Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99920 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47285 * 300.00210 * 3 2 1 6 6 H 1.48503 * 109.47259 * 60.00186 * 3 2 1 7 7 C 1.38951 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 198.33327 * 7 2 1 9 9 N 1.37093 * 119.99904 * 18.33467 * 7 2 1 10 10 C 1.34774 * 120.00278 * 44.25174 * 9 7 2 11 11 O 1.21296 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50855 * 120.00321 * 179.97438 * 10 9 7 13 13 H 1.08609 * 115.38460 * 327.30571 * 12 10 9 14 14 C 1.53413 * 117.01539 * 112.35178 * 12 10 9 15 15 H 1.10405 * 116.09243 * 359.20142 * 14 12 10 16 16 C 1.53061 * 116.77735 * 219.36640 * 14 12 10 17 17 C 1.52735 * 109.79006 * 239.25946 * 16 14 12 18 18 C 1.52216 * 111.11927 * 125.36831 * 17 16 14 19 19 C 1.52858 * 116.59297 * 283.20289 * 18 17 16 20 20 C 1.54410 * 110.70202 * 34.86970 * 19 18 17 21 21 C 1.54560 * 106.07323 * 280.13857 * 20 19 18 22 22 C 1.51597 * 60.15687 * 107.44282 * 14 12 10 23 23 H 1.10936 * 117.47572 * 253.85376 * 22 14 12 24 24 C 1.46503 * 119.99951 * 224.25945 * 9 7 2 25 25 C 1.52994 * 117.49874 * 3.25443 * 24 9 7 26 26 C 1.52999 * 117.49685 * 294.62925 * 24 9 7 27 27 H 0.97004 * 119.99920 * 354.93295 * 1 2 3 28 28 H 1.08703 * 111.68145 * 2.69852 * 16 14 12 29 29 H 1.10278 * 108.90884 * 120.64077 * 16 14 12 30 30 H 1.09805 * 108.41599 * 244.12937 * 17 16 14 31 31 H 1.08370 * 110.53644 * 2.18568 * 17 16 14 32 32 H 1.09213 * 108.17305 * 45.45037 * 18 17 16 33 33 H 1.09354 * 108.01172 * 161.34621 * 18 17 16 34 34 H 1.09234 * 109.40966 * 155.13826 * 19 18 17 35 35 H 1.09137 * 109.47597 * 274.35140 * 19 18 17 36 36 H 1.07923 * 111.11835 * 42.82988 * 20 19 18 37 37 H 1.09918 * 108.89186 * 162.47838 * 20 19 18 38 38 H 1.09276 * 110.12310 * 6.80683 * 21 20 19 39 39 H 1.10407 * 108.29408 * 250.93019 * 21 20 19 40 40 H 1.09008 * 115.54931 * 148.95788 * 24 9 7 41 41 H 1.09000 * 117.49806 * 359.97438 * 25 24 9 42 42 H 1.08998 * 117.50396 * 145.02303 * 25 24 9 43 43 H 1.08997 * 117.49689 * 214.97656 * 26 24 9 44 44 H 1.08994 * 117.49669 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0478 -1.2272 0.2936 9 7 1.3756 -2.3603 -0.3745 10 6 0.5806 -2.3719 -1.4627 11 8 0.4257 -1.3588 -2.1115 12 6 -0.1158 -3.6452 -1.8746 13 1 0.4273 -4.5619 -1.6643 14 6 -1.6442 -3.6762 -1.7466 15 1 -2.1168 -2.7619 -1.3471 16 6 -2.2681 -4.9823 -1.2487 17 6 -3.2370 -5.5252 -2.2973 18 6 -2.8903 -6.9585 -2.6744 19 6 -1.6981 -7.1501 -3.6117 20 6 -0.6070 -6.0945 -3.3300 21 6 -1.0723 -4.7997 -4.0343 22 6 -1.0036 -3.5930 -3.1180 23 1 -1.0504 -2.6188 -3.6465 24 6 1.5630 -3.5841 0.4088 25 6 2.4157 -3.4884 1.6755 26 6 2.9642 -4.1979 0.4359 27 1 -0.4850 0.8368 0.0742 28 1 -1.5099 -5.7211 -1.0020 29 1 -2.8328 -4.7787 -0.3237 30 1 -4.2489 -5.5182 -1.8711 31 1 -3.2415 -4.8904 -3.1756 32 1 -2.6962 -7.5152 -1.7551 33 1 -3.7691 -7.4058 -3.1471 34 1 -1.2772 -8.1473 -3.4645 35 1 -2.0306 -7.0570 -4.6471 36 1 -0.4607 -5.9601 -2.2692 37 1 0.3391 -6.4330 -3.7754 38 1 -2.0818 -4.9300 -4.4319 39 1 -0.4162 -4.6238 -4.9048 40 1 0.7138 -4.2673 0.4238 41 1 2.8376 -2.5150 1.9258 42 1 2.1276 -4.1086 2.5242 43 1 3.0369 -5.2849 0.4691 44 1 3.7467 -3.6909 -0.1288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = 17.248104 kcal Electronic energy + Delta-G solvation = -22932.602343 eV Core-core repulsion = 19851.565030 eV Total energy + Delta-G solvation = -3081.037313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75924 -37.98714 -36.04688 -34.49477 -32.64877 -32.18657 -30.79430 -28.06441 -26.36352 -25.37206 -22.93838 -21.65272 -21.18923 -20.57912 -20.25020 -19.15382 -18.26353 -16.85485 -16.00232 -15.58710 -14.82814 -14.48533 -14.25829 -14.07482 -13.58584 -13.48032 -13.08400 -12.92374 -12.61571 -12.49076 -12.21203 -11.97308 -11.67220 -11.40983 -11.04700 -10.98436 -10.87680 -10.86652 -10.75407 -10.64806 -10.39220 -10.14369 -10.00414 -9.91203 -9.79096 -9.67350 -9.24371 -9.02823 -8.64511 -7.90131 -6.95278 -6.06059 -3.80566 3.31758 3.41728 3.43607 3.87435 4.27513 4.51957 4.74108 4.86774 4.88731 4.93483 5.01684 5.19550 5.23609 5.32972 5.41687 5.45117 5.48102 5.59269 5.65612 5.68449 5.76456 5.83579 5.89754 5.94627 6.00282 6.09847 6.15176 6.20542 6.22058 6.25914 6.29161 6.34482 6.38097 6.47055 6.51586 6.55957 6.69010 6.78259 6.83413 6.84991 6.97783 7.67104 8.34023 9.14038 9.25196 9.74222 10.40530 11.03133 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.005606 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.465239 B = 4993.495081 C = 5542.341673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.348 4.348 8 H 0.076 0.924 9 N -0.427 5.427 10 C 0.512 3.488 11 O -0.535 6.535 12 C -0.171 4.171 13 H 0.108 0.892 14 C -0.125 4.125 15 H 0.105 0.895 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.087 4.087 22 C -0.113 4.113 23 H 0.110 0.890 24 C 0.081 3.919 25 C -0.176 4.176 26 C -0.210 4.210 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -13.742 -2.858 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.474 4.474 8 H 0.094 0.906 9 N -0.147 5.147 10 C 0.300 3.700 11 O -0.413 6.413 12 C -0.192 4.192 13 H 0.126 0.874 14 C -0.143 4.143 15 H 0.123 0.877 16 C -0.123 4.123 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.166 4.166 21 C -0.124 4.124 22 C -0.132 4.132 23 H 0.128 0.872 24 C -0.025 4.025 25 C -0.213 4.213 26 C -0.249 4.249 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.069 -13.071 -3.265 14.074 hybrid contribution 0.434 0.738 0.263 0.896 sum -3.636 -12.332 -3.002 13.203 Atomic orbital electron populations 1.69839 1.06519 1.27101 1.43238 1.25225 0.94808 0.99288 0.94336 0.86184 0.79836 0.82790 0.77424 1.19620 1.20705 1.21250 1.18868 0.94468 0.83941 1.50161 0.90635 1.42666 1.44234 1.06614 1.21192 1.19041 0.82306 0.87602 0.81086 1.90506 1.62693 1.34436 1.53713 1.22654 0.93411 0.99383 1.03790 0.87389 1.22384 0.93438 0.98905 0.99617 0.87670 1.21302 0.98298 0.95166 0.97496 1.21416 0.98231 0.95843 0.99921 1.21377 0.97617 0.96982 0.99323 1.21886 0.95700 0.98587 0.99126 1.22337 0.97294 0.94705 1.02217 1.21451 1.01137 0.92662 0.97161 1.21972 1.02232 0.99641 0.89363 0.87161 1.21625 0.92284 0.91644 0.96957 1.23059 1.04729 1.02426 0.91112 1.23315 1.00041 0.98394 1.03173 0.92794 0.91447 0.92462 0.92986 0.90630 0.92893 0.93212 0.92648 0.92364 0.89929 0.92710 0.91199 0.92754 0.88052 0.87564 0.89909 0.89918 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.98 11.75 55.50 0.65 -24.33 16 2 C 0.07 2.11 4.38 -17.47 -0.08 2.03 16 3 Si 0.91 22.29 29.59 -169.99 -5.03 17.26 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.35 -9.66 7.92 -14.93 -0.12 -9.78 16 8 H 0.08 2.05 7.26 -52.49 -0.38 1.66 16 9 N -0.43 -10.90 2.83 -107.67 -0.31 -11.20 16 10 C 0.51 13.22 6.74 -10.91 -0.07 13.15 16 11 O -0.54 -16.06 13.96 5.54 0.08 -15.98 16 12 C -0.17 -3.37 4.02 -91.55 -0.37 -3.74 16 13 H 0.11 1.93 5.34 -52.15 -0.28 1.65 16 14 C -0.12 -2.20 5.32 -91.08 -0.48 -2.68 16 15 H 0.11 2.19 8.26 -51.13 -0.42 1.77 16 16 C -0.09 -1.18 4.96 -26.84 -0.13 -1.31 16 17 C -0.12 -1.37 5.04 -27.27 -0.14 -1.51 16 18 C -0.12 -1.18 5.35 -27.20 -0.15 -1.32 16 19 C -0.12 -1.18 5.73 -26.06 -0.15 -1.33 16 20 C -0.13 -1.56 5.00 -25.17 -0.13 -1.69 16 21 C -0.09 -1.18 4.78 -26.58 -0.13 -1.31 16 22 C -0.11 -1.99 5.40 -92.07 -0.50 -2.49 16 23 H 0.11 2.23 7.72 -50.82 -0.39 1.84 16 24 C 0.08 1.67 5.61 -67.93 -0.38 1.29 16 25 C -0.18 -3.25 9.80 -26.73 -0.26 -3.51 16 26 C -0.21 -3.69 10.36 -26.73 -0.28 -3.97 16 27 H 0.26 7.52 8.32 -40.82 -0.34 7.18 16 28 H 0.07 0.89 5.67 -52.10 -0.30 0.59 16 29 H 0.06 0.78 8.25 -51.20 -0.42 0.36 16 30 H 0.05 0.57 8.21 -51.47 -0.42 0.15 16 31 H 0.08 0.94 5.05 -52.28 -0.26 0.68 16 32 H 0.05 0.53 7.99 -51.81 -0.41 0.11 16 33 H 0.05 0.46 8.17 -51.73 -0.42 0.03 16 34 H 0.05 0.51 8.16 -51.80 -0.42 0.09 16 35 H 0.06 0.56 7.69 -51.85 -0.40 0.16 16 36 H 0.08 1.08 3.20 -52.53 -0.17 0.91 16 37 H 0.05 0.64 8.22 -51.41 -0.42 0.22 16 38 H 0.07 0.86 5.53 -51.77 -0.29 0.58 16 39 H 0.05 0.73 8.26 -51.12 -0.42 0.31 16 40 H 0.10 1.90 7.09 -51.92 -0.37 1.53 16 41 H 0.11 2.17 6.72 -51.93 -0.35 1.82 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -32.03 329.38 -9.95 -41.99 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.96 Total: 5.48 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.36 Total: -18.17 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.35 Total: -35.53 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.08 Total: -15.98 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.03 -9.95 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.236 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds