Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00172 * 2 1 4 4 C 1.52999 * 109.47108 * 90.00181 * 3 2 1 5 5 C 1.50706 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61686 * 125.02645 * 5 4 3 7 7 C 1.38627 * 119.15663 * 179.70253 * 6 5 4 8 8 C 1.38669 * 118.42388 * 0.51169 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.50231 * 8 7 6 10 10 N 1.31856 * 119.61480 * 304.99563 * 5 4 3 11 11 C 1.34775 * 120.00101 * 180.02562 * 2 1 3 12 12 O 1.21283 * 120.00660 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99791 * 359.97438 * 11 2 1 14 14 N 1.46901 * 109.47341 * 180.02562 * 13 11 2 15 15 C 1.46900 * 110.99974 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.46857 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99941 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99770 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46720 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46920 * 119.99900 * 20 18 16 23 23 H 1.48500 * 109.46918 * 239.99755 * 20 18 16 24 24 H 1.08996 * 109.47623 * 89.99619 * 1 2 3 25 25 H 1.08997 * 109.47430 * 210.00606 * 1 2 3 26 26 H 1.09005 * 109.46835 * 329.99796 * 1 2 3 27 27 H 1.08994 * 109.46915 * 329.99748 * 3 2 1 28 28 H 1.09003 * 109.46953 * 210.00335 * 3 2 1 29 29 H 1.08998 * 109.47200 * 60.00285 * 4 3 2 30 30 H 1.08994 * 109.47201 * 300.00064 * 4 3 2 31 31 H 1.07998 * 120.41947 * 359.94797 * 6 5 4 32 32 H 1.08008 * 120.78691 * 180.26734 * 7 6 5 33 33 H 1.08002 * 120.42244 * 179.78749 * 8 7 6 34 34 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 35 35 H 1.08997 * 109.47332 * 300.00359 * 13 11 2 36 36 H 1.09001 * 109.46988 * 60.00135 * 13 11 2 37 37 H 1.00902 * 110.99253 * 56.04563 * 14 13 11 38 38 H 1.08998 * 109.47036 * 300.00229 * 15 14 13 39 39 H 1.08998 * 109.46888 * 60.00573 * 15 14 13 40 40 H 0.96995 * 119.99861 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2056 3.0158 1.4424 6 6 2.6946 4.0992 2.1323 7 6 3.3983 5.2936 2.1310 8 6 4.5895 5.3572 1.4238 9 6 5.0377 4.2327 0.7573 10 7 4.3445 3.1111 0.7848 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 7 2.3399 -3.5889 -0.0005 15 6 1.6395 -4.8802 -0.0011 16 6 2.6490 -5.9992 -0.0005 17 1 3.7052 -5.7736 -0.0001 18 6 2.2242 -7.3109 -0.0014 19 7 0.9381 -7.5855 -0.0024 20 14 3.4755 -8.6979 0.0001 21 1 4.8466 -8.1275 0.0017 22 1 3.2855 -9.5346 1.2121 23 1 3.2891 -9.5340 -1.2129 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6085 2.0283 -0.5138 28 1 3.1499 1.1384 -0.5139 29 1 3.0417 0.9508 1.9563 30 1 1.5002 1.8407 1.9563 31 1 1.7611 4.0150 2.6687 32 1 3.0256 6.1554 2.6647 33 1 5.1620 6.2726 1.3982 34 1 5.9664 4.2728 0.2077 35 1 0.7590 -2.5302 0.8896 36 1 0.7583 -2.5298 -0.8903 37 1 2.9747 -3.5218 0.7809 38 1 1.0143 -4.9548 0.8886 39 1 1.0150 -4.9544 -0.8914 40 1 0.6392 -8.5083 -0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -22.795268 kcal Electronic energy + Delta-G solvation = -20360.652914 eV Core-core repulsion = 17174.338846 eV Total energy + Delta-G solvation = -3186.314068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26992 -40.74344 -37.21307 -36.57382 -34.59830 -34.19287 -33.23420 -30.82963 -29.52535 -27.59017 -26.89714 -24.87962 -24.31475 -23.37993 -22.40065 -20.22918 -18.70967 -18.05244 -17.73867 -17.29176 -17.15519 -16.89474 -16.55495 -16.18165 -15.78587 -15.09796 -14.97426 -14.76514 -14.32669 -14.25394 -14.06832 -13.94550 -13.67186 -13.35780 -13.25047 -13.04274 -12.98002 -12.67067 -12.61821 -12.50444 -12.10385 -12.04027 -11.40647 -10.80265 -10.76691 -10.66466 -10.33599 -9.98785 -9.59559 -9.15126 -8.24096 -6.34065 0.17752 0.40301 1.40555 1.41392 1.55923 1.62189 1.95671 2.40763 2.87029 3.09171 3.37675 3.55179 3.70106 3.78805 4.02798 4.12989 4.18525 4.26886 4.28779 4.33624 4.39991 4.43541 4.50237 4.69333 4.74290 4.82825 4.96204 4.96952 5.03687 5.08157 5.23329 5.26881 5.29688 5.55970 5.60880 5.83373 5.97884 6.28783 6.40540 6.64959 6.83758 7.11695 7.21790 7.36267 8.87541 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.002701 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.615656 B =10363.169781 C =10904.584792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.616 5.616 3 C 0.130 3.870 4 C -0.076 4.076 5 C 0.111 3.889 6 C -0.168 4.168 7 C -0.075 4.075 8 C -0.175 4.175 9 C 0.081 3.919 10 N -0.521 5.521 11 C 0.511 3.489 12 O -0.568 6.568 13 C 0.046 3.954 14 N -0.688 5.688 15 C 0.211 3.789 16 C -0.539 4.539 17 H 0.056 0.944 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.972 3.028 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.275 1.275 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.335 0.665 38 H -0.027 1.027 39 H 0.010 0.990 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 29.466 4.852 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.350 5.350 3 C 0.007 3.993 4 C -0.115 4.115 5 C -0.027 4.027 6 C -0.188 4.188 7 C -0.101 4.101 8 C -0.194 4.194 9 C -0.076 4.076 10 N -0.231 5.231 11 C 0.300 3.700 12 O -0.446 6.446 13 C -0.086 4.086 14 N -0.319 5.319 15 C 0.084 3.916 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.796 3.204 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.200 1.200 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.153 0.847 38 H -0.010 1.010 39 H 0.028 0.972 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.708 28.606 3.707 28.895 hybrid contribution -0.013 -0.364 1.172 1.228 sum -1.721 28.241 4.879 28.711 Atomic orbital electron populations 1.22133 0.76695 1.05029 1.03426 1.47970 1.08622 1.04868 1.73496 1.21279 0.97309 0.84372 0.96299 1.20828 1.00059 0.92585 0.98050 1.21259 0.91633 0.95876 0.93943 1.22274 1.02549 0.93231 1.00725 1.22037 0.93748 0.98358 0.95973 1.22494 0.98000 1.00584 0.98352 1.23153 0.99255 0.88241 0.96960 1.67469 1.07640 1.28723 1.19292 1.20928 0.87666 0.86196 0.75242 1.90679 1.15921 1.87695 1.50304 1.21872 0.94855 0.88614 1.03265 1.60257 1.19365 1.01937 1.50375 1.19255 0.93045 0.85256 0.94024 1.21535 0.93686 0.91638 1.50913 0.92601 1.25877 0.97526 1.01443 0.94470 1.70061 1.15291 1.20213 1.51339 0.85302 0.78821 0.78263 0.78018 1.19397 1.19871 1.20049 0.91252 0.90388 0.87920 0.88265 0.92475 0.92741 0.87251 0.82262 0.81564 0.81966 0.81720 0.91266 0.87765 0.84726 1.00985 0.97171 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.24 127.77 1.31 2.37 16 2 N -0.62 -15.53 2.87 -846.76 -2.43 -17.96 16 3 C 0.13 3.11 5.26 86.38 0.45 3.56 16 4 C -0.08 -1.63 5.94 29.85 0.18 -1.45 16 5 C 0.11 2.33 6.18 42.55 0.26 2.59 16 6 C -0.17 -2.35 9.71 22.36 0.22 -2.13 16 7 C -0.08 -0.83 10.18 22.47 0.23 -0.60 16 8 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 9 C 0.08 1.50 11.18 84.67 0.95 2.44 16 10 N -0.52 -13.14 9.88 -183.88 -1.82 -14.96 16 11 C 0.51 18.17 7.71 87.66 0.68 18.85 16 12 O -0.57 -25.64 15.78 -3.04 -0.05 -25.69 16 13 C 0.05 1.69 4.72 85.56 0.40 2.09 16 14 N -0.69 -32.95 6.11 -521.97 -3.19 -36.14 16 15 C 0.21 11.64 5.44 85.56 0.47 12.10 16 16 C -0.54 -32.26 9.32 25.60 0.24 -32.02 16 17 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 20 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 1.21 6.44 -2.39 -0.02 1.19 16 26 H 0.10 0.92 8.07 -2.38 -0.02 0.90 16 27 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 28 H 0.06 1.83 7.23 -2.39 -0.02 1.82 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 31 H 0.16 1.29 7.95 -2.91 -0.02 1.26 16 32 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.07 2.24 7.40 -2.39 -0.02 2.22 16 36 H 0.10 3.53 8.11 -2.39 -0.02 3.51 16 37 H 0.34 16.35 8.42 -89.69 -0.76 15.59 16 38 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -79.83 342.67 1.16 -78.67 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.27 Total: 17.58 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.07 Total: 6.65 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -7.16 Total: -124.97 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -79.83 1.16 -78.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.873 kcal (2) G-P(sol) polarization free energy of solvation -79.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds