Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48494 * 109.47025 * 269.99643 * 3 2 1 5 5 H 1.48497 * 109.47114 * 29.99923 * 3 2 1 6 6 H 1.48505 * 109.47022 * 149.99659 * 3 2 1 7 7 C 1.37878 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99782 * 182.91263 * 7 2 1 9 9 C 1.50701 * 120.00286 * 2.91702 * 7 2 1 10 10 C 1.53002 * 115.55093 * 88.20117 * 9 7 2 11 11 N 1.46492 * 109.47012 * 41.04928 * 10 9 7 12 12 C 1.34781 * 120.00278 * 186.14196 * 11 10 9 13 13 O 1.21283 * 119.99221 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00545 * 179.72439 * 12 11 10 15 15 H 1.08998 * 115.55365 * 57.26706 * 14 12 11 16 16 C 1.53035 * 117.50814 * 203.01162 * 14 12 11 17 17 C 1.52808 * 59.96503 * 107.47370 * 16 14 12 18 18 C 1.53145 * 117.75117 * 107.63222 * 17 16 14 19 19 C 1.53179 * 108.88948 * 199.61765 * 18 17 16 20 20 C 1.52935 * 109.45385 * 303.44160 * 19 18 17 21 21 C 1.52942 * 109.82469 * 62.97947 * 20 19 18 22 22 C 1.53151 * 117.75193 * 252.37515 * 17 16 14 23 23 C 1.52997 * 117.51838 * 233.90398 * 9 7 2 24 24 C 1.53003 * 117.49719 * 302.53394 * 9 7 2 25 25 H 0.97000 * 120.00285 * 5.03717 * 1 2 3 26 26 H 1.09007 * 109.46939 * 281.04971 * 10 9 7 27 27 H 1.08995 * 109.47081 * 161.05355 * 10 9 7 28 28 H 0.97003 * 120.00441 * 6.13528 * 11 10 9 29 29 H 1.08998 * 117.50519 * 214.95196 * 16 14 12 30 30 H 1.09007 * 117.49954 * 359.97438 * 16 14 12 31 31 H 1.09002 * 109.56973 * 319.44183 * 18 17 16 32 32 H 1.09005 * 109.57105 * 79.79961 * 18 17 16 33 33 H 1.08999 * 109.47603 * 183.44028 * 19 18 17 34 34 H 1.09005 * 109.47027 * 63.43564 * 19 18 17 35 35 H 1.09009 * 109.41205 * 302.86819 * 20 19 18 36 36 H 1.09003 * 109.41421 * 183.09050 * 20 19 18 37 37 H 1.09000 * 109.47462 * 177.02148 * 21 20 19 38 38 H 1.09002 * 109.47648 * 57.00304 * 21 20 19 39 39 H 1.09008 * 109.56484 * 280.19490 * 22 17 16 40 40 H 1.09000 * 109.57153 * 40.42856 * 22 17 16 41 41 H 1.09000 * 117.50091 * 214.96685 * 23 9 7 42 42 H 1.09003 * 117.49752 * 359.97438 * 23 9 7 43 43 H 1.09000 * 117.50004 * 359.97286 * 24 9 7 44 44 H 1.08993 * 117.49985 * 144.97303 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0835 -1.1947 0.0481 9 6 1.2525 -2.4984 -0.0653 10 6 0.9465 -3.0134 -1.4732 11 7 2.1112 -2.7990 -2.3354 12 6 2.0306 -3.0622 -3.6548 13 8 0.9935 -3.4761 -4.1282 14 6 3.2268 -2.8357 -4.5429 15 1 4.1309 -3.3750 -4.2603 16 6 2.9683 -2.6220 -6.0360 17 6 3.3965 -1.4469 -5.1580 18 6 4.8219 -0.9129 -5.3268 19 6 5.2039 -0.1152 -4.0761 20 6 4.1820 1.0001 -3.8514 21 6 2.8028 0.3944 -3.5870 22 6 2.3435 -0.3867 -4.8221 23 6 1.5433 -3.5375 1.0193 24 6 0.2178 -2.7732 1.0278 25 1 -0.4850 0.8368 -0.0738 26 1 0.0900 -2.4748 -1.8789 27 1 0.7183 -4.0782 -1.4289 28 1 2.9405 -2.4674 -1.9568 29 1 3.7023 -3.0208 -6.7361 30 1 1.9329 -2.6455 -6.3760 31 1 5.5119 -1.7473 -5.4525 32 1 4.8675 -0.2641 -6.2015 33 1 6.1938 0.3206 -4.2114 34 1 5.2140 -0.7785 -3.2111 35 1 4.1359 1.6332 -4.7377 36 1 4.4842 1.6011 -2.9937 37 1 2.0902 1.1916 -3.3756 38 1 2.8594 -0.2789 -2.7317 39 1 2.2309 0.2957 -5.6647 40 1 1.3897 -0.8721 -4.6156 41 1 1.5165 -4.5881 0.7300 42 1 2.2790 -3.2781 1.7806 43 1 0.0814 -2.0109 1.7949 44 1 -0.6809 -3.3206 0.7440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565869962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = -17.682949 kcal Electronic energy + Delta-G solvation = -23172.784100 eV Core-core repulsion = 20090.232063 eV Total energy + Delta-G solvation = -3082.552037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04480 -37.92071 -36.60617 -34.44821 -33.15255 -31.98477 -30.66820 -27.63375 -26.50524 -25.37698 -22.98070 -22.53221 -21.11064 -20.85096 -19.76684 -19.33781 -18.16662 -16.58452 -16.08595 -15.54542 -14.94107 -14.79309 -14.35145 -14.07311 -13.88285 -13.54789 -13.46614 -12.85546 -12.72063 -12.55861 -12.12829 -12.07860 -11.84037 -11.61711 -11.48398 -10.97182 -10.93388 -10.91886 -10.78374 -10.56570 -10.36530 -10.20060 -9.90827 -9.78893 -9.53726 -9.46206 -9.13830 -8.97963 -8.45773 -8.30349 -7.92159 -6.09643 -4.19300 3.18437 3.23286 3.31793 3.32840 3.79400 4.11114 4.33667 4.78350 4.86022 4.99182 5.05910 5.18830 5.28758 5.31711 5.40005 5.53014 5.61762 5.64192 5.74362 5.84706 5.91637 5.98465 6.04010 6.07056 6.12306 6.24897 6.28372 6.32519 6.39610 6.44787 6.50801 6.54924 6.60634 6.68243 6.73655 6.89761 6.93373 7.12438 7.30455 7.40627 7.57429 7.77538 8.32636 8.44205 8.82153 9.01754 9.48306 10.97960 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.008431 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.765948 B = 3320.367691 C = 4555.400401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.497 4.497 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.164 3.836 11 N -0.690 5.690 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.178 4.178 15 H 0.120 0.880 16 C -0.146 4.146 17 C -0.095 4.095 18 C -0.079 4.079 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.214 4.214 24 C -0.142 4.142 25 H 0.260 0.740 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.403 0.597 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -0.698 -8.402 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.040 3.960 11 N -0.338 5.338 12 C 0.321 3.679 13 O -0.443 6.443 14 C -0.199 4.199 15 H 0.137 0.863 16 C -0.184 4.184 17 C -0.095 4.095 18 C -0.116 4.116 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.121 4.121 23 C -0.251 4.251 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.239 0.761 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.997 -0.859 -8.625 11.793 hybrid contribution 0.732 1.051 0.320 1.320 sum 8.730 0.192 -8.305 12.051 Atomic orbital electron populations 1.69999 1.05858 1.26807 1.47982 1.24906 0.94658 0.98630 0.94131 0.86935 0.79997 0.84067 0.78958 1.19060 1.21606 1.19963 1.20237 0.92174 0.88455 1.52585 0.92338 1.19053 0.99275 0.93665 0.85711 1.20885 0.87447 0.96847 0.90812 1.45880 1.16590 1.64521 1.06821 1.19496 0.88081 0.77635 0.82686 1.90633 1.31188 1.47527 1.74978 1.22376 0.99469 1.02080 0.96014 0.86256 1.23003 1.03073 1.00951 0.91348 1.21558 0.96950 0.88652 1.02347 1.21159 0.92892 0.99282 0.98267 1.21527 0.98099 0.97731 0.98108 1.21482 0.95647 0.97436 1.00902 1.21635 0.95810 1.00039 0.98452 1.21177 0.96763 0.96099 0.98033 1.23107 1.01027 0.95531 1.05449 1.22432 0.90604 1.01088 1.03881 0.92959 0.91752 0.94726 0.76118 0.88540 0.87923 0.91943 0.91487 0.92355 0.91523 0.92699 0.92376 0.92085 0.89667 0.91977 0.91365 0.91801 0.90474 0.89459 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.44 12.46 55.43 0.69 -22.75 16 2 C 0.08 2.06 5.42 -17.82 -0.10 1.97 16 3 Si 0.87 19.55 29.54 -169.99 -5.02 14.53 16 4 H -0.27 -5.63 5.98 56.52 0.34 -5.29 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.50 -12.17 7.60 -34.44 -0.26 -12.43 16 8 H 0.06 1.41 7.82 -52.48 -0.41 1.00 16 9 C 0.02 0.54 1.82 -155.66 -0.28 0.26 16 10 C 0.16 3.66 5.75 -4.05 -0.02 3.63 16 11 N -0.69 -13.66 4.93 -60.30 -0.30 -13.95 16 12 C 0.54 10.35 5.90 -10.99 -0.06 10.29 16 13 O -0.56 -12.87 16.49 5.55 0.09 -12.78 16 14 C -0.18 -2.68 5.88 -91.84 -0.54 -3.22 16 15 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16 16 C -0.15 -1.98 9.50 -26.81 -0.25 -2.24 16 17 C -0.09 -1.30 1.97 -154.54 -0.31 -1.61 16 18 C -0.08 -0.89 5.67 -26.56 -0.15 -1.05 16 19 C -0.12 -1.43 5.93 -26.67 -0.16 -1.59 16 20 C -0.12 -1.66 5.82 -26.79 -0.16 -1.81 16 21 C -0.12 -2.07 5.51 -26.67 -0.15 -2.22 16 22 C -0.08 -1.32 5.28 -26.56 -0.14 -1.46 16 23 C -0.21 -4.47 9.88 -26.73 -0.26 -4.74 16 24 C -0.14 -3.25 9.04 -26.73 -0.24 -3.49 16 25 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 26 H 0.06 1.63 8.12 -51.93 -0.42 1.21 16 27 H 0.03 0.75 7.96 -51.93 -0.41 0.34 16 28 H 0.40 7.59 7.38 -40.82 -0.30 7.29 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.55 7.85 -51.93 -0.41 1.15 16 31 H 0.06 0.63 8.09 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.13 7.48 -51.93 -0.39 0.74 16 38 H 0.08 1.63 7.53 -51.93 -0.39 1.24 16 39 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.07 1.28 6.94 -51.93 -0.36 0.92 16 41 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.09 2.15 8.06 -51.93 -0.42 1.73 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -27.54 349.66 -10.13 -37.67 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -7.78 Total: 11.71 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.09 Total: -19.70 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.39 Total: -36.71 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.54 -10.13 -37.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565869962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.986 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds