Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46501 * 120.00254 * 2 1 4 4 C 1.53003 * 109.46959 * 270.00195 * 3 2 1 5 5 C 1.53005 * 109.46980 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00041 * 180.02562 * 2 1 3 8 8 O 1.21585 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.34775 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.39253 * 119.99783 * 184.28187 * 9 7 2 11 11 C 1.39478 * 119.83310 * 324.72072 * 10 9 7 12 12 C 1.36370 * 120.16798 * 180.25981 * 11 10 9 13 13 C 1.40867 * 119.82631 * 359.49237 * 12 11 10 14 14 C 1.41158 * 120.16048 * 180.23331 * 13 12 11 15 15 H 1.08001 * 120.00061 * 215.05514 * 14 13 12 16 16 C 1.39889 * 120.00078 * 35.05412 * 14 13 12 17 17 N 1.30875 * 120.00321 * 355.51375 * 16 14 13 18 18 Si 1.86810 * 119.99960 * 175.51002 * 16 14 13 19 19 H 1.48502 * 109.46901 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46675 * 120.00115 * 18 16 14 21 21 H 1.48488 * 109.47135 * 240.00221 * 18 16 14 22 22 C 1.40865 * 119.67470 * 0.52662 * 13 12 11 23 23 C 1.36376 * 119.82679 * 359.72858 * 22 13 12 24 24 H 1.09003 * 109.47398 * 270.00083 * 1 2 3 25 25 H 1.09009 * 109.47398 * 29.99633 * 1 2 3 26 26 H 1.08998 * 109.47448 * 149.99959 * 1 2 3 27 27 H 1.08995 * 109.46890 * 29.99710 * 3 2 1 28 28 H 1.08994 * 109.47637 * 150.00247 * 3 2 1 29 29 H 1.09000 * 109.47341 * 299.99672 * 4 3 2 30 30 H 1.09000 * 109.47524 * 59.99923 * 4 3 2 31 31 H 1.09000 * 109.47087 * 300.00159 * 5 4 3 32 32 H 1.09008 * 109.46853 * 60.00051 * 5 4 3 33 33 H 1.00894 * 110.99888 * 180.02562 * 6 5 4 34 34 H 1.00905 * 111.00159 * 303.95850 * 6 5 4 35 35 H 0.96992 * 120.00243 * 4.27344 * 9 7 2 36 36 H 1.07998 * 119.91667 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.08697 * 179.74678 * 12 11 10 38 38 H 0.97000 * 120.00449 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.08451 * 179.70825 * 22 13 12 40 40 H 1.08003 * 119.91478 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4425 6 7 3.4623 3.4595 -2.8275 7 6 2.1388 -1.1672 -0.0005 8 8 3.3547 -1.1672 -0.0010 9 7 1.4649 -2.3344 -0.0005 10 6 2.1583 -3.5387 0.0890 11 6 3.4029 -3.6701 -0.5267 12 6 4.0855 -4.8481 -0.4478 13 6 3.5352 -5.9302 0.2667 14 6 4.2379 -7.1511 0.3570 15 1 3.6972 -8.0861 0.3647 16 6 5.6345 -7.1502 0.4364 17 7 6.2947 -6.0244 0.3388 18 14 6.5572 -8.7558 0.6820 19 1 5.5869 -9.8772 0.7609 20 1 7.4776 -8.9777 -0.4621 21 1 7.3405 -8.6888 1.9417 22 6 2.2775 -5.7900 0.8854 23 6 1.6044 -4.6075 0.7934 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9564 31 1 2.6276 3.7952 -0.9288 32 1 4.1694 2.9057 -0.9286 33 1 3.9667 4.3329 -2.8544 34 1 3.9517 2.7436 -3.3434 35 1 0.4970 -2.3355 -0.0627 36 1 3.8251 -2.8384 -1.0711 37 1 5.0472 -4.9497 -0.9285 38 1 7.2632 -6.0236 0.3942 39 1 1.8473 -6.6169 1.4309 40 1 0.6398 -4.4985 1.2669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575195929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -25.540882 kcal Electronic energy + Delta-G solvation = -21007.199137 eV Core-core repulsion = 17820.766011 eV Total energy + Delta-G solvation = -3186.433126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57209 -39.38323 -37.45721 -36.17595 -35.86165 -34.61006 -31.75303 -31.37812 -30.48846 -27.75202 -26.97537 -25.25978 -23.20086 -22.81013 -22.22369 -20.72214 -19.29994 -19.18561 -18.06026 -17.12343 -17.06381 -16.55071 -16.42330 -15.83151 -15.70621 -15.45118 -14.92432 -14.56095 -14.50974 -14.16699 -13.95361 -13.58602 -13.42791 -13.38428 -13.13803 -12.90615 -12.84755 -12.62226 -12.38951 -12.26776 -11.79255 -11.74951 -11.65090 -11.28825 -10.89079 -10.52879 -9.69805 -9.67448 -9.43089 -8.68274 -8.47622 -6.30569 0.86988 1.14834 1.39238 1.46596 1.55507 1.71228 2.17969 2.25368 2.84087 3.07289 3.61273 3.71318 3.94385 4.15867 4.26161 4.36698 4.43941 4.46248 4.50394 4.64217 4.67839 4.82576 4.88159 4.98788 5.05563 5.14845 5.18382 5.23441 5.35141 5.43824 5.60306 5.71192 5.81807 6.06256 6.14524 6.15008 6.18143 6.38612 6.52366 6.73402 6.98338 7.03217 7.05170 7.64746 8.45729 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.003633 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.586910 B = 7705.441750 C = 8594.242202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.629 5.629 3 C 0.134 3.866 4 C -0.124 4.124 5 C 0.067 3.933 6 N -0.859 5.859 7 C 0.688 3.312 8 O -0.625 6.625 9 N -0.659 5.659 10 C 0.040 3.960 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.064 3.936 14 C -0.496 4.496 15 H 0.080 0.920 16 C 0.021 3.979 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.207 4.207 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.022 0.978 33 H 0.351 0.649 34 H 0.341 0.659 35 H 0.413 0.587 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.281 0.719 39 H 0.114 0.886 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 14.688 -1.148 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.366 5.366 3 C 0.011 3.989 4 C -0.163 4.163 5 C -0.064 4.064 6 N -0.389 5.389 7 C 0.390 3.610 8 O -0.506 6.506 9 N -0.309 5.309 10 C -0.055 4.055 11 C -0.130 4.130 12 C -0.186 4.186 13 C 0.061 3.939 14 C -0.527 4.527 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.478 5.478 18 Si 0.812 3.188 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.227 4.227 23 C -0.130 4.130 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.040 0.960 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.788 14.871 -1.187 18.410 hybrid contribution 1.561 -0.736 0.198 1.737 sum -9.227 14.135 -0.990 16.909 Atomic orbital electron populations 1.22029 0.77075 1.04598 1.03272 1.47103 1.08005 1.03727 1.77755 1.21366 0.97285 0.83573 0.96707 1.21844 1.01149 0.96316 0.97020 1.21676 0.98411 0.96403 0.89931 1.58756 1.57373 1.09018 1.13746 1.16261 0.85068 0.81526 0.78163 1.90898 1.14021 1.86551 1.59088 1.42046 1.09937 1.02476 1.76426 1.17166 0.95413 0.86404 1.06468 1.20655 0.95594 0.96567 1.00176 1.21149 1.00691 0.94152 1.02613 1.18055 0.92190 0.93946 0.89663 1.19776 0.92199 0.93884 1.46845 0.90206 1.26855 0.98729 1.01341 0.92073 1.69930 1.09407 1.29192 1.39222 0.85020 0.78007 0.77270 0.78478 1.17652 1.19325 1.19515 1.20958 0.97988 0.98100 1.05668 1.20403 1.00591 0.92765 0.99195 0.90989 0.88121 0.90947 0.86712 0.92600 0.95086 0.90381 0.89010 0.96013 0.83515 0.84736 0.74782 0.88862 0.87921 0.90870 0.86749 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.24 127.77 1.31 2.36 16 2 N -0.63 -15.93 2.87 -864.94 -2.48 -18.41 16 3 C 0.13 2.95 5.41 86.38 0.47 3.42 16 4 C -0.12 -2.66 5.80 30.60 0.18 -2.48 16 5 C 0.07 1.18 6.79 86.30 0.59 1.76 16 6 N -0.86 -14.56 9.62 -186.70 -1.80 -16.36 16 7 C 0.69 25.58 8.11 179.05 1.45 27.04 16 8 O -0.63 -30.15 13.34 -3.98 -0.05 -30.20 16 9 N -0.66 -23.30 5.18 -316.78 -1.64 -24.94 16 10 C 0.04 1.79 6.31 38.56 0.24 2.04 16 11 C -0.11 -5.86 8.61 22.13 0.19 -5.67 16 12 C -0.17 -9.61 8.61 22.48 0.19 -9.42 16 13 C 0.06 3.59 5.55 -21.28 -0.12 3.48 16 14 C -0.50 -27.71 9.02 23.39 0.21 -27.50 16 15 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 16 C 0.02 1.12 5.42 85.24 0.46 1.58 16 17 N -0.85 -48.42 10.61 21.82 0.23 -48.19 16 18 Si 0.99 40.56 29.56 68.60 2.03 42.59 16 19 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.21 -10.07 9.74 22.48 0.22 -9.86 16 23 C -0.11 -4.65 9.90 22.13 0.22 -4.43 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.95 8.07 -2.38 -0.02 0.93 16 26 H 0.07 0.97 6.30 -2.39 -0.02 0.96 16 27 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.06 1.57 7.42 -2.39 -0.02 1.55 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.35 4.51 9.08 -89.70 -0.81 3.69 16 34 H 0.34 6.03 8.99 -89.69 -0.81 5.22 16 35 H 0.41 10.69 6.51 -92.71 -0.60 10.08 16 36 H 0.09 5.19 6.22 -2.91 -0.02 5.17 16 37 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 38 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 39 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -75.00 331.80 0.75 -74.25 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -1.15 Total: 38.93 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 5.61 Total: -17.68 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -5.69 Total: -107.89 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.00 0.75 -74.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575195929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.711 kcal (2) G-P(sol) polarization free energy of solvation -74.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds