Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99826 * 2 1 4 4 C 1.34774 * 120.00327 * 179.97438 * 2 1 3 5 5 O 1.21589 * 119.99931 * 359.97438 * 4 2 1 6 6 N 1.34778 * 120.00259 * 180.02562 * 4 2 1 7 7 C 1.39949 * 120.00071 * 184.63039 * 6 4 2 8 8 C 1.38867 * 120.06861 * 324.90780 * 7 6 4 9 9 C 1.38112 * 119.92725 * 180.02562 * 8 7 6 10 10 C 1.38276 * 120.06997 * 0.02562 * 9 8 7 11 11 C 1.50708 * 119.93020 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.46823 * 89.99858 * 11 10 9 13 13 C 1.46904 * 110.99678 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47185 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00509 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00427 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99609 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46937 * 89.99804 * 18 16 14 20 20 H 1.48494 * 109.46979 * 209.99826 * 18 16 14 21 21 H 1.48498 * 109.46941 * 330.00206 * 18 16 14 22 22 C 1.38285 * 120.14287 * 0.23216 * 10 9 8 23 23 C 1.38119 * 120.06591 * 359.49481 * 22 10 9 24 24 H 1.08996 * 109.47600 * 270.00278 * 1 2 3 25 25 H 1.09000 * 109.47257 * 30.00411 * 1 2 3 26 26 H 1.09005 * 109.46683 * 149.99879 * 1 2 3 27 27 H 1.08996 * 109.47558 * 239.99517 * 3 2 1 28 28 H 1.09006 * 109.47257 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47161 * 119.99393 * 3 2 1 30 30 H 0.96996 * 119.99737 * 4.62568 * 6 4 2 31 31 H 1.07996 * 120.03472 * 359.97438 * 8 7 6 32 32 H 1.07996 * 119.96011 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.46893 * 330.00127 * 11 10 9 34 34 H 1.08996 * 109.46883 * 209.99883 * 11 10 9 35 35 H 1.00898 * 110.99969 * 56.05102 * 12 11 10 36 36 H 1.09000 * 109.46836 * 300.00171 * 13 12 11 37 37 H 1.09002 * 109.47020 * 59.99972 * 13 12 11 38 38 H 0.97002 * 120.00057 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.96519 * 179.72415 * 22 10 9 40 40 H 1.07998 * 120.03365 * 180.24400 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5310 -2.2202 0.0015 6 7 3.4867 -1.1671 0.0010 7 6 4.1865 -2.3752 -0.0963 8 6 3.6826 -3.5215 0.5041 9 6 4.3759 -4.7120 0.4067 10 6 5.5709 -4.7631 -0.2873 11 6 6.3251 -6.0638 -0.3911 12 7 5.8819 -6.7926 -1.5871 13 6 6.5970 -8.0689 -1.7208 14 6 6.1174 -8.7863 -2.9563 15 1 5.3572 -8.3391 -3.5796 16 6 6.6491 -10.0135 -3.2910 17 7 6.2310 -10.6393 -4.3695 18 14 7.9635 -10.7874 -2.2125 19 1 7.3184 -11.6285 -1.1725 20 1 8.8558 -11.6306 -3.0479 21 1 8.7610 -9.7181 -1.5599 22 6 6.0780 -3.6222 -0.8817 23 6 5.3866 -2.4298 -0.7927 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8242 1.3265 -0.8899 28 1 1.4891 2.0973 -0.0005 29 1 2.8241 1.3266 0.8901 30 1 3.9716 -0.3298 0.0688 31 1 2.7500 -3.4819 1.0473 32 1 3.9843 -5.6039 0.8731 33 1 6.1311 -6.6679 0.4952 34 1 7.3932 -5.8594 -0.4650 35 1 5.9916 -6.2278 -2.4160 36 1 7.6670 -7.8788 -1.8037 37 1 6.4045 -8.6867 -0.8437 38 1 6.6048 -11.5029 -4.6047 39 1 7.0138 -3.6644 -1.4192 40 1 5.7812 -1.5400 -1.2605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565593923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -14.514509 kcal Electronic energy + Delta-G solvation = -20443.664233 eV Core-core repulsion = 17257.709246 eV Total energy + Delta-G solvation = -3185.954987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79849 -39.99551 -37.38520 -36.59952 -35.78453 -34.44829 -31.85798 -31.65755 -29.28698 -28.63795 -27.03783 -25.30031 -23.90952 -23.08588 -22.27294 -21.08206 -19.40461 -19.01426 -18.38958 -17.16592 -17.13320 -16.59642 -16.24161 -15.99959 -15.63129 -15.41289 -15.06409 -14.75205 -14.55915 -14.50794 -14.23349 -13.70424 -13.58798 -13.49932 -13.46822 -13.19859 -12.95655 -12.78320 -12.47289 -12.24500 -11.96354 -11.84166 -11.54042 -11.37185 -11.06160 -10.80951 -9.82328 -9.79422 -9.18306 -8.91571 -8.29937 -6.35147 0.31802 0.51513 1.35933 1.37967 1.49120 1.51293 1.96299 2.34741 2.84438 2.87370 3.03928 3.70594 3.93485 4.02144 4.11965 4.18505 4.35696 4.40647 4.48103 4.52170 4.60254 4.72764 4.73813 4.77150 4.84490 4.87394 4.93136 5.07048 5.13771 5.28306 5.32490 5.48551 5.51221 5.56526 5.78818 5.83230 5.94050 6.12009 6.55949 6.64849 6.75838 6.76922 7.29822 7.38500 8.87082 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.002823 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.366888 B = 9914.832199 C =10225.596751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.066 3.934 4 C 0.691 3.309 5 O -0.619 6.619 6 N -0.669 5.669 7 C 0.149 3.851 8 C -0.135 4.135 9 C -0.094 4.094 10 C -0.099 4.099 11 C 0.098 3.902 12 N -0.688 5.688 13 C 0.175 3.825 14 C -0.530 4.530 15 H 0.033 0.967 16 C 0.005 3.995 17 N -0.949 5.949 18 Si 0.956 3.044 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.247 1.247 22 C -0.096 4.096 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.423 0.577 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.337 0.663 36 H -0.007 1.007 37 H 0.025 0.975 38 H 0.268 0.732 39 H 0.142 0.858 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 29.837 12.777 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.369 5.369 3 C -0.075 4.075 4 C 0.393 3.607 5 O -0.499 6.499 6 N -0.319 5.319 7 C 0.054 3.946 8 C -0.156 4.156 9 C -0.113 4.113 10 C -0.101 4.101 11 C -0.031 4.031 12 N -0.319 5.319 13 C 0.046 3.954 14 C -0.569 4.569 15 H 0.051 0.949 16 C -0.192 4.192 17 N -0.590 5.590 18 Si 0.778 3.222 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.170 1.170 22 C -0.115 4.115 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.263 0.737 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.154 0.846 36 H 0.011 0.989 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.353 28.753 12.990 31.850 hybrid contribution 1.087 -0.283 -0.258 1.153 sum -3.266 28.469 12.732 31.357 Atomic orbital electron populations 1.21716 0.76748 1.03643 1.02342 1.47087 1.07870 1.04953 1.77017 1.22125 0.98463 0.84244 1.02716 1.16203 0.81936 0.84550 0.78038 1.90935 1.68456 1.31809 1.58678 1.42401 1.04422 1.08733 1.76342 1.17594 0.93329 0.85875 0.97812 1.21200 1.00509 0.92757 1.01125 1.20979 0.94143 0.97349 0.98809 1.19865 0.95948 0.94938 0.99313 1.20901 0.96156 0.91677 0.94326 1.60406 1.60503 1.05684 1.05329 1.19775 0.91584 0.88552 0.95462 1.21347 1.22200 1.04299 1.09012 0.94882 1.25942 0.99330 0.97337 0.96587 1.70065 1.45269 1.16279 1.27344 0.85592 0.78894 0.78964 0.78706 1.19162 1.20518 1.17020 1.21083 1.00516 0.91461 0.98470 1.21048 0.95054 0.99598 0.99891 0.92288 0.87687 0.92980 0.90993 0.87343 0.90852 0.73713 0.86088 0.86306 0.90840 0.93746 0.84608 0.98939 0.95679 0.92309 0.84021 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.41 127.77 1.33 2.59 16 2 N -0.63 -9.47 3.27 -890.17 -2.91 -12.39 16 3 C 0.07 0.31 9.48 127.77 1.21 1.52 16 4 C 0.69 16.47 8.13 179.05 1.46 17.93 16 5 O -0.62 -21.16 13.36 -4.00 -0.05 -21.21 16 6 N -0.67 -12.85 5.24 -317.17 -1.66 -14.51 16 7 C 0.15 3.74 6.30 38.14 0.24 3.98 16 8 C -0.14 -4.17 8.70 22.39 0.19 -3.98 16 9 C -0.09 -2.99 9.69 22.25 0.22 -2.77 16 10 C -0.10 -3.05 5.39 -19.84 -0.11 -3.16 16 11 C 0.10 3.33 5.81 85.56 0.50 3.82 16 12 N -0.69 -29.87 6.48 -521.96 -3.38 -33.25 16 13 C 0.17 8.63 4.51 85.56 0.39 9.02 16 14 C -0.53 -31.98 9.87 25.60 0.25 -31.73 16 15 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 16 C 0.01 0.32 5.47 84.65 0.46 0.78 16 17 N -0.95 -60.94 13.96 21.44 0.30 -60.64 16 18 Si 0.96 44.88 27.47 68.60 1.88 46.77 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.25 -10.68 6.54 99.48 0.65 -10.02 16 22 C -0.10 -2.42 9.69 22.25 0.22 -2.20 16 23 C -0.14 -2.92 9.97 22.39 0.22 -2.69 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.59 7.92 -2.39 -0.02 0.58 16 26 H 0.05 0.98 7.42 -2.38 -0.02 0.96 16 27 H 0.07 0.22 8.02 -2.39 -0.02 0.20 16 28 H 0.11 0.02 7.79 -2.38 -0.02 0.00 16 29 H 0.07 0.18 7.90 -2.38 -0.02 0.17 16 30 H 0.42 4.46 7.18 -92.71 -0.67 3.80 16 31 H 0.12 4.08 6.22 -2.91 -0.02 4.06 16 32 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 33 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 34 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.34 14.42 8.72 -89.70 -0.78 13.64 16 36 H -0.01 -0.33 7.20 -2.39 -0.02 -0.35 16 37 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -80.85 334.73 0.30 -80.56 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.45 Total: 21.56 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 6.58 Total: -6.88 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -7.66 Total: -120.79 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -80.85 0.30 -80.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565593923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.042 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds