Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.45796 * 295.02657 * 10 9 7 12 12 C 1.53199 * 109.30870 * 178.60316 * 11 10 9 13 13 N 1.46922 * 108.76488 * 54.65388 * 12 11 10 14 14 C 1.34782 * 120.62919 * 126.40548 * 13 12 11 15 15 O 1.21284 * 120.00139 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99821 * 359.97438 * 14 13 12 17 17 H 1.09002 * 115.55057 * 325.67147 * 16 14 13 18 18 C 1.52999 * 117.49440 * 111.38224 * 16 14 13 19 19 C 1.52998 * 60.00107 * 107.48944 * 18 16 14 20 20 H 1.09001 * 117.51118 * 252.51669 * 19 18 16 21 21 C 1.52996 * 117.50307 * 107.48794 * 19 18 16 22 22 C 1.53001 * 117.50290 * 180.12359 * 21 19 18 23 23 C 1.53007 * 117.49833 * 111.46171 * 21 19 18 24 24 C 1.46925 * 118.74405 * 306.38305 * 13 12 11 25 25 C 1.53039 * 109.45667 * 174.97104 * 10 9 7 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09002 * 109.46176 * 55.00529 * 10 9 7 30 30 H 1.08996 * 109.49758 * 298.56658 * 11 10 9 31 31 H 1.08993 * 109.49736 * 58.66962 * 11 10 9 32 32 H 1.08997 * 109.59925 * 294.86572 * 12 11 10 33 33 H 1.08998 * 109.58310 * 174.43271 * 12 11 10 34 34 H 1.09007 * 117.49423 * 214.97601 * 18 16 14 35 35 H 1.08991 * 117.50138 * 359.97438 * 18 16 14 36 36 H 1.09002 * 115.55083 * 325.79658 * 21 19 18 37 37 H 1.09000 * 117.49279 * 359.97438 * 22 21 19 38 38 H 1.08990 * 117.50056 * 145.02068 * 22 21 19 39 39 H 1.09002 * 117.49603 * 214.97829 * 23 21 19 40 40 H 1.08996 * 117.49736 * 359.97438 * 23 21 19 41 41 H 1.09003 * 109.58466 * 293.82576 * 24 13 12 42 42 H 1.08993 * 109.58871 * 173.39203 * 24 13 12 43 43 H 1.08997 * 109.50191 * 301.33586 * 25 10 9 44 44 H 1.09000 * 109.49720 * 61.40419 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.0407 -3.6528 -1.3080 12 6 4.0591 -4.7972 -1.2896 13 7 3.3503 -6.0563 -1.0235 14 6 3.4919 -7.1118 -1.8497 15 8 2.9018 -8.1460 -1.6189 16 6 4.3834 -7.0070 -3.0601 17 1 4.4103 -6.0291 -3.5410 18 6 5.6725 -7.8312 -3.0615 19 6 4.5024 -8.2396 -3.9588 20 1 3.9356 -9.1262 -3.6746 21 6 4.6505 -8.0052 -5.4634 22 6 3.4793 -8.4110 -6.3603 23 6 4.7675 -9.2379 -6.3622 24 6 2.4847 -6.1433 0.1604 25 6 1.4842 -4.9837 0.1260 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.9294 -3.5550 0.8414 30 1 2.3599 -3.7849 -2.1489 31 1 3.5640 -2.7020 -1.4088 32 1 4.7949 -4.6193 -0.5054 33 1 4.5593 -4.8566 -2.2562 34 1 6.5479 -7.3954 -3.5433 35 1 5.8759 -8.4488 -2.1869 36 1 5.2187 -7.1194 -5.7476 37 1 2.6034 -8.8453 -5.8784 38 1 3.2771 -7.7924 -7.2346 39 1 5.4123 -9.1629 -7.2379 40 1 4.7394 -10.2157 -5.8815 41 1 3.0921 -6.0751 1.0630 42 1 1.9462 -7.0909 0.1506 43 1 0.8995 -4.9802 1.0458 44 1 0.8178 -5.1028 -0.7283 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583695971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = -7.512410 kcal Electronic energy + Delta-G solvation = -21523.535438 eV Core-core repulsion = 18441.424428 eV Total energy + Delta-G solvation = -3082.111010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29946 -38.40283 -37.16947 -35.13708 -33.98183 -32.12979 -30.80407 -28.13721 -25.54906 -24.10021 -23.55218 -22.77269 -22.49860 -21.44926 -20.37441 -19.59146 -18.57428 -17.16763 -16.32540 -16.15329 -15.60452 -15.03480 -14.69666 -14.54608 -13.94977 -13.68107 -13.51931 -13.26076 -12.91021 -12.71492 -12.46268 -12.22295 -11.83549 -11.78795 -11.52444 -11.40355 -11.18969 -11.05295 -11.00440 -10.79437 -10.69900 -10.47397 -10.24612 -10.14580 -9.83138 -9.64699 -9.52453 -9.26248 -8.99116 -8.37321 -8.33040 -6.01218 -4.03537 2.55190 3.08264 3.30608 3.36051 3.37328 3.39646 3.99692 4.22850 4.43632 4.53718 4.59264 4.74932 4.91936 5.02166 5.06858 5.10593 5.22977 5.33635 5.38450 5.43007 5.47734 5.51658 5.53524 5.68693 5.69352 5.77002 5.81406 5.88170 5.92280 5.99507 6.07854 6.13508 6.37410 6.39243 6.51828 6.69162 6.95604 6.98484 7.09764 7.59327 7.65311 7.80250 7.98434 8.31362 8.40527 9.02830 9.60257 11.10034 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.003503 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.179427 B = 7991.796026 C = 8518.546590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.120 4.120 12 C 0.103 3.897 13 N -0.600 5.600 14 C 0.543 3.457 15 O -0.554 6.554 16 C -0.184 4.184 17 H 0.126 0.874 18 C -0.145 4.145 19 C -0.089 4.089 20 H 0.116 0.884 21 C -0.126 4.126 22 C -0.176 4.176 23 C -0.176 4.176 24 C 0.112 3.888 25 C -0.129 4.129 26 H 0.261 0.739 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.008 -15.028 -8.485 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.158 4.158 12 C -0.019 4.019 13 N -0.332 5.332 14 C 0.332 3.668 15 O -0.433 6.433 16 C -0.205 4.205 17 H 0.144 0.856 18 C -0.182 4.182 19 C -0.108 4.108 20 H 0.134 0.866 21 C -0.144 4.144 22 C -0.213 4.213 23 C -0.212 4.212 24 C -0.010 4.010 25 C -0.168 4.168 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.532 -15.436 -8.341 20.464 hybrid contribution 0.367 1.289 0.044 1.341 sum 10.898 -14.147 -8.298 19.692 Atomic orbital electron populations 1.69955 1.06060 1.26669 1.50793 1.25026 0.94804 0.99183 0.95452 0.86701 0.79605 0.83380 0.78555 1.20273 1.21368 1.20301 1.21200 0.92878 0.90971 1.50513 0.92650 1.19118 0.93602 0.90997 0.97195 1.21190 0.97992 0.94648 0.96085 1.21916 0.97609 0.97184 0.99099 1.21977 0.95137 0.83513 1.01270 1.48079 1.46397 1.12857 1.25886 1.19590 0.81295 0.82994 0.82950 1.90646 1.48649 1.29589 1.74424 1.22313 1.01020 0.98521 0.98640 0.85580 1.22980 0.91282 1.01838 1.02112 1.21768 1.01426 0.97741 0.89870 0.86564 1.21731 1.03191 0.99203 0.90271 1.22973 0.92754 1.03757 1.01814 1.22949 1.00856 0.95798 1.01643 1.21677 0.92591 1.00300 0.86455 1.22029 0.97633 0.94841 1.02250 0.92974 0.96645 0.96612 0.92350 0.92280 0.89690 0.91514 0.90265 0.87776 0.88264 0.87623 0.88523 0.88665 0.88761 0.88680 0.91829 0.89732 0.91129 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 8 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 11 C -0.12 -2.05 5.19 -26.61 -0.14 -2.19 16 12 C 0.10 1.41 6.35 -3.71 -0.02 1.39 16 13 N -0.60 -8.97 2.97 -172.77 -0.51 -9.49 16 14 C 0.54 8.28 7.48 -10.98 -0.08 8.20 16 15 O -0.55 -10.12 15.67 5.55 0.09 -10.04 16 16 C -0.18 -2.15 4.85 -91.77 -0.44 -2.59 16 17 H 0.13 1.33 6.57 -51.93 -0.34 0.99 16 18 C -0.14 -1.38 9.95 -26.73 -0.27 -1.65 16 19 C -0.09 -0.95 5.36 -90.62 -0.49 -1.44 16 20 H 0.12 1.43 7.67 -51.93 -0.40 1.03 16 21 C -0.13 -1.13 5.84 -90.62 -0.53 -1.66 16 22 C -0.18 -1.55 10.26 -26.69 -0.27 -1.82 16 23 C -0.18 -1.38 10.26 -26.69 -0.27 -1.65 16 24 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 25 C -0.13 -2.21 5.36 -26.61 -0.14 -2.35 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.53 6.91 -51.93 -0.36 1.17 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.90 5.51 -51.93 -0.29 0.61 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.34 7.00 -51.93 -0.36 0.98 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -30.90 351.66 -10.39 -41.29 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.59 Total: 0.63 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.38 Total: -18.00 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.22 Total: -35.30 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.90 -10.39 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583695971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.774 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds