Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48494 * 109.47025 * 269.99643 * 3 2 1 5 5 H 1.48497 * 109.47114 * 29.99923 * 3 2 1 6 6 H 1.48505 * 109.47022 * 149.99659 * 3 2 1 7 7 C 1.37878 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99782 * 182.91263 * 7 2 1 9 9 C 1.50701 * 120.00286 * 2.91702 * 7 2 1 10 10 C 1.53002 * 115.55093 * 88.20117 * 9 7 2 11 11 N 1.46492 * 109.47012 * 41.04928 * 10 9 7 12 12 C 1.34781 * 120.00278 * 186.14196 * 11 10 9 13 13 O 1.21283 * 119.99221 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00545 * 179.72439 * 12 11 10 15 15 H 1.08998 * 115.55365 * 57.26706 * 14 12 11 16 16 C 1.53035 * 117.50814 * 203.01162 * 14 12 11 17 17 C 1.52808 * 59.96503 * 107.47370 * 16 14 12 18 18 C 1.53145 * 117.75117 * 107.63222 * 17 16 14 19 19 C 1.53179 * 108.88948 * 199.61765 * 18 17 16 20 20 C 1.52935 * 109.45385 * 303.44160 * 19 18 17 21 21 C 1.52942 * 109.82469 * 62.97947 * 20 19 18 22 22 C 1.53151 * 117.75193 * 252.37515 * 17 16 14 23 23 C 1.52997 * 117.51838 * 233.90398 * 9 7 2 24 24 C 1.53003 * 117.49719 * 302.53394 * 9 7 2 25 25 H 0.97000 * 120.00285 * 5.03717 * 1 2 3 26 26 H 1.09007 * 109.46939 * 281.04971 * 10 9 7 27 27 H 1.08995 * 109.47081 * 161.05355 * 10 9 7 28 28 H 0.97003 * 120.00441 * 6.13528 * 11 10 9 29 29 H 1.08998 * 117.50519 * 214.95196 * 16 14 12 30 30 H 1.09007 * 117.49954 * 359.97438 * 16 14 12 31 31 H 1.09002 * 109.56973 * 319.44183 * 18 17 16 32 32 H 1.09005 * 109.57105 * 79.79961 * 18 17 16 33 33 H 1.08999 * 109.47603 * 183.44028 * 19 18 17 34 34 H 1.09005 * 109.47027 * 63.43564 * 19 18 17 35 35 H 1.09009 * 109.41205 * 302.86819 * 20 19 18 36 36 H 1.09003 * 109.41421 * 183.09050 * 20 19 18 37 37 H 1.09000 * 109.47462 * 177.02148 * 21 20 19 38 38 H 1.09002 * 109.47648 * 57.00304 * 21 20 19 39 39 H 1.09008 * 109.56484 * 280.19490 * 22 17 16 40 40 H 1.09000 * 109.57153 * 40.42856 * 22 17 16 41 41 H 1.09000 * 117.50091 * 214.96685 * 23 9 7 42 42 H 1.09003 * 117.49752 * 359.97438 * 23 9 7 43 43 H 1.09000 * 117.50004 * 359.97286 * 24 9 7 44 44 H 1.08993 * 117.49985 * 144.97303 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0835 -1.1947 0.0481 9 6 1.2525 -2.4984 -0.0653 10 6 0.9465 -3.0134 -1.4732 11 7 2.1112 -2.7990 -2.3354 12 6 2.0306 -3.0622 -3.6548 13 8 0.9935 -3.4761 -4.1282 14 6 3.2268 -2.8357 -4.5429 15 1 4.1309 -3.3750 -4.2603 16 6 2.9683 -2.6220 -6.0360 17 6 3.3965 -1.4469 -5.1580 18 6 4.8219 -0.9129 -5.3268 19 6 5.2039 -0.1152 -4.0761 20 6 4.1820 1.0001 -3.8514 21 6 2.8028 0.3944 -3.5870 22 6 2.3435 -0.3867 -4.8221 23 6 1.5433 -3.5375 1.0193 24 6 0.2178 -2.7732 1.0278 25 1 -0.4850 0.8368 -0.0738 26 1 0.0900 -2.4748 -1.8789 27 1 0.7183 -4.0782 -1.4289 28 1 2.9405 -2.4674 -1.9568 29 1 3.7023 -3.0208 -6.7361 30 1 1.9329 -2.6455 -6.3760 31 1 5.5119 -1.7473 -5.4525 32 1 4.8675 -0.2641 -6.2015 33 1 6.1938 0.3206 -4.2114 34 1 5.2140 -0.7785 -3.2111 35 1 4.1359 1.6332 -4.7377 36 1 4.4842 1.6011 -2.9937 37 1 2.0902 1.1916 -3.3756 38 1 2.8594 -0.2789 -2.7317 39 1 2.2309 0.2957 -5.6647 40 1 1.3897 -0.8721 -4.6156 41 1 1.5165 -4.5881 0.7300 42 1 2.2790 -3.2781 1.7806 43 1 0.0814 -2.0109 1.7949 44 1 -0.6809 -3.3206 0.7440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565869962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = -31.586160 kcal Electronic energy + Delta-G solvation = -23173.386988 eV Core-core repulsion = 20090.232063 eV Total energy + Delta-G solvation = -3083.154926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38254 -39.38054 -38.35717 -35.62959 -34.86044 -33.95196 -31.77907 -28.95555 -28.07550 -27.26633 -24.35265 -23.65944 -22.90774 -21.95917 -21.40897 -20.93099 -19.48909 -18.18322 -17.76591 -16.83419 -16.71049 -16.50502 -15.79322 -15.44417 -15.40235 -14.98938 -14.64130 -14.45902 -14.22673 -13.79280 -13.67140 -13.48868 -13.37606 -13.20431 -12.89315 -12.66265 -12.50294 -12.39531 -12.06165 -12.01013 -11.92669 -11.55987 -11.43566 -11.11619 -11.00852 -10.86567 -10.72381 -10.44057 -10.35971 -10.08816 -9.69424 -8.08236 -6.21259 1.42453 1.45244 1.50304 1.70199 2.37703 2.45418 2.84845 3.21859 3.47874 3.66508 3.74240 3.86860 3.95224 4.14137 4.23666 4.27048 4.36716 4.46757 4.48454 4.52372 4.62460 4.68250 4.72031 4.77020 4.85318 4.93107 5.00108 5.01774 5.04113 5.05927 5.16074 5.19801 5.27450 5.33649 5.37397 5.42536 5.50166 5.52824 5.62609 5.64986 5.75144 5.77686 6.37965 6.83389 6.87468 7.45072 7.49317 8.99224 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.008431 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.765948 B = 3320.367691 C = 4555.400401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.923 3.077 4 H -0.252 1.252 5 H -0.302 1.302 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.003 3.997 10 C 0.178 3.822 11 N -0.686 5.686 12 C 0.532 3.468 13 O -0.605 6.605 14 C -0.189 4.189 15 H 0.151 0.849 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.081 4.081 23 C -0.183 4.183 24 C -0.154 4.154 25 H 0.255 0.745 26 H 0.021 0.979 27 H 0.039 0.961 28 H 0.409 0.591 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.025 0.975 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -1.008 -9.867 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.749 3.251 4 H -0.177 1.177 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.002 3.998 10 C 0.053 3.947 11 N -0.334 5.334 12 C 0.320 3.680 13 O -0.488 6.488 14 C -0.209 4.209 15 H 0.169 0.831 16 C -0.172 4.172 17 C -0.087 4.087 18 C -0.108 4.108 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.119 4.119 23 C -0.220 4.220 24 C -0.192 4.192 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.246 0.754 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.597 -1.170 -10.088 15.415 hybrid contribution -0.460 1.135 0.799 1.462 sum 11.138 -0.035 -9.289 14.503 Atomic orbital electron populations 1.70131 1.07287 1.26975 1.49918 1.25513 0.95106 1.01424 0.94144 0.86143 0.78929 0.80590 0.79470 1.17660 1.22918 1.19073 1.20461 0.92379 0.89032 1.51111 0.91885 1.19131 0.99928 0.94406 0.86296 1.20531 0.87152 0.96248 0.90738 1.45796 1.15889 1.64627 1.07125 1.20310 0.88997 0.76141 0.82582 1.90606 1.33372 1.49322 1.75543 1.22427 0.98375 1.03975 0.96167 0.83129 1.23102 1.02923 1.00264 0.90884 1.21617 0.98012 0.87431 1.01614 1.21204 0.90874 1.00325 0.98379 1.21541 0.98570 0.96923 0.98297 1.21483 0.94094 0.98334 1.01360 1.21564 0.97399 0.98873 0.97983 1.21098 0.95723 0.96893 0.98169 1.23098 0.99136 0.96107 1.03626 1.22331 0.91845 1.01471 1.03532 0.93592 0.96024 0.94264 0.75384 0.84647 0.90298 0.89237 0.89653 0.89707 0.92463 0.90992 0.93164 0.94838 0.92246 0.90349 0.95582 0.89409 0.89793 0.91751 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 12.46 21.45 0.27 -50.57 16 2 C 0.04 2.03 5.42 84.65 0.46 2.49 16 3 Si 0.92 40.80 29.54 68.60 2.03 42.82 16 4 H -0.25 -10.49 5.98 99.48 0.59 -9.89 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.49 -24.32 7.60 25.60 0.19 -24.13 16 8 H 0.06 3.01 7.82 -2.91 -0.02 2.98 16 9 C 0.00 0.14 1.82 -52.93 -0.10 0.05 16 10 C 0.18 8.21 5.75 86.38 0.50 8.70 16 11 N -0.69 -27.49 4.93 -463.07 -2.28 -29.78 16 12 C 0.53 20.70 5.90 87.65 0.52 21.22 16 13 O -0.61 -28.60 16.49 -3.04 -0.05 -28.65 16 14 C -0.19 -5.26 5.88 -11.58 -0.07 -5.33 16 15 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 16 C -0.13 -3.27 9.50 30.54 0.29 -2.98 16 17 C -0.09 -2.14 1.97 -52.20 -0.10 -2.25 16 18 C -0.07 -1.25 5.67 30.70 0.17 -1.08 16 19 C -0.12 -2.35 5.93 30.63 0.18 -2.17 16 20 C -0.12 -2.98 5.82 30.55 0.18 -2.80 16 21 C -0.12 -4.08 5.51 30.64 0.17 -3.91 16 22 C -0.08 -2.56 5.28 30.71 0.16 -2.40 16 23 C -0.18 -7.42 9.88 30.59 0.30 -7.11 16 24 C -0.15 -7.16 9.04 30.60 0.28 -6.88 16 25 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 26 H 0.02 1.16 8.12 -2.38 -0.02 1.14 16 27 H 0.04 1.74 7.96 -2.39 -0.02 1.73 16 28 H 0.41 15.29 7.38 -92.71 -0.68 14.61 16 29 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.33 7.85 -2.38 -0.02 2.31 16 31 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 38 H 0.06 2.29 7.53 -2.39 -0.02 2.28 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.03 1.02 6.94 -2.39 -0.02 1.00 16 41 H 0.09 3.16 8.09 -2.39 -0.02 3.14 16 42 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.06 3.27 8.06 -2.39 -0.02 3.25 16 44 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.95 349.66 3.26 -59.69 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.17 Total: 35.06 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.13 Total: -28.57 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.01 Total: -80.34 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -62.95 3.26 -59.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565869962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.102 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds