Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00172 * 2 1 4 4 C 1.52999 * 109.47108 * 90.00181 * 3 2 1 5 5 C 1.50706 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61686 * 125.02645 * 5 4 3 7 7 C 1.38627 * 119.15663 * 179.70253 * 6 5 4 8 8 C 1.38669 * 118.42388 * 0.51169 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.50231 * 8 7 6 10 10 N 1.31856 * 119.61480 * 304.99563 * 5 4 3 11 11 C 1.34775 * 120.00101 * 180.02562 * 2 1 3 12 12 O 1.21283 * 120.00660 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99791 * 359.97438 * 11 2 1 14 14 N 1.46901 * 109.47341 * 180.02562 * 13 11 2 15 15 C 1.46900 * 110.99974 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.46857 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99941 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99770 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46720 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46920 * 119.99900 * 20 18 16 23 23 H 1.48500 * 109.46918 * 239.99755 * 20 18 16 24 24 H 1.08996 * 109.47623 * 89.99619 * 1 2 3 25 25 H 1.08997 * 109.47430 * 210.00606 * 1 2 3 26 26 H 1.09005 * 109.46835 * 329.99796 * 1 2 3 27 27 H 1.08994 * 109.46915 * 329.99748 * 3 2 1 28 28 H 1.09003 * 109.46953 * 210.00335 * 3 2 1 29 29 H 1.08998 * 109.47200 * 60.00285 * 4 3 2 30 30 H 1.08994 * 109.47201 * 300.00064 * 4 3 2 31 31 H 1.07998 * 120.41947 * 359.94797 * 6 5 4 32 32 H 1.08008 * 120.78691 * 180.26734 * 7 6 5 33 33 H 1.08002 * 120.42244 * 179.78749 * 8 7 6 34 34 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 35 35 H 1.08997 * 109.47332 * 300.00359 * 13 11 2 36 36 H 1.09001 * 109.46988 * 60.00135 * 13 11 2 37 37 H 1.00902 * 110.99253 * 56.04563 * 14 13 11 38 38 H 1.08998 * 109.47036 * 300.00229 * 15 14 13 39 39 H 1.08998 * 109.46888 * 60.00573 * 15 14 13 40 40 H 0.96995 * 119.99861 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2056 3.0158 1.4424 6 6 2.6946 4.0992 2.1323 7 6 3.3983 5.2936 2.1310 8 6 4.5895 5.3572 1.4238 9 6 5.0377 4.2327 0.7573 10 7 4.3445 3.1111 0.7848 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 7 2.3399 -3.5889 -0.0005 15 6 1.6395 -4.8802 -0.0011 16 6 2.6490 -5.9992 -0.0005 17 1 3.7052 -5.7736 -0.0001 18 6 2.2242 -7.3109 -0.0014 19 7 0.9381 -7.5855 -0.0024 20 14 3.4755 -8.6979 0.0001 21 1 4.8466 -8.1275 0.0017 22 1 3.2855 -9.5346 1.2121 23 1 3.2891 -9.5340 -1.2129 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6085 2.0283 -0.5138 28 1 3.1499 1.1384 -0.5139 29 1 3.0417 0.9508 1.9563 30 1 1.5002 1.8407 1.9563 31 1 1.7611 4.0150 2.6687 32 1 3.0256 6.1554 2.6647 33 1 5.1620 6.2726 1.3982 34 1 5.9664 4.2728 0.2077 35 1 0.7590 -2.5302 0.8896 36 1 0.7583 -2.5298 -0.8903 37 1 2.9747 -3.5218 0.7809 38 1 1.0143 -4.9548 0.8886 39 1 1.0150 -4.9544 -0.8914 40 1 0.6392 -8.5083 -0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = 2.593295 kcal Electronic energy + Delta-G solvation = -20359.551983 eV Core-core repulsion = 17174.338846 eV Total energy + Delta-G solvation = -3185.213137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51370 -39.53263 -35.92547 -34.80881 -33.53464 -32.59420 -32.30477 -29.81919 -27.86690 -26.65265 -25.30262 -23.89113 -23.43331 -21.74904 -21.26654 -18.95588 -17.23149 -16.95808 -16.51962 -16.28374 -16.01654 -15.71686 -15.35964 -14.70886 -14.41503 -13.95251 -13.74339 -13.63243 -13.35536 -13.02396 -12.91684 -12.68053 -12.41333 -12.26542 -12.20836 -11.87003 -11.41073 -11.24037 -11.12686 -10.72113 -10.64888 -10.16094 -9.96475 -9.67131 -9.44644 -9.29155 -9.07498 -8.56029 -8.45999 -7.27745 -6.01248 -4.02184 0.81399 0.99871 2.98363 3.06813 3.34752 3.41726 3.48984 3.53533 4.05762 4.42585 4.47123 4.56196 4.73205 4.78740 4.82414 5.05903 5.10708 5.13735 5.22834 5.34954 5.38646 5.40428 5.41814 5.44962 5.62330 5.75920 5.86649 5.88037 5.89724 5.94670 6.05245 6.41522 6.59974 7.17751 7.39075 7.49215 7.77434 7.82166 8.12487 8.40694 8.49815 8.64200 9.07789 9.62714 11.10127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.002701 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.615656 B =10363.169781 C =10904.584792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.628 5.628 3 C 0.127 3.873 4 C -0.086 4.086 5 C 0.138 3.862 6 C -0.172 4.172 7 C -0.075 4.075 8 C -0.183 4.183 9 C 0.104 3.896 10 N -0.475 5.475 11 C 0.512 3.488 12 O -0.516 6.516 13 C 0.045 3.955 14 N -0.675 5.675 15 C 0.195 3.805 16 C -0.511 4.511 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.339 0.661 38 H -0.013 1.013 39 H 0.029 0.971 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 27.542 4.087 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.365 5.365 3 C 0.004 3.996 4 C -0.125 4.125 5 C 0.000 4.000 6 C -0.192 4.192 7 C -0.101 4.101 8 C -0.203 4.203 9 C -0.053 4.053 10 N -0.185 5.185 11 C 0.300 3.700 12 O -0.389 6.389 13 C -0.088 4.088 14 N -0.308 5.308 15 C 0.068 3.932 16 C -0.550 4.550 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.157 0.843 38 H 0.005 0.995 39 H 0.047 0.953 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.596 26.631 2.943 26.800 hybrid contribution -0.290 0.083 1.414 1.445 sum -0.886 26.714 4.356 27.081 Atomic orbital electron populations 1.21794 0.79666 1.03109 1.01941 1.47971 1.06850 1.05915 1.75719 1.21253 0.98630 0.84533 0.95191 1.20945 0.99129 0.93090 0.99366 1.21212 0.91344 0.95183 0.92291 1.22002 1.01711 0.93763 1.01714 1.21578 0.94241 0.97746 0.96514 1.22150 0.97815 1.00431 0.99877 1.22830 0.98677 0.87949 0.95850 1.67562 1.06327 1.26867 1.17700 1.21089 0.88384 0.85218 0.75293 1.90698 1.13881 1.86934 1.47396 1.21821 0.95489 0.89768 1.01742 1.60416 1.18289 1.01778 1.50278 1.19607 0.93893 0.83852 0.95811 1.21230 0.93631 0.90166 1.49938 0.91690 1.24987 0.95401 0.98916 0.95339 1.69969 1.13550 1.19204 1.51239 0.86399 0.81624 0.81733 0.77441 1.19547 1.21108 1.20995 0.92555 0.90615 0.91428 0.91184 0.88645 0.89224 0.90321 0.84837 0.84932 0.84898 0.82670 0.93532 0.88914 0.84324 0.99483 0.95266 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.24 59.85 0.61 1.32 16 2 N -0.63 -8.16 2.87 -181.57 -0.52 -8.68 16 3 C 0.13 1.53 5.26 -4.04 -0.02 1.51 16 4 C -0.09 -0.93 5.94 -27.88 -0.17 -1.10 16 5 C 0.14 1.48 6.18 -82.58 -0.51 0.97 16 6 C -0.17 -1.41 9.71 -39.44 -0.38 -1.80 16 7 C -0.07 -0.53 10.18 -39.28 -0.40 -0.93 16 8 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 9 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 10 N -0.48 -5.81 9.88 -9.47 -0.09 -5.90 16 11 C 0.51 8.91 7.71 -10.98 -0.08 8.83 16 12 O -0.52 -11.04 15.78 5.55 0.09 -10.95 16 13 C 0.04 0.81 4.72 -4.97 -0.02 0.79 16 14 N -0.68 -15.69 6.11 -116.33 -0.71 -16.41 16 15 C 0.19 5.21 5.44 -4.97 -0.03 5.18 16 16 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 16 17 H 0.06 1.91 7.81 -52.48 -0.41 1.50 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 20 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 26 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 27 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 28 H 0.10 1.44 7.23 -51.93 -0.38 1.06 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 31 H 0.13 0.79 7.95 -52.49 -0.42 0.37 16 32 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.05 0.77 7.40 -51.93 -0.38 0.38 16 36 H 0.09 1.59 8.11 -51.93 -0.42 1.16 16 37 H 0.34 7.92 8.42 -39.29 -0.33 7.59 16 38 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -35.28 342.67 -8.39 -43.67 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.01 Total: 2.20 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.02 Total: 0.04 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.59 Total: -57.33 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.28 -8.39 -43.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.263 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds