Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00137 * 2 1 4 4 C 1.50706 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.38119 * 120.39411 * 359.97438 * 4 3 2 6 6 C 1.39624 * 118.32846 * 180.02562 * 5 4 3 7 7 N 1.38543 * 120.53030 * 179.97438 * 6 5 4 8 8 C 1.46849 * 111.00015 * 55.79404 * 7 6 5 9 9 C 1.53036 * 109.52292 * 185.84016 * 8 7 6 10 10 C 1.53115 * 109.27876 * 300.81824 * 9 8 7 11 11 C 1.53122 * 109.16376 * 57.65253 * 10 9 8 12 12 H 1.09005 * 109.49743 * 62.28927 * 11 10 9 13 13 C 1.50701 * 109.50518 * 182.40585 * 11 10 9 14 14 H 1.07998 * 119.99925 * 119.79987 * 13 11 10 15 15 C 1.37879 * 119.99691 * 299.80705 * 13 11 10 16 16 N 1.31511 * 120.00361 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99370 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47505 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47019 * 119.99898 * 17 15 13 20 20 H 1.48500 * 109.46881 * 239.99628 * 17 15 13 21 21 C 1.46846 * 111.00000 * 179.97438 * 7 6 5 22 22 N 1.32991 * 118.93973 * 359.97438 * 6 5 4 23 23 C 1.31753 * 120.68859 * 0.02562 * 22 6 5 24 24 N 1.31795 * 121.82709 * 359.70747 * 23 22 6 25 25 H 1.08994 * 109.46942 * 59.99884 * 1 2 3 26 26 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46459 * 300.00527 * 1 2 3 28 28 H 1.09001 * 109.47678 * 60.00187 * 3 2 1 29 29 H 1.08998 * 109.47532 * 300.00132 * 3 2 1 30 30 H 1.07997 * 120.83606 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.45746 * 305.85132 * 8 7 6 32 32 H 1.08991 * 109.46519 * 65.82019 * 8 7 6 33 33 H 1.09000 * 109.50668 * 180.87166 * 9 8 7 34 34 H 1.09005 * 109.53592 * 60.77981 * 9 8 7 35 35 H 1.09007 * 109.52180 * 297.74670 * 10 9 8 36 36 H 1.09000 * 109.57924 * 177.59513 * 10 9 8 37 37 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46527 * 294.17512 * 21 7 6 39 39 H 1.09001 * 109.46107 * 54.14962 * 21 7 6 40 40 H 1.07998 * 119.08712 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1152 -0.0564 0.0016 6 6 5.5102 -0.1164 0.0027 7 7 6.1620 -1.3389 0.0043 8 6 5.7304 -2.1669 -1.1291 9 6 6.3580 -3.5580 -1.0145 10 6 7.8833 -3.4253 -1.0069 11 6 8.3034 -2.5192 0.1537 12 1 8.0052 -2.9753 1.0977 13 6 9.7990 -2.3356 0.1329 14 1 10.2202 -1.3470 0.0246 15 6 10.6295 -3.4296 0.2521 16 7 10.1166 -4.6334 0.3844 17 14 12.4835 -3.2020 0.2256 18 1 12.8031 -1.7606 0.0668 19 1 13.0616 -3.7003 1.4995 20 1 13.0596 -3.9644 -0.9110 21 6 7.6193 -1.1583 0.0046 22 7 6.2031 1.0187 0.0023 23 6 5.5864 2.1830 0.0013 24 7 4.2716 2.2730 -0.0050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6888 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.5223 -0.9591 0.0024 31 1 4.6442 -2.2567 -1.1203 32 1 6.0486 -1.7007 -2.0614 33 1 6.0498 -4.1674 -1.8640 34 1 6.0292 -4.0311 -0.0891 35 1 8.2157 -2.9886 -1.9488 36 1 8.3350 -4.4096 -0.8825 37 1 10.7010 -5.4031 0.4679 38 1 7.9283 -0.6969 -0.9333 39 1 7.9053 -0.5153 0.8371 40 1 6.1747 3.0887 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -9.479821 kcal Electronic energy + Delta-G solvation = -21543.648768 eV Core-core repulsion = 18357.912101 eV Total energy + Delta-G solvation = -3185.736666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28131 -39.93346 -38.79237 -36.12907 -34.70141 -33.72813 -31.95745 -31.58454 -29.09786 -27.18423 -26.72292 -25.74751 -24.74720 -23.05191 -22.59108 -20.56437 -19.01395 -18.52821 -17.99323 -17.03864 -17.00045 -16.66540 -16.37662 -16.20390 -15.84083 -15.50703 -15.34381 -15.05275 -14.65097 -14.42145 -14.16279 -13.60323 -13.45281 -13.39155 -12.88259 -12.75187 -12.54967 -12.33911 -11.99847 -11.92462 -11.83048 -11.63739 -11.41494 -11.11319 -10.97802 -10.71437 -10.51071 -10.40456 -10.26461 -9.41773 -8.10405 -6.23892 0.00157 0.03807 1.40254 1.42167 1.53869 2.34055 2.38504 2.49197 2.79035 3.17129 3.26704 3.52468 3.71443 4.00294 4.07797 4.11041 4.27198 4.33635 4.38021 4.46933 4.51148 4.57473 4.62325 4.64371 4.70222 4.78237 4.88404 4.94358 4.97274 5.07318 5.20833 5.26596 5.45486 5.60964 5.62448 5.95286 6.07062 6.10667 6.13241 6.22403 6.38111 6.85798 7.15957 7.43812 8.94908 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.004033 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.442254 B = 6940.474374 C = 7688.185726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.121 3.879 4 C 0.178 3.822 5 C -0.227 4.227 6 C 0.346 3.654 7 N -0.482 5.482 8 C 0.072 3.928 9 C -0.110 4.110 10 C -0.107 4.107 11 C 0.050 3.950 12 H -0.001 1.001 13 C -0.536 4.536 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.101 3.899 22 N -0.585 5.585 23 C 0.318 3.682 24 N -0.550 5.550 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.262 0.738 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.819 9.706 -3.230 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.044 3.956 4 C 0.034 3.966 5 C -0.252 4.252 6 C 0.106 3.894 7 N -0.198 5.198 8 C -0.053 4.053 9 C -0.148 4.148 10 C -0.145 4.145 11 C 0.031 3.969 12 H 0.017 0.983 13 C -0.574 4.574 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.203 1.203 21 C -0.025 4.025 22 N -0.307 5.307 23 C 0.029 3.971 24 N -0.269 5.269 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.240 9.813 -2.805 20.901 hybrid contribution 1.028 -0.333 -0.262 1.112 sum -17.213 9.480 -3.067 19.888 Atomic orbital electron populations 1.22981 0.78172 1.04221 1.01432 1.87821 1.22306 1.26931 1.95798 1.21003 0.85274 0.85631 1.03724 1.21527 0.97240 0.88080 0.89730 1.22142 0.93069 1.01595 1.08409 1.20536 0.91187 0.89023 0.88675 1.58853 1.09014 1.10352 1.41531 1.22289 1.01139 0.93301 0.88540 1.21637 0.95863 0.94924 1.02336 1.21514 0.93791 1.01981 0.97229 1.18683 0.93393 0.90470 0.94363 0.98275 1.21447 0.92273 0.93266 1.50453 0.93269 1.25679 1.02989 0.94938 0.94599 1.70016 1.36082 0.98732 1.50372 0.85551 0.80405 0.78266 0.77708 1.19421 1.20573 1.20323 1.21842 0.82500 0.98659 0.99537 1.68470 1.42712 0.99536 1.19963 1.25302 0.87859 0.95287 0.88621 1.68088 1.07451 1.32581 1.18744 0.92421 0.88387 0.92632 0.88925 0.88662 0.82265 0.87822 0.94118 0.89425 0.92209 0.95410 0.91572 0.92908 0.95237 0.92602 0.75910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.69 9.25 -148.98 -1.38 -9.07 16 3 C 0.12 2.16 6.50 71.24 0.46 2.62 16 4 C 0.18 4.61 6.82 42.42 0.29 4.90 16 5 C -0.23 -6.75 8.57 22.58 0.19 -6.55 16 6 C 0.35 12.34 6.41 133.16 0.85 13.19 16 7 N -0.48 -18.87 4.68 -701.43 -3.28 -22.16 16 8 C 0.07 2.43 5.25 86.32 0.45 2.89 16 9 C -0.11 -4.04 6.09 30.64 0.19 -3.86 16 10 C -0.11 -5.07 5.03 30.67 0.15 -4.91 16 11 C 0.05 2.60 2.26 -11.48 -0.03 2.57 16 12 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 13 C -0.54 -30.43 8.56 25.60 0.22 -30.21 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.02 0.96 5.30 84.66 0.45 1.40 16 16 N -0.91 -52.86 11.36 21.45 0.24 -52.62 16 17 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 C 0.10 4.63 3.89 86.33 0.34 4.97 16 22 N -0.59 -20.81 8.85 -197.61 -1.75 -22.56 16 23 C 0.32 9.04 12.28 180.90 2.22 11.26 16 24 N -0.55 -14.83 10.37 -188.33 -1.95 -16.78 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 4.42 6.27 -2.91 -0.02 4.41 16 31 H 0.10 2.86 6.75 -2.39 -0.02 2.84 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 3.52 6.16 -2.39 -0.01 3.50 16 37 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.06 2.70 7.73 -2.39 -0.02 2.69 16 40 H 0.22 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -66.70 323.92 1.97 -64.73 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.02 Total: 12.35 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 7.04 Total: -0.18 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -6.74 Total: -114.12 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.38 Total: -9.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.70 1.97 -64.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.246 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds