37 -1.21 -22.78 16 11 C -0.33 -16.05 7.52 84.04 0.63 -15.42 16 12 H 0.09 4.57 7.20 -2.91 -0.02 4.55 16 13 C 0.06 2.97 4.21 84.93 0.36 3.32 16 14 N -0.87 -45.07 13.96 21.66 0.30 -44.77 16 15 Si 0.88 41.57 24.59 68.60 1.69 43.26 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.27 -13.71 5.46 99.48 0.54 -13.16 16 19 C 0.12 4.83 3.29 45.72 0.15 4.98 16 20 C -0.13 -4.93 6.42 31.70 0.20 -4.72 16 21 C -0.11 -3.02 6.91 31.91 0.22 -2.80 16 22 C -0.11 -3.09 6.83 31.67 0.22 -2.88 16 23 C -0.12 -4.01 6.21 31.32 0.19 -3.81 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 27 H 0.25 4.55 8.06 -2.91 -0.02 4.52 16 28 H 0.15 6.49 8.06 -2.91 -0.02 6.46 16 29 H 0.11 4.50 7.49 -2.39 -0.02 4.48 16 30 H 0.08 3.75 3.16 -2.39 -0.01 3.74 16 31 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 32 H 0.07 2.94 6.96 -2.39 -0.02 2.93 16 33 H 0.06 2.48 7.14 -2.39 -0.02 2.47 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.16 6.78 -2.39 -0.02 2.15 16 Total: -1.00 -67.02 317.07 5.05 -61.98 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.87 Total: 23.72 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 7.40 Total: 10.73 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.86 Total: -107.24 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.05 Total: -32.44 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.69 Total: 43.26 kcal Total: -67.02 5.05 -61.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548585852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.847 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds