Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.45796 * 295.02657 * 10 9 7 12 12 C 1.53199 * 109.30870 * 178.60316 * 11 10 9 13 13 N 1.46922 * 108.76488 * 54.65388 * 12 11 10 14 14 C 1.34782 * 120.62919 * 126.40548 * 13 12 11 15 15 O 1.21284 * 120.00139 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99821 * 359.97438 * 14 13 12 17 17 H 1.09002 * 115.55057 * 325.67147 * 16 14 13 18 18 C 1.52999 * 117.49440 * 111.38224 * 16 14 13 19 19 C 1.52998 * 60.00107 * 107.48944 * 18 16 14 20 20 H 1.09001 * 117.51118 * 252.51669 * 19 18 16 21 21 C 1.52996 * 117.50307 * 107.48794 * 19 18 16 22 22 C 1.53001 * 117.50290 * 180.12359 * 21 19 18 23 23 C 1.53007 * 117.49833 * 111.46171 * 21 19 18 24 24 C 1.46925 * 118.74405 * 306.38305 * 13 12 11 25 25 C 1.53039 * 109.45667 * 174.97104 * 10 9 7 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09002 * 109.46176 * 55.00529 * 10 9 7 30 30 H 1.08996 * 109.49758 * 298.56658 * 11 10 9 31 31 H 1.08993 * 109.49736 * 58.66962 * 11 10 9 32 32 H 1.08997 * 109.59925 * 294.86572 * 12 11 10 33 33 H 1.08998 * 109.58310 * 174.43271 * 12 11 10 34 34 H 1.09007 * 117.49423 * 214.97601 * 18 16 14 35 35 H 1.08991 * 117.50138 * 359.97438 * 18 16 14 36 36 H 1.09002 * 115.55083 * 325.79658 * 21 19 18 37 37 H 1.09000 * 117.49279 * 359.97438 * 22 21 19 38 38 H 1.08990 * 117.50056 * 145.02068 * 22 21 19 39 39 H 1.09002 * 117.49603 * 214.97829 * 23 21 19 40 40 H 1.08996 * 117.49736 * 359.97438 * 23 21 19 41 41 H 1.09003 * 109.58466 * 293.82576 * 24 13 12 42 42 H 1.08993 * 109.58871 * 173.39203 * 24 13 12 43 43 H 1.08997 * 109.50191 * 301.33586 * 25 10 9 44 44 H 1.09000 * 109.49720 * 61.40419 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.0407 -3.6528 -1.3080 12 6 4.0591 -4.7972 -1.2896 13 7 3.3503 -6.0563 -1.0235 14 6 3.4919 -7.1118 -1.8497 15 8 2.9018 -8.1460 -1.6189 16 6 4.3834 -7.0070 -3.0601 17 1 4.4103 -6.0291 -3.5410 18 6 5.6725 -7.8312 -3.0615 19 6 4.5024 -8.2396 -3.9588 20 1 3.9356 -9.1262 -3.6746 21 6 4.6505 -8.0052 -5.4634 22 6 3.4793 -8.4110 -6.3603 23 6 4.7675 -9.2379 -6.3622 24 6 2.4847 -6.1433 0.1604 25 6 1.4842 -4.9837 0.1260 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.9294 -3.5550 0.8414 30 1 2.3599 -3.7849 -2.1489 31 1 3.5640 -2.7020 -1.4088 32 1 4.7949 -4.6193 -0.5054 33 1 4.5593 -4.8566 -2.2562 34 1 6.5479 -7.3954 -3.5433 35 1 5.8759 -8.4488 -2.1869 36 1 5.2187 -7.1194 -5.7476 37 1 2.6034 -8.8453 -5.8784 38 1 3.2771 -7.7924 -7.2346 39 1 5.4123 -9.1629 -7.2379 40 1 4.7394 -10.2157 -5.8815 41 1 3.0921 -6.0751 1.0630 42 1 1.9462 -7.0909 0.1506 43 1 0.8995 -4.9802 1.0458 44 1 0.8178 -5.1028 -0.7283 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583695971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -23.047801 kcal Electronic energy + Delta-G solvation = -21524.209103 eV Core-core repulsion = 18441.424428 eV Total energy + Delta-G solvation = -3082.784675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43859 -39.40493 -38.35532 -35.95468 -35.68841 -33.96993 -32.11785 -29.88548 -26.96832 -25.41817 -24.44662 -24.09775 -23.22852 -22.88355 -21.28923 -20.87576 -19.78102 -18.42968 -18.25224 -17.17665 -16.61005 -16.48886 -16.08088 -15.63576 -15.28420 -14.96982 -14.77333 -14.51340 -14.25955 -14.17598 -13.70383 -13.41627 -13.36490 -12.97151 -12.74000 -12.48629 -12.45647 -12.33224 -12.28489 -12.13675 -12.11076 -11.79849 -11.76948 -11.37075 -11.14591 -10.98328 -10.86274 -10.74650 -10.50636 -10.38933 -9.61928 -8.15492 -6.25504 1.42701 1.45015 1.45383 1.52633 1.97923 2.43793 2.60752 3.18187 3.22166 3.39919 3.66198 3.77970 3.91900 4.00488 4.05354 4.12038 4.19680 4.22208 4.29823 4.35606 4.37786 4.41621 4.58426 4.67354 4.79599 4.82525 4.83287 4.88187 4.92476 5.02460 5.05879 5.09822 5.19338 5.29237 5.30458 5.32470 5.38756 5.40704 5.54306 5.59999 5.81632 5.89683 6.28995 6.43320 6.91378 7.13926 7.43490 8.96459 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.003503 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.179427 B = 7991.796026 C = 8518.546590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.115 4.115 12 C 0.112 3.888 13 N -0.603 5.603 14 C 0.537 3.463 15 O -0.592 6.592 16 C -0.195 4.195 17 H 0.143 0.857 18 C -0.121 4.121 19 C -0.094 4.094 20 H 0.092 0.908 21 C -0.128 4.128 22 C -0.190 4.190 23 C -0.165 4.165 24 C 0.118 3.882 25 C -0.122 4.122 26 H 0.261 0.739 27 H -0.017 1.017 28 H -0.016 1.016 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 -14.798 -9.404 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.087 0.913 9 C -0.004 4.004 10 C -0.092 4.092 11 C -0.153 4.153 12 C -0.009 4.009 13 N -0.335 5.335 14 C 0.328 3.672 15 O -0.474 6.474 16 C -0.216 4.216 17 H 0.161 0.839 18 C -0.159 4.159 19 C -0.113 4.113 20 H 0.110 0.890 21 C -0.146 4.146 22 C -0.227 4.227 23 C -0.201 4.201 24 C -0.005 4.005 25 C -0.160 4.160 26 H 0.069 0.931 27 H 0.001 0.999 28 H 0.003 0.997 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.879 -15.209 -9.263 22.578 hybrid contribution -0.759 1.172 0.350 1.439 sum 13.121 -14.037 -8.913 21.181 Atomic orbital electron populations 1.70115 1.07998 1.27588 1.52293 1.25996 0.95629 1.03396 0.95141 0.85549 0.78226 0.78267 0.79313 1.18792 1.21615 1.19151 1.21646 0.93691 0.91714 1.49446 0.91264 1.19015 0.94048 0.93271 0.94107 1.21040 0.97048 0.93239 0.97826 1.21807 0.97888 0.98669 0.96940 1.22006 0.93985 0.81145 1.03789 1.48189 1.46230 1.13404 1.25636 1.20243 0.81145 0.82306 0.83549 1.90628 1.50279 1.31069 1.75438 1.22323 1.01983 0.99773 0.97479 0.83942 1.23100 0.91178 1.00192 1.01402 1.21736 1.02070 0.96328 0.91141 0.88997 1.21774 1.03369 1.00384 0.89056 1.23015 0.92702 1.04657 1.02287 1.23022 1.00070 0.95287 1.01764 1.21560 0.92502 0.98692 0.87715 1.21910 0.97779 0.94744 1.01571 0.93068 0.99866 0.99735 0.91733 0.93762 0.90309 0.89626 0.87180 0.84762 0.88749 0.86001 0.90095 0.87702 0.86960 0.88892 0.89929 0.90451 0.91077 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -28.56 8.39 25.60 0.21 -28.34 16 8 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 9 C 0.03 1.68 4.45 29.85 0.13 1.81 16 10 C -0.07 -2.81 2.10 -10.77 -0.02 -2.84 16 11 C -0.11 -3.80 5.19 30.67 0.16 -3.64 16 12 C 0.11 2.74 6.35 86.37 0.55 3.29 16 13 N -0.60 -17.08 2.97 -818.89 -2.43 -19.52 16 14 C 0.54 15.77 7.48 87.66 0.66 16.43 16 15 O -0.59 -21.75 15.67 -3.04 -0.05 -21.80 16 16 C -0.19 -4.10 4.85 -11.54 -0.06 -4.15 16 17 H 0.14 2.51 6.57 -2.39 -0.02 2.50 16 18 C -0.12 -1.94 9.95 30.59 0.30 -1.63 16 19 C -0.09 -1.85 5.36 -10.79 -0.06 -1.91 16 20 H 0.09 2.27 7.67 -2.39 -0.02 2.25 16 21 C -0.13 -2.00 5.84 -10.79 -0.06 -2.06 16 22 C -0.19 -3.12 10.26 30.62 0.31 -2.81 16 23 C -0.16 -2.24 10.26 30.62 0.31 -1.92 16 24 C 0.12 3.52 6.43 86.36 0.56 4.07 16 25 C -0.12 -4.22 5.36 30.67 0.16 -4.06 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 28 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 2.05 5.51 -2.39 -0.01 2.04 16 34 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.08 2.45 7.00 -2.39 -0.02 2.44 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.88 351.66 4.41 -64.46 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.96 Total: 16.10 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.63 Total: -27.55 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.15 Total: -76.37 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.88 4.41 -64.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583695971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.417 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds