Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42910 * 113.99840 * 2 1 4 4 C 1.50699 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.38114 * 120.39869 * 359.97438 * 4 3 2 6 6 C 1.39628 * 118.33463 * 180.02562 * 5 4 3 7 7 N 1.38535 * 120.53655 * 179.97438 * 6 5 4 8 8 C 1.46830 * 110.98211 * 304.21873 * 7 6 5 9 9 C 1.53038 * 109.51757 * 174.15526 * 8 7 6 10 10 C 1.53127 * 109.27941 * 59.17550 * 9 8 7 11 11 C 1.53117 * 109.15989 * 302.34585 * 10 9 8 12 12 H 1.09001 * 109.50874 * 297.71787 * 11 10 9 13 13 C 1.50701 * 109.53492 * 177.61137 * 11 10 9 14 14 H 1.07998 * 120.00331 * 240.17575 * 13 11 10 15 15 C 1.37879 * 119.99919 * 60.18201 * 13 11 10 16 16 N 1.31516 * 119.99798 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00064 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47441 * 59.99595 * 17 15 13 19 19 H 1.48504 * 109.46769 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46945 * 299.99744 * 17 15 13 21 21 C 1.46847 * 111.00230 * 180.02562 * 7 6 5 22 22 N 1.33000 * 118.93090 * 0.25711 * 6 5 4 23 23 C 1.31744 * 120.68902 * 359.48420 * 22 6 5 24 24 N 1.31796 * 121.83153 * 0.53192 * 23 22 6 25 25 H 1.08998 * 109.47314 * 299.99550 * 1 2 3 26 26 H 1.09002 * 109.47196 * 59.99986 * 1 2 3 27 27 H 1.08997 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47008 * 60.00097 * 3 2 1 29 29 H 1.08997 * 109.47115 * 300.00292 * 3 2 1 30 30 H 1.08002 * 120.83805 * 0.02562 * 5 4 3 31 31 H 1.08995 * 109.46742 * 54.13763 * 8 7 6 32 32 H 1.09004 * 109.45381 * 294.16097 * 8 7 6 33 33 H 1.08997 * 109.50308 * 299.23764 * 9 8 7 34 34 H 1.09000 * 109.50697 * 179.11489 * 9 8 7 35 35 H 1.08997 * 109.52581 * 182.44219 * 10 9 8 36 36 H 1.08998 * 109.57452 * 62.28001 * 10 9 8 37 37 H 0.96996 * 119.99812 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.46448 * 65.82080 * 21 7 6 39 39 H 1.08994 * 109.45958 * 305.84445 * 21 7 6 40 40 H 1.08005 * 119.08699 * 180.26499 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1152 -0.0561 0.0016 6 6 5.5102 -0.1161 0.0027 7 7 6.1621 -1.3384 0.0043 8 6 5.7285 -2.1641 1.1383 9 6 6.3561 -3.5555 1.0273 10 6 7.8816 -3.4229 1.0220 11 6 8.3035 -2.5190 -0.1396 12 1 8.0068 -2.9766 -1.0833 13 6 9.7992 -2.3353 -0.1176 14 1 10.2203 -1.3465 -0.0111 15 6 10.6299 -3.4295 -0.2337 16 7 10.1171 -4.6336 -0.3631 17 14 12.4837 -3.2018 -0.2072 18 1 12.8878 -2.5795 1.0791 19 1 13.1468 -4.5232 -0.3472 20 1 12.8904 -2.3217 -1.3321 21 6 7.6194 -1.1576 0.0059 22 7 6.2030 1.0192 0.0080 23 6 5.5862 2.1833 0.0019 24 7 4.2713 2.2734 0.0009 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.5224 -0.9589 0.0016 31 1 4.6423 -2.2538 1.1280 32 1 6.0454 -1.6961 2.0704 33 1 6.0289 -4.0295 0.1020 34 1 6.0466 -4.1633 1.8775 35 1 8.3324 -4.4077 0.8995 36 1 8.2134 -2.9850 1.9634 37 1 10.7015 -5.4035 -0.4444 38 1 7.9270 -0.6945 0.9435 39 1 7.9066 -0.5163 -0.8273 40 1 6.1744 3.0892 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = 8.708604 kcal Electronic energy + Delta-G solvation = -21542.941025 eV Core-core repulsion = 18357.993068 eV Total energy + Delta-G solvation = -3184.947957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03093 -38.53029 -37.92412 -34.46607 -33.30488 -32.12646 -30.40081 -29.97920 -28.16220 -26.19087 -25.11823 -24.20912 -23.46647 -21.44435 -21.21622 -18.84119 -17.56145 -17.33191 -16.30661 -16.26841 -15.97968 -15.28349 -15.07966 -14.75623 -14.49695 -14.29866 -13.91315 -13.53742 -13.10794 -12.73286 -12.64803 -12.50684 -12.38532 -11.86528 -11.69043 -10.95256 -10.88533 -10.73384 -10.68413 -10.45906 -10.19964 -10.08837 -9.91323 -9.57660 -9.48116 -9.18087 -9.05660 -8.74015 -8.32389 -7.97142 -5.99071 -4.04874 1.16889 1.28288 3.17169 3.33506 3.37706 3.40736 3.73692 4.01397 4.39301 4.43302 4.51436 4.87438 4.99186 5.01516 5.08164 5.19234 5.31109 5.35318 5.41202 5.43220 5.57432 5.68142 5.73644 5.89460 6.03573 6.32736 6.38526 6.49744 6.54339 6.69551 6.77670 6.86710 6.92825 7.18138 7.33156 7.46886 7.62486 7.74180 8.00997 8.11165 8.35742 8.45169 8.98317 9.59513 11.07349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.004033 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.440580 B = 6940.237772 C = 7688.056191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.117 3.883 4 C 0.175 3.825 5 C -0.225 4.225 6 C 0.367 3.633 7 N -0.471 5.471 8 C 0.069 3.931 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.051 3.949 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.077 3.923 22 N -0.554 5.554 23 C 0.321 3.679 24 N -0.553 5.553 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.261 0.739 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.023 8.573 2.565 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.040 3.960 4 C 0.032 3.968 5 C -0.251 4.251 6 C 0.126 3.874 7 N -0.186 5.186 8 C -0.057 4.057 9 C -0.157 4.157 10 C -0.152 4.152 11 C 0.032 3.968 12 H 0.053 0.947 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.048 4.048 22 N -0.275 5.275 23 C 0.031 3.969 24 N -0.273 5.273 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.170 0.830 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -16.418 8.654 2.137 18.682 hybrid contribution 0.574 -0.030 0.477 0.747 sum -15.845 8.625 2.615 18.228 Atomic orbital electron populations 1.22770 0.80150 1.03197 1.00155 1.87863 1.20183 1.26821 1.95554 1.20918 0.87899 0.85149 1.02071 1.20878 0.95254 0.88868 0.91814 1.22089 0.94348 1.00458 1.08205 1.20449 0.90181 0.89528 0.87240 1.58843 1.10897 1.08817 1.40026 1.22246 0.99486 0.94779 0.89154 1.21747 0.99339 0.93334 1.01286 1.21722 0.90470 1.04400 0.98648 1.18768 0.94016 0.88694 0.95324 0.94731 1.21057 0.90579 0.93346 1.50245 0.92602 1.24927 0.98637 0.95229 0.95005 1.69872 1.34847 0.98145 1.49956 0.86649 0.85507 0.77168 0.78616 1.20319 1.21336 1.20246 1.22366 0.80310 1.01131 1.01015 1.68502 1.41579 0.98665 1.18769 1.24662 0.87276 0.95211 0.89733 1.67951 1.07649 1.32564 1.19118 0.93840 0.93797 0.89172 0.90660 0.90600 0.83026 0.90993 0.94066 0.91603 0.92462 0.88661 0.94735 0.92956 0.94139 0.90810 0.78925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.18 9.25 -35.23 -0.33 -4.51 16 3 C 0.12 1.23 6.50 36.00 0.23 1.47 16 4 C 0.17 2.47 6.81 -82.33 -0.56 1.91 16 5 C -0.23 -3.53 8.57 -39.11 -0.34 -3.87 16 6 C 0.37 6.64 6.41 -154.77 -0.99 5.65 16 7 N -0.47 -9.17 4.68 -173.06 -0.81 -9.98 16 8 C 0.07 1.20 5.25 -3.84 -0.02 1.17 16 9 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 10 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 11 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 12 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 16 N -0.89 -25.12 11.36 55.43 0.63 -24.50 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 C 0.08 1.70 3.89 -3.83 -0.01 1.69 16 22 N -0.55 -9.93 8.85 -13.81 -0.12 -10.05 16 23 C 0.32 4.79 12.28 -92.20 -1.13 3.66 16 24 N -0.55 -8.08 10.37 -10.88 -0.11 -8.19 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.15 2.26 6.27 -52.49 -0.33 1.93 16 31 H 0.07 1.08 6.74 -51.93 -0.35 0.73 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 39 H 0.07 1.71 7.73 -51.93 -0.40 1.30 16 40 H 0.19 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -30.09 323.92 -9.50 -39.58 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.01 Total: 0.31 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.60 Total: -3.80 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.42 Total: -52.72 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.33 Total: -4.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.09 -9.50 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.292 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds