Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00137 * 2 1 4 4 C 1.50706 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.38119 * 120.39411 * 359.97438 * 4 3 2 6 6 C 1.39624 * 118.32846 * 180.02562 * 5 4 3 7 7 N 1.38543 * 120.53030 * 179.97438 * 6 5 4 8 8 C 1.46849 * 111.00015 * 55.79404 * 7 6 5 9 9 C 1.53036 * 109.52292 * 185.84016 * 8 7 6 10 10 C 1.53115 * 109.27876 * 300.81824 * 9 8 7 11 11 C 1.53122 * 109.16376 * 57.65253 * 10 9 8 12 12 H 1.09005 * 109.49743 * 62.28927 * 11 10 9 13 13 C 1.50701 * 109.50518 * 182.40585 * 11 10 9 14 14 H 1.07998 * 119.99925 * 119.79987 * 13 11 10 15 15 C 1.37879 * 119.99691 * 299.80705 * 13 11 10 16 16 N 1.31511 * 120.00361 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99370 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47505 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47019 * 119.99898 * 17 15 13 20 20 H 1.48500 * 109.46881 * 239.99628 * 17 15 13 21 21 C 1.46846 * 111.00000 * 179.97438 * 7 6 5 22 22 N 1.32991 * 118.93973 * 359.97438 * 6 5 4 23 23 C 1.31753 * 120.68859 * 0.02562 * 22 6 5 24 24 N 1.31795 * 121.82709 * 359.70747 * 23 22 6 25 25 H 1.08994 * 109.46942 * 59.99884 * 1 2 3 26 26 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46459 * 300.00527 * 1 2 3 28 28 H 1.09001 * 109.47678 * 60.00187 * 3 2 1 29 29 H 1.08998 * 109.47532 * 300.00132 * 3 2 1 30 30 H 1.07997 * 120.83606 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.45746 * 305.85132 * 8 7 6 32 32 H 1.08991 * 109.46519 * 65.82019 * 8 7 6 33 33 H 1.09000 * 109.50668 * 180.87166 * 9 8 7 34 34 H 1.09005 * 109.53592 * 60.77981 * 9 8 7 35 35 H 1.09007 * 109.52180 * 297.74670 * 10 9 8 36 36 H 1.09000 * 109.57924 * 177.59513 * 10 9 8 37 37 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46527 * 294.17512 * 21 7 6 39 39 H 1.09001 * 109.46107 * 54.14962 * 21 7 6 40 40 H 1.07998 * 119.08712 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1152 -0.0564 0.0016 6 6 5.5102 -0.1164 0.0027 7 7 6.1620 -1.3389 0.0043 8 6 5.7304 -2.1669 -1.1291 9 6 6.3580 -3.5580 -1.0145 10 6 7.8833 -3.4253 -1.0069 11 6 8.3034 -2.5192 0.1537 12 1 8.0052 -2.9753 1.0977 13 6 9.7990 -2.3356 0.1329 14 1 10.2202 -1.3470 0.0246 15 6 10.6295 -3.4296 0.2521 16 7 10.1166 -4.6334 0.3844 17 14 12.4835 -3.2020 0.2256 18 1 12.8031 -1.7606 0.0668 19 1 13.0616 -3.7003 1.4995 20 1 13.0596 -3.9644 -0.9110 21 6 7.6193 -1.1583 0.0046 22 7 6.2031 1.0187 0.0023 23 6 5.5864 2.1830 0.0013 24 7 4.2716 2.2730 -0.0050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6888 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.5223 -0.9591 0.0024 31 1 4.6442 -2.2567 -1.1203 32 1 6.0486 -1.7007 -2.0614 33 1 6.0498 -4.1674 -1.8640 34 1 6.0292 -4.0311 -0.0891 35 1 8.2157 -2.9886 -1.9488 36 1 8.3350 -4.4096 -0.8825 37 1 10.7010 -5.4031 0.4679 38 1 7.9283 -0.6969 -0.9333 39 1 7.9053 -0.5153 0.8371 40 1 6.1747 3.0887 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = 8.612313 kcal Electronic energy + Delta-G solvation = -21542.864234 eV Core-core repulsion = 18357.912101 eV Total energy + Delta-G solvation = -3184.952133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.03006 -38.53042 -37.92493 -34.46743 -33.30497 -32.12789 -30.40148 -29.98039 -28.16248 -26.19121 -25.12073 -24.21052 -23.46687 -21.44520 -21.21704 -18.84237 -17.56160 -17.33260 -16.30959 -16.26804 -15.98297 -15.28484 -15.08060 -14.75667 -14.49283 -14.29488 -13.91423 -13.53923 -13.10884 -12.73313 -12.64982 -12.51406 -12.38526 -11.86904 -11.69063 -10.98382 -10.88876 -10.72211 -10.66608 -10.45705 -10.18343 -10.08770 -9.91832 -9.57972 -9.48469 -9.17838 -9.05735 -8.72764 -8.33227 -7.97186 -5.99550 -4.05141 1.16897 1.28392 3.17153 3.30524 3.38625 3.43152 3.73463 4.01422 4.39336 4.43239 4.51423 4.87447 4.99215 5.01510 5.08190 5.19231 5.30879 5.35316 5.41192 5.43175 5.57344 5.68131 5.73616 5.89385 6.03440 6.32661 6.38421 6.49688 6.54238 6.69537 6.77676 6.86622 6.92769 7.17936 7.33083 7.46827 7.62393 7.74374 8.00701 8.10991 8.35734 8.45064 8.98556 9.59404 11.06938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.004033 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.442254 B = 6940.474374 C = 7688.185726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.117 3.883 4 C 0.175 3.825 5 C -0.225 4.225 6 C 0.367 3.633 7 N -0.470 5.470 8 C 0.069 3.931 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.050 3.950 12 H 0.035 0.965 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.077 3.923 22 N -0.554 5.554 23 C 0.321 3.679 24 N -0.554 5.554 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.095 0.905 37 H 0.259 0.741 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 8.603 -2.604 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.040 3.960 4 C 0.032 3.968 5 C -0.251 4.251 6 C 0.126 3.874 7 N -0.186 5.186 8 C -0.057 4.057 9 C -0.157 4.157 10 C -0.152 4.152 11 C 0.031 3.969 12 H 0.053 0.947 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.048 4.048 22 N -0.275 5.275 23 C 0.031 3.969 24 N -0.273 5.273 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -16.426 8.695 -2.177 18.712 hybrid contribution 0.571 -0.060 -0.474 0.744 sum -15.855 8.635 -2.651 18.248 Atomic orbital electron populations 1.22771 0.80146 1.03197 1.00156 1.87860 1.20185 1.26823 1.95553 1.20916 0.87898 0.85151 1.02069 1.20881 0.95253 0.88867 0.91811 1.22088 0.94347 1.00456 1.08221 1.20450 0.90188 0.89531 0.87232 1.58851 1.10942 1.08743 1.40035 1.22245 0.99502 0.94746 0.89168 1.21743 0.99340 0.93330 1.01290 1.21722 0.90479 1.04400 0.98639 1.18780 0.94069 0.88694 0.95335 0.94717 1.21131 0.90560 0.93425 1.49932 0.92492 1.24931 0.98651 0.95237 0.95032 1.69891 1.34630 0.98168 1.50115 0.86538 0.85704 0.78254 0.77531 1.19752 1.21042 1.21093 1.22365 0.80308 1.01132 1.01022 1.68499 1.41558 0.98664 1.18790 1.24663 0.87276 0.95204 0.89732 1.67950 1.07645 1.32564 1.19132 0.93832 0.89170 0.93804 0.90614 0.90654 0.83027 0.90994 0.94060 0.92467 0.91606 0.94747 0.88654 0.93074 0.94145 0.90794 0.78922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.18 9.25 -35.23 -0.33 -4.51 16 3 C 0.12 1.23 6.50 36.01 0.23 1.47 16 4 C 0.17 2.47 6.82 -82.33 -0.56 1.91 16 5 C -0.23 -3.53 8.57 -39.11 -0.34 -3.87 16 6 C 0.37 6.64 6.41 -154.78 -0.99 5.64 16 7 N -0.47 -9.16 4.68 -173.06 -0.81 -9.97 16 8 C 0.07 1.19 5.25 -3.83 -0.02 1.17 16 9 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 10 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 11 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 12 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.10 11.36 55.43 0.63 -24.47 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.08 1.70 3.89 -3.83 -0.01 1.69 16 22 N -0.55 -9.93 8.85 -13.81 -0.12 -10.05 16 23 C 0.32 4.79 12.28 -92.19 -1.13 3.66 16 24 N -0.55 -8.08 10.37 -10.88 -0.11 -8.19 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.15 2.26 6.27 -52.49 -0.33 1.93 16 31 H 0.07 1.08 6.75 -51.93 -0.35 0.73 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.04 0.92 8.12 -51.93 -0.42 0.49 16 39 H 0.07 1.71 7.73 -51.93 -0.40 1.31 16 40 H 0.19 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -30.12 323.92 -9.50 -39.62 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.01 Total: 0.24 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.60 Total: -3.78 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.42 Total: -52.69 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.33 Total: -4.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.12 -9.50 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.227 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds