Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99826 * 2 1 4 4 C 1.34774 * 120.00327 * 179.97438 * 2 1 3 5 5 O 1.21589 * 119.99931 * 359.97438 * 4 2 1 6 6 N 1.34778 * 120.00259 * 180.02562 * 4 2 1 7 7 C 1.39949 * 120.00071 * 184.63039 * 6 4 2 8 8 C 1.38867 * 120.06861 * 324.90780 * 7 6 4 9 9 C 1.38112 * 119.92725 * 180.02562 * 8 7 6 10 10 C 1.38276 * 120.06997 * 0.02562 * 9 8 7 11 11 C 1.50708 * 119.93020 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.46823 * 89.99858 * 11 10 9 13 13 C 1.46904 * 110.99678 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47185 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00509 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00427 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99609 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46937 * 89.99804 * 18 16 14 20 20 H 1.48494 * 109.46979 * 209.99826 * 18 16 14 21 21 H 1.48498 * 109.46941 * 330.00206 * 18 16 14 22 22 C 1.38285 * 120.14287 * 0.23216 * 10 9 8 23 23 C 1.38119 * 120.06591 * 359.49481 * 22 10 9 24 24 H 1.08996 * 109.47600 * 270.00278 * 1 2 3 25 25 H 1.09000 * 109.47257 * 30.00411 * 1 2 3 26 26 H 1.09005 * 109.46683 * 149.99879 * 1 2 3 27 27 H 1.08996 * 109.47558 * 239.99517 * 3 2 1 28 28 H 1.09006 * 109.47257 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47161 * 119.99393 * 3 2 1 30 30 H 0.96996 * 119.99737 * 4.62568 * 6 4 2 31 31 H 1.07996 * 120.03472 * 359.97438 * 8 7 6 32 32 H 1.07996 * 119.96011 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.46893 * 330.00127 * 11 10 9 34 34 H 1.08996 * 109.46883 * 209.99883 * 11 10 9 35 35 H 1.00898 * 110.99969 * 56.05102 * 12 11 10 36 36 H 1.09000 * 109.46836 * 300.00171 * 13 12 11 37 37 H 1.09002 * 109.47020 * 59.99972 * 13 12 11 38 38 H 0.97002 * 120.00057 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.96519 * 179.72415 * 22 10 9 40 40 H 1.07998 * 120.03365 * 180.24400 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5310 -2.2202 0.0015 6 7 3.4867 -1.1671 0.0010 7 6 4.1865 -2.3752 -0.0963 8 6 3.6826 -3.5215 0.5041 9 6 4.3759 -4.7120 0.4067 10 6 5.5709 -4.7631 -0.2873 11 6 6.3251 -6.0638 -0.3911 12 7 5.8819 -6.7926 -1.5871 13 6 6.5970 -8.0689 -1.7208 14 6 6.1174 -8.7863 -2.9563 15 1 5.3572 -8.3391 -3.5796 16 6 6.6491 -10.0135 -3.2910 17 7 6.2310 -10.6393 -4.3695 18 14 7.9635 -10.7874 -2.2125 19 1 7.3184 -11.6285 -1.1725 20 1 8.8558 -11.6306 -3.0479 21 1 8.7610 -9.7181 -1.5599 22 6 6.0780 -3.6222 -0.8817 23 6 5.3866 -2.4298 -0.7927 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8242 1.3265 -0.8899 28 1 1.4891 2.0973 -0.0005 29 1 2.8241 1.3266 0.8901 30 1 3.9716 -0.3298 0.0688 31 1 2.7500 -3.4819 1.0473 32 1 3.9843 -5.6039 0.8731 33 1 6.1311 -6.6679 0.4952 34 1 7.3932 -5.8594 -0.4650 35 1 5.9916 -6.2278 -2.4160 36 1 7.6670 -7.8788 -1.8037 37 1 6.4045 -8.6867 -0.8437 38 1 6.6048 -11.5029 -4.6047 39 1 7.0138 -3.6644 -1.4192 40 1 5.7812 -1.5400 -1.2605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565593923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = 11.801536 kcal Electronic energy + Delta-G solvation = -20442.523084 eV Core-core repulsion = 17257.709246 eV Total energy + Delta-G solvation = -3184.813838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88424 -38.94246 -36.15274 -35.61598 -34.47030 -32.37914 -30.77243 -30.27221 -28.43453 -27.35884 -26.10435 -23.95207 -22.81332 -21.25970 -21.00475 -20.14882 -18.59832 -17.50032 -16.84445 -16.35103 -15.84763 -15.48864 -15.04394 -14.41175 -14.34803 -14.11846 -13.70358 -13.66652 -13.57183 -13.25566 -13.13606 -12.98160 -12.58506 -12.36222 -12.32557 -11.96462 -11.66938 -11.29847 -10.91307 -10.60918 -10.58665 -10.28481 -10.01027 -9.80694 -9.25830 -9.11185 -8.72753 -8.55574 -7.95883 -7.40059 -6.02095 -4.00030 1.42354 1.60562 2.26676 2.88627 3.31689 3.38415 3.40721 3.54379 3.96160 4.45063 4.50514 4.77421 4.86012 4.97807 5.09680 5.10876 5.19219 5.21580 5.30167 5.42926 5.45523 5.56406 5.61587 5.65283 5.90259 6.03644 6.10870 6.21741 6.32071 6.43966 6.61218 6.66805 6.78371 6.95399 7.05158 7.19948 7.52109 7.63576 7.92650 8.24458 8.37292 8.69047 9.06794 9.59562 11.11259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.002823 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.366888 B = 9914.832199 C =10225.596751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.637 5.637 3 C 0.075 3.925 4 C 0.702 3.298 5 O -0.566 6.566 6 N -0.683 5.683 7 C 0.147 3.853 8 C -0.119 4.119 9 C -0.080 4.080 10 C -0.081 4.081 11 C 0.093 3.907 12 N -0.675 5.675 13 C 0.163 3.837 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.098 4.098 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.403 0.597 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.337 0.663 36 H -0.016 1.016 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 27.191 11.645 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.376 5.376 3 C -0.068 4.068 4 C 0.404 3.596 5 O -0.442 6.442 6 N -0.331 5.331 7 C 0.053 3.947 8 C -0.139 4.139 9 C -0.099 4.099 10 C -0.083 4.083 11 C -0.036 4.036 12 N -0.305 5.305 13 C 0.036 3.964 14 C -0.553 4.553 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.117 4.117 23 C -0.167 4.167 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.239 0.761 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.154 0.846 36 H 0.002 0.998 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.152 26.004 11.841 29.228 hybrid contribution 1.787 0.376 0.137 1.831 sum -4.366 26.380 11.978 29.299 Atomic orbital electron populations 1.21586 0.77310 1.03337 1.01831 1.46925 1.07291 1.04686 1.78672 1.21795 0.97714 0.85815 1.01514 1.15871 0.81559 0.84088 0.78087 1.90966 1.67383 1.29507 1.56322 1.42586 1.04848 1.08715 1.76960 1.17455 0.92999 0.85544 0.98699 1.21250 1.00782 0.91817 1.00050 1.20979 0.93648 0.97221 0.98095 1.19980 0.95711 0.94921 0.97652 1.20906 0.95047 0.91190 0.96460 1.60521 1.60196 1.06035 1.03770 1.20026 0.91207 0.87342 0.97850 1.21069 1.23017 1.03542 1.07706 0.90266 1.24913 0.96581 0.96841 0.95064 1.69904 1.43384 1.15544 1.25149 0.86812 0.82241 0.79601 0.80784 1.20130 1.21247 1.19252 1.20825 0.99865 0.91729 0.99255 1.20725 0.96110 0.98758 1.01091 0.92856 0.91167 0.90180 0.92109 0.89828 0.92223 0.76076 0.84549 0.85522 0.90861 0.95404 0.84581 0.99810 0.95925 0.92669 0.85898 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 10.41 59.85 0.62 1.34 16 2 N -0.64 -5.33 3.27 -195.33 -0.64 -5.97 16 3 C 0.08 0.30 9.48 59.85 0.57 0.87 16 4 C 0.70 8.58 8.13 -86.92 -0.71 7.87 16 5 O -0.57 -9.33 13.36 5.29 0.07 -9.26 16 6 N -0.68 -7.17 5.24 -14.22 -0.07 -7.24 16 7 C 0.15 1.94 6.30 -83.69 -0.53 1.41 16 8 C -0.12 -1.79 8.70 -39.39 -0.34 -2.13 16 9 C -0.08 -1.25 9.69 -39.61 -0.38 -1.63 16 10 C -0.08 -1.28 5.39 -104.59 -0.56 -1.84 16 11 C 0.09 1.63 5.81 -4.97 -0.03 1.60 16 12 N -0.67 -14.63 6.48 -116.33 -0.75 -15.38 16 13 C 0.16 4.08 4.51 -4.97 -0.02 4.06 16 14 C -0.52 -15.17 9.87 -34.44 -0.34 -15.51 16 15 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C -0.10 -1.33 9.69 -39.61 -0.38 -1.72 16 23 C -0.15 -1.78 9.97 -39.39 -0.39 -2.17 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.29 7.92 -51.93 -0.41 -0.12 16 26 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 27 H 0.06 0.21 8.02 -51.93 -0.42 -0.21 16 28 H 0.08 0.18 7.79 -51.93 -0.40 -0.22 16 29 H 0.06 0.18 7.90 -51.93 -0.41 -0.23 16 30 H 0.40 2.76 7.18 -40.82 -0.29 2.47 16 31 H 0.14 2.16 6.22 -52.49 -0.33 1.83 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.34 7.16 8.72 -39.29 -0.34 6.82 16 36 H -0.02 -0.39 7.20 -51.93 -0.37 -0.76 16 37 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -35.70 334.73 -8.73 -44.42 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.88 Total: 4.54 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.60 Total: -5.94 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.69 Total: -56.08 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.70 -8.73 -44.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565593923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.224 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds