Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99920 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47285 * 300.00210 * 3 2 1 6 6 H 1.48503 * 109.47259 * 60.00186 * 3 2 1 7 7 C 1.38951 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 198.33327 * 7 2 1 9 9 N 1.37093 * 119.99904 * 18.33467 * 7 2 1 10 10 C 1.34774 * 120.00278 * 44.25174 * 9 7 2 11 11 O 1.21296 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50855 * 120.00321 * 179.97438 * 10 9 7 13 13 H 1.08609 * 115.38460 * 327.30571 * 12 10 9 14 14 C 1.53413 * 117.01539 * 112.35178 * 12 10 9 15 15 H 1.10405 * 116.09243 * 359.20142 * 14 12 10 16 16 C 1.53061 * 116.77735 * 219.36640 * 14 12 10 17 17 C 1.52735 * 109.79006 * 239.25946 * 16 14 12 18 18 C 1.52216 * 111.11927 * 125.36831 * 17 16 14 19 19 C 1.52858 * 116.59297 * 283.20289 * 18 17 16 20 20 C 1.54410 * 110.70202 * 34.86970 * 19 18 17 21 21 C 1.54560 * 106.07323 * 280.13857 * 20 19 18 22 22 C 1.51597 * 60.15687 * 107.44282 * 14 12 10 23 23 H 1.10936 * 117.47572 * 253.85376 * 22 14 12 24 24 C 1.46503 * 119.99951 * 224.25945 * 9 7 2 25 25 C 1.52994 * 117.49874 * 3.25443 * 24 9 7 26 26 C 1.52999 * 117.49685 * 294.62925 * 24 9 7 27 27 H 0.97004 * 119.99920 * 354.93295 * 1 2 3 28 28 H 1.08703 * 111.68145 * 2.69852 * 16 14 12 29 29 H 1.10278 * 108.90884 * 120.64077 * 16 14 12 30 30 H 1.09805 * 108.41599 * 244.12937 * 17 16 14 31 31 H 1.08370 * 110.53644 * 2.18568 * 17 16 14 32 32 H 1.09213 * 108.17305 * 45.45037 * 18 17 16 33 33 H 1.09354 * 108.01172 * 161.34621 * 18 17 16 34 34 H 1.09234 * 109.40966 * 155.13826 * 19 18 17 35 35 H 1.09137 * 109.47597 * 274.35140 * 19 18 17 36 36 H 1.07923 * 111.11835 * 42.82988 * 20 19 18 37 37 H 1.09918 * 108.89186 * 162.47838 * 20 19 18 38 38 H 1.09276 * 110.12310 * 6.80683 * 21 20 19 39 39 H 1.10407 * 108.29408 * 250.93019 * 21 20 19 40 40 H 1.09008 * 115.54931 * 148.95788 * 24 9 7 41 41 H 1.09000 * 117.49806 * 359.97438 * 25 24 9 42 42 H 1.08998 * 117.50396 * 145.02303 * 25 24 9 43 43 H 1.08997 * 117.49689 * 214.97656 * 26 24 9 44 44 H 1.08994 * 117.49669 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0478 -1.2272 0.2936 9 7 1.3756 -2.3603 -0.3745 10 6 0.5806 -2.3719 -1.4627 11 8 0.4257 -1.3588 -2.1115 12 6 -0.1158 -3.6452 -1.8746 13 1 0.4273 -4.5619 -1.6643 14 6 -1.6442 -3.6762 -1.7466 15 1 -2.1168 -2.7619 -1.3471 16 6 -2.2681 -4.9823 -1.2487 17 6 -3.2370 -5.5252 -2.2973 18 6 -2.8903 -6.9585 -2.6744 19 6 -1.6981 -7.1501 -3.6117 20 6 -0.6070 -6.0945 -3.3300 21 6 -1.0723 -4.7997 -4.0343 22 6 -1.0036 -3.5930 -3.1180 23 1 -1.0504 -2.6188 -3.6465 24 6 1.5630 -3.5841 0.4088 25 6 2.4157 -3.4884 1.6755 26 6 2.9642 -4.1979 0.4359 27 1 -0.4850 0.8368 0.0742 28 1 -1.5099 -5.7211 -1.0020 29 1 -2.8328 -4.7787 -0.3237 30 1 -4.2489 -5.5182 -1.8711 31 1 -3.2415 -4.8904 -3.1756 32 1 -2.6962 -7.5152 -1.7551 33 1 -3.7691 -7.4058 -3.1471 34 1 -1.2772 -8.1473 -3.4645 35 1 -2.0306 -7.0570 -4.6471 36 1 -0.4607 -5.9601 -2.2692 37 1 0.3391 -6.4330 -3.7754 38 1 -2.0818 -4.9300 -4.4319 39 1 -0.4162 -4.6238 -4.9048 40 1 0.7138 -4.2673 0.4238 41 1 2.8376 -2.5150 1.9258 42 1 2.1276 -4.1086 2.5242 43 1 3.0369 -5.2849 0.4691 44 1 3.7467 -3.6909 -0.1288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -0.272112 kcal Electronic energy + Delta-G solvation = -22933.362077 eV Core-core repulsion = 19851.565030 eV Total energy + Delta-G solvation = -3081.797047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23268 -39.59730 -37.72377 -35.77537 -34.66010 -33.21421 -32.78824 -29.28677 -27.47175 -27.23455 -24.50349 -23.10191 -22.78933 -21.92593 -21.28973 -20.53724 -19.86726 -18.51054 -17.84855 -16.96947 -16.60188 -16.08029 -15.76681 -15.25539 -15.10490 -14.96876 -14.62564 -14.11387 -14.00407 -13.77040 -13.61365 -13.18274 -13.05809 -12.96750 -12.79663 -12.71944 -12.61618 -12.25032 -12.09202 -12.06379 -11.79487 -11.65707 -11.32674 -11.22972 -11.03857 -10.85875 -10.76312 -10.64954 -10.31168 -9.87723 -8.96853 -8.21237 -5.99176 1.31858 1.39806 1.47609 2.12580 2.31420 2.91669 3.10073 3.15505 3.43062 3.76388 3.86921 3.95508 4.02144 4.06066 4.15418 4.19201 4.26324 4.31851 4.35945 4.40389 4.51927 4.53877 4.61533 4.87047 4.88803 4.90740 4.94102 5.00375 5.06656 5.13321 5.18194 5.26394 5.28676 5.34302 5.35777 5.40274 5.45369 5.46808 5.49211 5.52425 5.67936 5.72435 6.19978 7.03934 7.23109 7.71920 8.40163 8.87685 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.005606 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.465239 B = 4993.495081 C = 5542.341673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.356 4.356 8 H 0.076 0.924 9 N -0.442 5.442 10 C 0.493 3.507 11 O -0.595 6.595 12 C -0.176 4.176 13 H 0.135 0.865 14 C -0.110 4.110 15 H 0.060 0.940 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.102 4.102 23 H 0.071 0.929 24 C 0.048 3.952 25 C -0.172 4.172 26 C -0.180 4.180 27 H 0.257 0.743 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 -17.282 -2.560 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.186 4.186 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.094 0.906 9 N -0.162 5.162 10 C 0.283 3.717 11 O -0.478 6.478 12 C -0.197 4.197 13 H 0.152 0.848 14 C -0.129 4.129 15 H 0.078 0.922 16 C -0.115 4.115 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.118 4.118 22 C -0.121 4.121 23 H 0.089 0.911 24 C -0.057 4.057 25 C -0.209 4.209 26 C -0.219 4.219 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.780 -16.651 -2.926 17.323 hybrid contribution 0.398 1.845 0.179 1.896 sum -3.382 -14.806 -2.747 15.434 Atomic orbital electron populations 1.69960 1.08039 1.27341 1.45409 1.26073 0.95532 1.02642 0.94325 0.85270 0.79320 0.78872 0.77104 1.18092 1.22312 1.19632 1.19124 0.94715 0.85359 1.49187 0.90601 1.42915 1.43803 1.07716 1.21765 1.20060 0.82088 0.88946 0.80608 1.90450 1.64704 1.37055 1.55569 1.22505 0.94214 0.97190 1.05832 0.84783 1.22353 0.91658 0.99431 0.99446 0.92167 1.21310 0.98942 0.93082 0.98123 1.21375 0.98088 0.96897 0.98820 1.21349 0.98352 0.95487 0.99943 1.21869 0.94869 0.98532 0.99575 1.22303 0.98547 0.94125 1.01447 1.21484 1.02424 0.91652 0.96267 1.21969 1.00787 0.99918 0.89456 0.91116 1.21928 0.94804 0.90538 0.98442 1.23119 1.03657 1.02106 0.92039 1.23330 0.96768 1.00549 1.01216 0.93345 0.89830 0.92390 0.91965 0.91584 0.92078 0.91628 0.90985 0.91602 0.90676 0.91969 0.89455 0.92606 0.86075 0.90199 0.86388 0.85526 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.04 11.75 21.66 0.25 -54.78 16 2 C 0.02 1.19 4.38 84.93 0.37 1.56 16 3 Si 0.97 47.39 29.59 68.60 2.03 49.42 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.36 -20.43 7.92 84.04 0.67 -19.77 16 8 H 0.08 4.21 7.26 -2.91 -0.02 4.19 16 9 N -0.44 -23.18 2.83 -612.94 -1.74 -24.91 16 10 C 0.49 26.60 6.74 87.71 0.59 27.19 16 11 O -0.60 -38.08 13.96 -3.08 -0.04 -38.13 16 12 C -0.18 -7.05 4.02 -11.39 -0.05 -7.10 16 13 H 0.13 4.58 5.34 -2.59 -0.01 4.57 16 14 C -0.11 -3.96 5.32 -11.09 -0.06 -4.02 16 15 H 0.06 2.70 8.26 -1.63 -0.01 2.69 16 16 C -0.08 -2.00 4.96 30.53 0.15 -1.85 16 17 C -0.11 -2.38 5.04 30.25 0.15 -2.23 16 18 C -0.11 -1.84 5.35 30.29 0.16 -1.68 16 19 C -0.11 -1.78 5.73 31.03 0.18 -1.60 16 20 C -0.13 -2.67 5.00 31.60 0.16 -2.52 16 21 C -0.08 -2.09 4.78 30.69 0.15 -1.94 16 22 C -0.10 -3.69 5.40 -11.73 -0.06 -3.75 16 23 H 0.07 3.10 7.72 -1.34 -0.01 3.09 16 24 C 0.05 1.91 5.61 44.99 0.25 2.16 16 25 C -0.17 -6.03 9.80 30.59 0.30 -5.73 16 26 C -0.18 -5.82 10.36 30.60 0.32 -5.51 16 27 H 0.26 15.63 8.32 -92.71 -0.77 14.86 16 28 H 0.08 1.93 5.67 -2.54 -0.01 1.91 16 29 H 0.06 1.49 8.25 -1.70 -0.01 1.48 16 30 H 0.06 1.19 8.21 -1.96 -0.02 1.17 16 31 H 0.07 1.51 5.05 -2.72 -0.01 1.50 16 32 H 0.06 0.92 7.99 -2.27 -0.02 0.90 16 33 H 0.06 0.90 8.17 -2.20 -0.02 0.88 16 34 H 0.07 0.97 8.16 -2.26 -0.02 0.95 16 35 H 0.07 0.98 7.69 -2.31 -0.02 0.96 16 36 H 0.07 1.70 3.20 -2.95 -0.01 1.69 16 37 H 0.06 1.24 8.22 -1.90 -0.02 1.22 16 38 H 0.09 1.96 5.53 -2.24 -0.01 1.95 16 39 H 0.06 1.42 8.26 -1.63 -0.01 1.41 16 40 H 0.12 4.30 7.09 -2.38 -0.02 4.28 16 41 H 0.08 3.25 6.72 -2.39 -0.02 3.23 16 42 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -75.35 329.38 4.80 -70.55 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.02 Total: 24.62 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.28 Total: -26.76 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.48 Total: -79.70 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.04 Total: -38.13 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.35 4.80 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.273 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds