Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48493 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46964 * 300.00334 * 3 2 1 6 6 H 1.48500 * 109.46743 * 60.00164 * 3 2 1 7 7 C 1.38951 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 199.29809 * 7 2 1 9 9 N 1.37097 * 119.99805 * 19.30835 * 7 2 1 10 10 C 1.34772 * 120.00264 * 44.07980 * 9 7 2 11 11 O 1.21295 * 120.00023 * 359.71914 * 10 9 7 12 12 C 1.50708 * 120.00003 * 180.02562 * 10 9 7 13 13 C 1.50221 * 117.30429 * 249.33145 * 12 10 9 14 14 H 1.08993 * 113.56287 * 358.91501 * 13 12 10 15 15 C 1.49045 * 129.13406 * 150.58725 * 13 12 10 16 16 C 1.54164 * 112.26986 * 134.47950 * 15 13 12 17 17 C 1.54376 * 109.17079 * 296.19845 * 16 15 13 18 18 C 1.51230 * 111.06697 * 101.00257 * 17 16 15 19 19 C 1.49146 * 120.89822 * 324.71429 * 18 17 16 20 20 C 1.54808 * 109.51877 * 277.97835 * 19 18 17 21 21 C 1.50912 * 117.30356 * 178.94392 * 12 10 9 22 22 H 1.08996 * 117.54092 * 215.55497 * 21 12 10 23 23 C 1.46505 * 120.00160 * 224.07423 * 9 7 2 24 24 C 1.53004 * 117.49296 * 3.31777 * 23 9 7 25 25 C 1.52999 * 59.99928 * 252.50695 * 24 23 9 26 26 H 0.97002 * 120.00469 * 354.90602 * 1 2 3 27 27 H 1.08999 * 115.43412 * 34.14143 * 12 10 9 28 28 H 1.09003 * 108.90218 * 13.84184 * 15 13 12 29 29 H 1.08997 * 109.01426 * 255.20267 * 15 13 12 30 30 H 1.09001 * 109.52205 * 176.29034 * 16 15 13 31 31 H 1.08997 * 109.57240 * 56.13911 * 16 15 13 32 32 H 1.09003 * 109.15721 * 340.59884 * 17 16 15 33 33 H 1.08997 * 109.16009 * 221.41938 * 17 16 15 34 34 H 1.09008 * 107.12748 * 201.78284 * 18 17 16 35 35 H 1.09001 * 107.12769 * 87.65192 * 18 17 16 36 36 H 1.09002 * 109.46754 * 157.96303 * 19 18 17 37 37 H 1.09003 * 109.45556 * 37.98960 * 19 18 17 38 38 H 1.09004 * 110.85661 * 298.15585 * 20 19 18 39 39 H 1.08994 * 110.86350 * 174.68931 * 20 19 18 40 40 H 1.08996 * 115.54864 * 149.01489 * 23 9 7 41 41 H 1.08993 * 117.50054 * 359.97438 * 24 23 9 42 42 H 1.08997 * 117.49670 * 145.01893 * 24 23 9 43 43 H 1.08995 * 117.50201 * 252.51716 * 25 24 23 44 44 H 1.09000 * 117.51912 * 107.48197 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3463 0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0433 -1.2295 0.3096 9 7 1.3811 -2.3574 -0.3915 10 6 0.5994 -2.3598 -1.4894 11 8 0.4471 -1.3397 -2.1277 12 6 -0.0910 -3.6284 -1.9200 13 6 0.3904 -4.2796 -3.1852 14 1 1.1978 -3.7356 -3.6753 15 6 0.3798 -5.7210 -3.5642 16 6 -0.1298 -5.9433 -5.0021 17 6 -1.6030 -5.4912 -5.0933 18 6 -1.7136 -4.1238 -5.7297 19 6 -0.6754 -3.0805 -5.4885 20 6 -0.9556 -2.3740 -4.1399 21 6 -0.9711 -3.5563 -3.1438 22 1 -1.8740 -4.1669 -3.1519 23 6 1.5602 -3.5881 0.3828 24 6 2.3964 -3.5029 1.6613 25 6 2.9619 -4.2002 0.4225 26 1 -0.4851 0.8367 0.0746 27 1 -0.4124 -4.2843 -1.1109 28 1 -0.2661 -6.2630 -2.8735 29 1 1.3922 -6.1167 -3.4838 30 1 -0.0571 -7.0011 -5.2548 31 1 0.4739 -5.3604 -5.6977 32 1 -2.0287 -5.4545 -4.0905 33 1 -2.1616 -6.2107 -5.6919 34 1 -2.6702 -3.7023 -5.4207 35 1 -1.7725 -4.2751 -6.8076 36 1 -0.7025 -2.3477 -6.2950 37 1 0.3086 -3.5483 -5.4559 38 1 -1.9220 -1.8701 -4.1592 39 1 -0.1582 -1.6719 -3.8965 40 1 0.7119 -4.2725 0.3806 41 1 2.8135 -2.5313 1.9260 42 1 2.0982 -4.1313 2.5005 43 1 3.0357 -5.2874 0.4466 44 1 3.7507 -3.6876 -0.1280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = 11.584198 kcal Electronic energy + Delta-G solvation = -23093.633049 eV Core-core repulsion = 20012.350131 eV Total energy + Delta-G solvation = -3081.282919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48079 -39.62065 -37.65966 -35.66455 -34.65505 -33.87418 -32.76548 -29.40976 -27.39713 -26.74597 -24.53157 -23.12505 -22.76556 -22.28547 -21.49142 -20.38949 -20.07685 -18.23806 -17.76322 -16.81582 -16.47992 -16.03016 -15.67113 -15.39694 -15.29678 -15.07258 -14.56207 -14.49410 -14.20418 -13.83298 -13.45811 -13.35477 -12.94539 -12.85419 -12.65314 -12.60419 -12.27615 -12.23358 -12.05912 -12.05589 -11.77447 -11.66058 -11.50653 -11.26145 -11.18907 -10.97145 -10.71391 -10.50587 -10.16649 -9.63002 -8.91311 -8.18942 -5.95902 1.33449 1.41220 1.48733 2.15106 2.33673 2.96573 3.08045 3.13754 3.43014 3.79024 3.86416 3.99130 4.06001 4.12152 4.15447 4.28155 4.31343 4.36162 4.39142 4.43393 4.50438 4.65014 4.74027 4.81532 4.89277 4.95939 5.01145 5.05043 5.10502 5.10932 5.20131 5.23164 5.29765 5.31378 5.42286 5.44687 5.46648 5.50568 5.56617 5.58198 5.66733 5.83078 6.22358 7.06658 7.26469 7.75425 8.44428 8.89576 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.006347 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.490461 B = 4410.338564 C = 5443.496504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.356 4.356 8 H 0.074 0.926 9 N -0.443 5.443 10 C 0.498 3.502 11 O -0.572 6.572 12 C -0.150 4.150 13 C -0.120 4.120 14 H 0.062 0.938 15 C -0.077 4.077 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.129 4.129 22 H 0.128 0.872 23 C 0.048 3.952 24 C -0.172 4.172 25 C -0.178 4.178 26 H 0.258 0.742 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -14.636 -6.424 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.181 4.181 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.092 0.908 9 N -0.163 5.163 10 C 0.287 3.713 11 O -0.453 6.453 12 C -0.171 4.171 13 C -0.139 4.139 14 H 0.080 0.920 15 C -0.114 4.114 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.147 4.147 22 H 0.146 0.854 23 C -0.057 4.057 24 C -0.210 4.210 25 C -0.217 4.217 26 H 0.067 0.933 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.236 -13.997 -6.831 15.624 hybrid contribution 0.279 1.590 0.401 1.664 sum -0.957 -12.407 -6.430 14.007 Atomic orbital electron populations 1.69953 1.07921 1.27386 1.45208 1.25996 0.95448 1.02378 0.94324 0.85313 0.79266 0.79155 0.77083 1.18362 1.22235 1.19804 1.19067 0.95055 0.85468 1.48767 0.90833 1.43016 1.44475 1.07376 1.21473 1.19851 0.81912 0.88819 0.80717 1.90381 1.63766 1.35802 1.55375 1.21584 1.04019 0.97368 0.94123 1.21003 0.97426 0.97728 0.97748 0.91977 1.20458 1.01991 0.91381 0.97573 1.21968 0.95923 1.01611 0.95121 1.21626 0.96995 0.95413 1.01176 1.20316 0.98577 0.95238 1.00778 1.21227 1.00174 0.97396 0.95663 1.22151 1.01227 0.96230 0.94215 1.22826 0.94933 1.00381 0.96584 0.85437 1.21969 0.94979 0.90428 0.98341 1.23115 1.03832 1.02123 0.91916 1.23276 0.96732 1.00428 1.01272 0.93265 0.86500 0.91201 0.91383 0.89698 0.92209 0.92018 0.90427 0.93589 0.92424 0.92540 0.91803 0.93567 0.91727 0.86131 0.90186 0.86503 0.85834 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.93 11.80 21.66 0.26 -53.67 16 2 C 0.02 1.45 4.35 84.93 0.37 1.81 16 3 Si 0.97 46.88 29.60 68.60 2.03 48.91 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.36 -20.13 7.92 84.04 0.67 -19.46 16 8 H 0.07 4.06 7.26 -2.91 -0.02 4.04 16 9 N -0.44 -22.86 2.83 -613.11 -1.74 -24.59 16 10 C 0.50 25.98 6.67 87.66 0.58 26.57 16 11 O -0.57 -34.55 11.28 -3.07 -0.03 -34.59 16 12 C -0.15 -5.92 5.10 -13.11 -0.07 -5.99 16 13 C -0.12 -3.87 3.58 -12.53 -0.04 -3.91 16 14 H 0.06 2.35 7.15 -2.39 -0.02 2.34 16 15 C -0.08 -1.75 5.52 29.73 0.16 -1.59 16 16 C -0.11 -2.07 5.68 31.46 0.18 -1.89 16 17 C -0.11 -2.22 5.38 30.48 0.16 -2.05 16 18 C -0.11 -2.55 4.44 28.79 0.13 -2.42 16 19 C -0.11 -3.12 5.43 29.98 0.16 -2.95 16 20 C -0.10 -3.85 5.58 31.76 0.18 -3.67 16 21 C -0.13 -4.50 4.39 -10.51 -0.05 -4.55 16 22 H 0.13 3.80 5.51 -2.39 -0.01 3.79 16 23 C 0.05 1.91 5.90 44.99 0.27 2.18 16 24 C -0.17 -6.07 9.80 30.60 0.30 -5.77 16 25 C -0.18 -5.84 10.36 30.59 0.32 -5.53 16 26 H 0.26 15.43 8.32 -92.71 -0.77 14.66 16 27 H 0.12 4.14 6.58 -2.39 -0.02 4.13 16 28 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.23 6.33 -2.39 -0.02 1.22 16 32 H 0.06 1.27 5.23 -2.39 -0.01 1.26 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.09 7.84 -2.38 -0.02 1.07 16 35 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.87 4.57 -2.39 -0.01 1.86 16 38 H 0.05 1.77 8.13 -2.38 -0.02 1.75 16 39 H 0.06 3.12 5.27 -2.39 -0.01 3.11 16 40 H 0.12 4.26 6.46 -2.39 -0.02 4.24 16 41 H 0.08 3.25 6.72 -2.39 -0.02 3.24 16 42 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -71.65 325.46 4.82 -66.83 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.99 Total: 26.32 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.32 Total: -29.22 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.48 Total: -78.26 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.03 Total: -34.59 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -71.65 4.82 -66.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.416 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds