Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46501 * 120.00254 * 2 1 4 4 C 1.53003 * 109.46959 * 270.00195 * 3 2 1 5 5 C 1.53005 * 109.46980 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00041 * 180.02562 * 2 1 3 8 8 O 1.21585 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.34775 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.39253 * 119.99783 * 184.28187 * 9 7 2 11 11 C 1.39478 * 119.83310 * 324.72072 * 10 9 7 12 12 C 1.36370 * 120.16798 * 180.25981 * 11 10 9 13 13 C 1.40867 * 119.82631 * 359.49237 * 12 11 10 14 14 C 1.41158 * 120.16048 * 180.23331 * 13 12 11 15 15 H 1.08001 * 120.00061 * 215.05514 * 14 13 12 16 16 C 1.39889 * 120.00078 * 35.05412 * 14 13 12 17 17 N 1.30875 * 120.00321 * 355.51375 * 16 14 13 18 18 Si 1.86810 * 119.99960 * 175.51002 * 16 14 13 19 19 H 1.48502 * 109.46901 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46675 * 120.00115 * 18 16 14 21 21 H 1.48488 * 109.47135 * 240.00221 * 18 16 14 22 22 C 1.40865 * 119.67470 * 0.52662 * 13 12 11 23 23 C 1.36376 * 119.82679 * 359.72858 * 22 13 12 24 24 H 1.09003 * 109.47398 * 270.00083 * 1 2 3 25 25 H 1.09009 * 109.47398 * 29.99633 * 1 2 3 26 26 H 1.08998 * 109.47448 * 149.99959 * 1 2 3 27 27 H 1.08995 * 109.46890 * 29.99710 * 3 2 1 28 28 H 1.08994 * 109.47637 * 150.00247 * 3 2 1 29 29 H 1.09000 * 109.47341 * 299.99672 * 4 3 2 30 30 H 1.09000 * 109.47524 * 59.99923 * 4 3 2 31 31 H 1.09000 * 109.47087 * 300.00159 * 5 4 3 32 32 H 1.09008 * 109.46853 * 60.00051 * 5 4 3 33 33 H 1.00894 * 110.99888 * 180.02562 * 6 5 4 34 34 H 1.00905 * 111.00159 * 303.95850 * 6 5 4 35 35 H 0.96992 * 120.00243 * 4.27344 * 9 7 2 36 36 H 1.07998 * 119.91667 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.08697 * 179.74678 * 12 11 10 38 38 H 0.97000 * 120.00449 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.08451 * 179.70825 * 22 13 12 40 40 H 1.08003 * 119.91478 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4425 6 7 3.4623 3.4595 -2.8275 7 6 2.1388 -1.1672 -0.0005 8 8 3.3547 -1.1672 -0.0010 9 7 1.4649 -2.3344 -0.0005 10 6 2.1583 -3.5387 0.0890 11 6 3.4029 -3.6701 -0.5267 12 6 4.0855 -4.8481 -0.4478 13 6 3.5352 -5.9302 0.2667 14 6 4.2379 -7.1511 0.3570 15 1 3.6972 -8.0861 0.3647 16 6 5.6345 -7.1502 0.4364 17 7 6.2947 -6.0244 0.3388 18 14 6.5572 -8.7558 0.6820 19 1 5.5869 -9.8772 0.7609 20 1 7.4776 -8.9777 -0.4621 21 1 7.3405 -8.6888 1.9417 22 6 2.2775 -5.7900 0.8854 23 6 1.6044 -4.6075 0.7934 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9564 31 1 2.6276 3.7952 -0.9288 32 1 4.1694 2.9057 -0.9286 33 1 3.9667 4.3329 -2.8544 34 1 3.9517 2.7436 -3.3434 35 1 0.4970 -2.3355 -0.0627 36 1 3.8251 -2.8384 -1.0711 37 1 5.0472 -4.9497 -0.9285 38 1 7.2632 -6.0236 0.3942 39 1 1.8473 -6.6169 1.4309 40 1 0.6398 -4.4985 1.2669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575195929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -3.049073 kcal Electronic energy + Delta-G solvation = -21006.223819 eV Core-core repulsion = 17820.766011 eV Total energy + Delta-G solvation = -3185.457808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10298 -37.65266 -36.27035 -34.83074 -34.40117 -32.84056 -30.66835 -29.43954 -28.72709 -26.82132 -25.34901 -23.93323 -21.71131 -21.24149 -20.72118 -19.21626 -17.92566 -17.23148 -16.55640 -16.18168 -15.50210 -15.33899 -15.07648 -14.72134 -14.22935 -13.87474 -13.46236 -13.42067 -12.88902 -12.68601 -12.53406 -12.44353 -12.06974 -11.98023 -11.67735 -11.51904 -11.36750 -11.13869 -10.86249 -10.81417 -10.45092 -9.91414 -9.81820 -9.53307 -9.02288 -8.94555 -8.71410 -8.53265 -7.45972 -6.80423 -6.53727 -4.27309 2.70638 2.94895 3.09988 3.14054 3.17305 3.21381 3.71033 4.03158 4.30687 4.38864 4.78124 4.84727 4.97342 5.05646 5.21974 5.23277 5.38259 5.53443 5.61466 5.64831 5.71470 5.99405 6.16844 6.18222 6.42850 6.55262 6.86355 6.87227 6.94715 7.10482 7.17721 7.19453 7.33913 7.40495 7.70988 7.85407 8.08059 8.15597 8.34843 8.48484 8.73779 8.99081 8.99726 9.15318 10.37502 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.003633 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.586910 B = 7705.441750 C = 8594.242202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.639 5.639 3 C 0.137 3.863 4 C -0.135 4.135 5 C 0.064 3.936 6 N -0.854 5.854 7 C 0.696 3.304 8 O -0.572 6.572 9 N -0.668 5.668 10 C 0.025 3.975 11 C -0.094 4.094 12 C -0.142 4.142 13 C 0.098 3.902 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.809 5.809 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.203 4.203 23 C -0.117 4.117 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.340 0.660 34 H 0.342 0.658 35 H 0.390 0.610 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 13.795 -2.004 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.013 3.987 4 C -0.174 4.174 5 C -0.068 4.068 6 N -0.383 5.383 7 C 0.398 3.602 8 O -0.448 6.448 9 N -0.316 5.316 10 C -0.068 4.068 11 C -0.114 4.114 12 C -0.162 4.162 13 C 0.095 3.905 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.436 5.436 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.223 4.223 23 C -0.137 4.137 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.225 0.775 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.097 13.914 -2.034 16.227 hybrid contribution 0.892 -0.668 0.489 1.217 sum -7.205 13.246 -1.545 15.158 Atomic orbital electron populations 1.21670 0.80383 1.02712 1.01458 1.47032 1.06000 1.05058 1.79697 1.21177 0.97731 0.83561 0.96222 1.21969 1.01166 0.96472 0.97812 1.21703 0.98682 0.96861 0.89532 1.58737 1.57034 1.08427 1.14097 1.15976 0.85528 0.80271 0.78456 1.90922 1.11363 1.85603 1.56925 1.42276 1.08998 1.03824 1.76465 1.17117 0.96505 0.84643 1.08532 1.20668 0.93951 0.97611 0.99198 1.21298 1.00997 0.92780 1.01154 1.17719 0.90529 0.93663 0.88549 1.19489 0.91121 0.93689 1.45211 0.90678 1.25878 0.98134 0.97615 0.92988 1.69804 1.08961 1.26783 1.38101 0.86175 0.79503 0.81979 0.78440 1.18663 1.20047 1.20062 1.20673 0.98906 0.96552 1.06176 1.20044 0.99178 0.94217 1.00295 0.92866 0.91065 0.91639 0.90921 0.89816 0.91373 0.91357 0.91138 0.95182 0.84831 0.84517 0.77468 0.87403 0.85271 0.91231 0.88567 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.24 59.84 0.61 1.38 16 2 N -0.64 -8.76 2.87 -187.36 -0.54 -9.30 16 3 C 0.14 1.63 5.41 -4.04 -0.02 1.61 16 4 C -0.13 -1.52 5.80 -26.73 -0.15 -1.67 16 5 C 0.06 0.60 6.79 -3.82 -0.03 0.58 16 6 N -0.85 -7.73 9.62 -10.36 -0.10 -7.82 16 7 C 0.70 13.11 8.11 -86.92 -0.70 12.41 16 8 O -0.57 -13.30 13.34 5.29 0.07 -13.23 16 9 N -0.67 -12.35 5.18 -14.10 -0.07 -12.42 16 10 C 0.02 0.56 6.31 -83.57 -0.53 0.04 16 11 C -0.09 -2.41 8.61 -39.79 -0.34 -2.76 16 12 C -0.14 -3.90 8.61 -39.26 -0.34 -4.24 16 13 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 14 C -0.46 -12.60 9.02 -37.86 -0.34 -12.94 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -22.01 10.61 55.54 0.59 -21.42 16 18 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 22 C -0.20 -4.99 9.74 -39.26 -0.38 -5.38 16 23 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.52 8.07 -51.92 -0.42 0.10 16 26 H 0.06 0.58 6.30 -51.93 -0.33 0.25 16 27 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.08 1.17 7.42 -51.93 -0.39 0.79 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.34 2.41 9.08 -39.29 -0.36 2.05 16 34 H 0.34 3.06 8.99 -39.29 -0.35 2.71 16 35 H 0.39 5.69 6.51 -40.82 -0.27 5.42 16 36 H 0.11 2.81 6.22 -52.49 -0.33 2.48 16 37 H 0.13 3.71 6.15 -52.49 -0.32 3.38 16 38 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -32.28 331.80 -9.07 -41.34 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -5.68 Total: 13.63 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.31 Total: -10.20 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.12 Total: -50.96 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.28 -9.07 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575195929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.295 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds