Wall clock time and date at job start Mon Mar 30 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34790 * 119.85186 * 2 1 4 4 N 1.30464 * 121.70359 * 180.02562 * 3 2 1 5 5 C 1.34231 * 121.28720 * 0.02562 * 4 3 2 6 6 N 1.37994 * 120.22762 * 180.02562 * 5 4 3 7 7 C 1.46841 * 110.99760 * 119.20559 * 6 5 4 8 8 C 1.53041 * 109.52371 * 174.15864 * 7 6 5 9 9 C 1.53122 * 109.27646 * 59.18168 * 8 7 6 10 10 C 1.52998 * 109.52438 * 182.44294 * 9 8 7 11 11 C 1.50698 * 109.46903 * 294.68428 * 10 9 8 12 12 H 1.08003 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99874 * 179.97438 * 11 10 9 14 14 N 1.31507 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99870 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47135 * 60.00114 * 15 13 11 17 17 H 1.48494 * 109.46929 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46966 * 300.00250 * 15 13 11 19 19 C 1.53120 * 109.15994 * 302.35027 * 9 8 7 20 20 C 1.46843 * 110.99802 * 355.00058 * 6 5 4 21 21 C 1.38500 * 119.54050 * 359.97438 * 5 4 3 22 22 C 1.34937 * 119.84717 * 180.02562 * 2 1 3 23 23 O 1.22080 * 120.63609 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.46854 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47244 * 119.99863 * 1 2 3 26 26 H 1.08995 * 109.46793 * 240.00218 * 1 2 3 27 27 H 1.08000 * 119.15107 * 0.28715 * 3 2 1 28 28 H 1.09000 * 109.47043 * 294.17632 * 7 6 5 29 29 H 1.09007 * 109.46340 * 54.14832 * 7 6 5 30 30 H 1.08995 * 109.50447 * 299.24401 * 8 7 6 31 31 H 1.08999 * 109.50622 * 179.12033 * 8 7 6 32 32 H 1.09000 * 109.52418 * 62.25199 * 9 8 7 33 33 H 1.09003 * 109.47125 * 54.67957 * 10 9 8 34 34 H 1.08994 * 109.47027 * 174.68037 * 10 9 8 35 35 H 0.97005 * 120.00057 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.50034 * 297.70936 * 19 9 8 37 37 H 1.09000 * 109.50507 * 177.60103 * 19 9 8 38 38 H 1.09002 * 109.46409 * 305.84963 * 20 6 5 39 39 H 1.08999 * 109.46733 * 65.82448 * 20 6 5 40 40 H 1.07995 * 120.77778 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1360 1.1691 0.0000 4 7 3.4400 1.2112 -0.0005 5 6 4.1738 0.0872 -0.0015 6 7 5.5519 0.1573 -0.0015 7 6 6.1114 -0.4851 1.1945 8 6 7.6380 -0.5178 1.0908 9 6 8.1667 0.9136 0.9628 10 6 9.6874 0.8841 0.7976 11 6 10.3189 0.3446 2.0550 12 1 9.6977 0.0523 2.8888 13 6 11.6898 0.2240 2.1410 14 7 12.4461 0.5803 1.1259 15 14 12.4726 -0.4442 3.6999 16 1 11.9749 -1.8201 3.9533 17 1 13.9486 -0.4729 3.5395 18 1 12.1167 0.4299 4.8464 19 6 7.5315 1.5763 -0.2627 20 6 6.0081 1.5481 -0.1197 21 6 3.5381 -1.1433 -0.0016 22 6 2.1366 -1.1704 -0.0005 23 8 1.5352 -2.2327 -0.0015 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8899 26 1 -0.3633 -0.5138 0.8900 27 1 1.5798 2.0948 0.0047 28 1 5.8196 0.0792 2.0802 29 1 5.7308 -1.5037 1.2714 30 1 7.9308 -1.0936 0.2130 31 1 8.0538 -0.9806 1.9858 32 1 7.9075 1.4790 1.8579 33 1 9.9490 0.2430 -0.0443 34 1 10.0524 1.8943 0.6122 35 1 13.4106 0.4958 1.1865 36 1 7.8227 1.0333 -1.1619 37 1 7.8713 2.6094 -0.3349 38 1 5.5524 2.0064 -0.9975 39 1 5.7167 2.1030 0.7721 40 1 4.1088 -2.0601 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574530967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:55 Heat of formation + Delta-G solvation = -14.858852 kcal Electronic energy + Delta-G solvation = -21376.656152 eV Core-core repulsion = 18190.686233 eV Total energy + Delta-G solvation = -3185.969919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.81379 -40.61608 -38.52485 -36.98915 -35.23838 -33.96528 -32.30930 -31.41546 -29.91304 -28.06006 -26.04131 -25.79212 -23.93125 -23.67288 -22.33021 -20.62086 -19.29048 -18.68409 -18.36270 -17.90102 -17.37188 -16.66852 -16.40440 -15.94914 -15.63822 -15.28813 -15.09127 -14.78405 -14.44646 -14.31496 -14.23536 -13.77262 -13.64616 -13.40588 -13.27816 -13.00295 -12.75635 -12.52979 -12.30481 -12.13941 -11.76034 -11.57111 -11.34143 -11.32046 -11.12083 -10.91811 -10.74786 -10.50414 -10.05391 -9.20506 -8.15725 -6.25058 -0.34636 0.81119 1.41202 1.43414 1.50920 1.56630 2.32144 2.43055 2.65135 3.17755 3.18318 3.68427 3.84165 3.94398 3.97181 4.01959 4.22803 4.32997 4.40540 4.46378 4.52516 4.56239 4.61263 4.70076 4.79791 4.84348 4.90757 4.93992 5.11538 5.24536 5.33662 5.36744 5.41537 5.53599 5.58243 5.76423 5.83214 5.90847 6.07743 6.30801 6.77878 6.81473 6.91401 7.43381 8.95940 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038471 B = 0.003390 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.652716 B = 8258.215318 C = 8660.449538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.527 5.527 3 C 0.411 3.589 4 N -0.582 5.582 5 C 0.378 3.622 6 N -0.484 5.484 7 C 0.074 3.926 8 C -0.096 4.096 9 C -0.076 4.076 10 C 0.035 3.965 11 C -0.530 4.530 12 H 0.062 0.938 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.267 1.267 19 C -0.111 4.111 20 C 0.081 3.919 21 C -0.359 4.359 22 C 0.519 3.481 23 O -0.596 6.596 24 H 0.147 0.853 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.270 0.730 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.057 0.943 33 H -0.012 1.012 34 H -0.010 1.010 35 H 0.261 0.739 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.386 5.280 -1.577 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.243 5.243 3 C 0.127 3.873 4 N -0.308 5.308 5 C 0.159 3.841 6 N -0.199 5.199 7 C -0.050 4.050 8 C -0.134 4.134 9 C -0.095 4.095 10 C -0.002 4.002 11 C -0.568 4.568 12 H 0.081 0.919 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.149 4.149 20 C -0.045 4.045 21 C -0.388 4.388 22 C 0.322 3.678 23 O -0.480 6.480 24 H 0.165 0.835 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.286 0.714 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.804 4.995 -2.018 25.382 hybrid contribution 0.689 -1.056 0.950 1.579 sum -24.115 3.939 -1.068 24.457 Atomic orbital electron populations 1.22486 0.74036 1.07588 1.04233 1.46778 1.12226 1.07477 1.57843 1.26052 0.88138 0.90926 0.82178 1.68460 1.06121 1.29083 1.27155 1.20010 0.89426 0.89043 0.85662 1.58565 1.03228 1.20274 1.37813 1.22280 0.95460 0.99446 0.87816 1.21490 0.92358 0.97403 1.02182 1.21128 0.95575 0.95555 0.97210 1.18986 0.91381 0.94628 0.95253 1.21648 0.91953 1.41848 1.01378 0.91934 1.25933 0.98349 0.96057 0.99541 1.70092 1.05057 1.49665 1.32805 0.85604 0.77024 0.79259 0.79800 1.19280 1.21233 1.19187 1.21699 0.93988 1.01055 0.98170 1.21981 0.94511 0.85167 1.02841 1.22269 0.93213 0.98873 1.24399 1.16820 0.88606 0.83602 0.78728 1.90917 1.71246 1.30216 1.55657 0.83463 0.90564 0.90561 0.71431 0.92828 0.89337 0.92784 0.91171 0.92499 0.99386 0.99205 0.92988 0.92661 0.90725 0.88927 0.92367 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.12 127.77 1.29 1.67 16 2 N -0.53 -7.98 2.97 -679.59 -2.02 -10.00 16 3 C 0.41 4.30 11.48 180.35 2.07 6.37 16 4 N -0.58 -11.31 8.79 -196.78 -1.73 -13.04 16 5 C 0.38 9.82 6.28 132.70 0.83 10.66 16 6 N -0.48 -13.95 4.65 -702.01 -3.26 -17.22 16 7 C 0.07 2.20 5.28 86.33 0.46 2.65 16 8 C -0.10 -3.51 5.15 30.65 0.16 -3.35 16 9 C -0.08 -3.01 2.20 -10.71 -0.02 -3.03 16 10 C 0.03 1.79 4.45 29.85 0.13 1.92 16 11 C -0.53 -29.50 8.44 25.60 0.22 -29.29 16 12 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 13 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 14 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 15 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.11 -3.68 5.38 30.65 0.16 -3.52 16 20 C 0.08 2.21 4.63 86.33 0.40 2.61 16 21 C -0.36 -10.18 9.21 22.80 0.21 -9.97 16 22 C 0.52 14.01 7.42 84.69 0.63 14.64 16 23 O -0.60 -20.61 17.17 -5.58 -0.10 -20.70 16 24 H 0.15 -0.68 7.71 -2.39 -0.02 -0.70 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.27 -0.92 7.79 -2.91 -0.02 -0.94 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 2.47 6.97 -2.38 -0.02 2.46 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.70 7.05 -2.39 -0.02 2.68 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.09 2.30 7.81 -2.39 -0.02 2.28 16 39 H 0.06 1.53 8.06 -2.39 -0.02 1.51 16 40 H 0.14 4.20 7.47 -2.91 -0.02 4.18 16 Total: -1.00 -78.64 324.75 3.23 -75.42 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.02 Total: 4.44 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 7.00 Total: -8.26 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -6.72 Total: -97.15 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.10 Total: -20.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.64 3.23 -75.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574530967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.557 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds