Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34950 * 126.03814 * 2 1 4 4 C 1.35311 * 107.74867 * 180.02562 * 3 2 1 5 5 C 1.39870 * 107.91994 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.89732 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47064 * 125.00016 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.53627 * 108.54183 * 126.37295 * 10 9 7 12 12 C 1.53040 * 109.24108 * 54.85576 * 11 10 9 13 13 C 1.53042 * 109.53871 * 298.50936 * 12 11 10 14 14 H 1.09000 * 109.50220 * 301.42045 * 13 12 11 15 15 C 1.50698 * 109.49928 * 181.31422 * 13 12 11 16 16 H 1.08000 * 119.99906 * 0.17167 * 15 13 12 17 17 C 1.37879 * 119.99904 * 180.16396 * 15 13 12 18 18 N 1.31518 * 119.99803 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00279 * 0.02562 * 17 15 13 20 20 H 1.48496 * 109.47012 * 89.99747 * 19 17 15 21 21 H 1.48497 * 109.47371 * 210.00067 * 19 17 15 22 22 H 1.48498 * 109.46758 * 330.00112 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 N 1.30837 * 108.20220 * 0.26104 * 5 4 3 25 25 H 1.09002 * 109.46851 * 90.00390 * 1 2 3 26 26 H 1.09004 * 109.47013 * 210.00300 * 1 2 3 27 27 H 1.08997 * 109.47501 * 330.00399 * 1 2 3 28 28 H 1.08000 * 126.12269 * 0.02649 * 3 2 1 29 29 H 1.08000 * 126.04262 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47060 * 244.99979 * 6 5 4 31 31 H 1.09001 * 109.47380 * 5.00067 * 6 5 4 32 32 H 1.09005 * 109.58858 * 246.20434 * 10 9 7 33 33 H 1.08995 * 109.58867 * 6.63230 * 10 9 7 34 34 H 1.08999 * 109.63425 * 294.86802 * 11 10 9 35 35 H 1.08997 * 109.46146 * 174.73964 * 11 10 9 36 36 H 1.08995 * 109.46070 * 178.49571 * 12 11 10 37 37 H 1.08998 * 109.45156 * 58.52626 * 12 11 10 38 38 H 0.96997 * 119.99723 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58920 * 353.36599 * 23 9 7 40 40 H 1.08997 * 109.58981 * 113.79581 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6235 -0.0003 7 6 4.6727 -2.5776 1.1638 8 8 3.7248 -2.5372 1.9192 9 7 5.6578 -3.4749 1.3660 10 6 6.8099 -3.5393 0.4565 11 6 8.0963 -3.4298 1.2891 12 6 8.0897 -4.5111 2.3721 13 6 6.8941 -4.2959 3.3029 14 1 6.9562 -3.3046 3.7518 15 6 6.9066 -5.3418 4.3878 16 1 7.6906 -6.0842 4.4131 17 6 5.9174 -5.3507 5.3482 18 7 5.9286 -6.2632 6.2953 19 14 4.5611 -4.0669 5.3042 20 1 3.4281 -4.5716 4.4877 21 1 4.0923 -3.7944 6.6866 22 1 5.0849 -2.8141 4.7032 23 6 5.5965 -4.4119 2.4960 24 7 2.2892 -1.1327 -0.0053 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9281 2.1193 0.0004 29 1 4.4211 1.2963 -0.0003 30 1 4.7857 -2.1888 -0.9316 31 1 5.6483 -1.0131 0.0892 32 1 6.7988 -4.4877 -0.0809 33 1 6.7614 -2.7140 -0.2538 34 1 8.1471 -2.4466 1.7570 35 1 8.9614 -3.5694 0.6410 36 1 9.0132 -4.4537 2.9482 37 1 8.0138 -5.4927 1.9045 38 1 5.2324 -6.2697 6.9707 39 1 4.7471 -4.1625 3.1319 40 1 5.4887 -5.4297 2.1213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = 46.678861 kcal Electronic energy + Delta-G solvation = -21858.335926 eV Core-core repulsion = 18675.034483 eV Total energy + Delta-G solvation = -3183.301443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18018 -39.54062 -36.88557 -33.89166 -33.33980 -31.89377 -30.83116 -30.20231 -29.49980 -26.10080 -25.13662 -24.23918 -21.97547 -21.17273 -20.48426 -19.32540 -18.27995 -17.04690 -16.85013 -16.59613 -15.51695 -15.30377 -14.98783 -14.40073 -13.98670 -13.87444 -13.66783 -13.57100 -13.02952 -12.91600 -12.73037 -12.58432 -12.47519 -12.35428 -12.07800 -11.77188 -11.25208 -11.02045 -10.57061 -10.50459 -10.33895 -10.05283 -9.72478 -9.46855 -9.26174 -9.10945 -8.98524 -8.56334 -8.53095 -7.96514 -6.06879 -4.08096 1.92116 2.51142 2.76360 3.11661 3.42680 3.48905 3.60741 3.63446 4.40238 4.46871 4.69088 4.82490 4.94704 4.99062 5.17002 5.23355 5.26443 5.28730 5.37701 5.42982 5.56127 5.64877 5.78919 5.86069 6.00453 6.05628 6.14766 6.24626 6.44596 6.59099 6.62766 6.70916 6.81218 6.96177 7.00378 7.20055 7.49120 7.76648 7.78914 7.96636 8.50803 8.70923 8.96362 9.55362 11.05092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.005431 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.207211 B = 5154.630816 C = 6209.092278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.047 3.953 4 C -0.266 4.266 5 C 0.086 3.914 6 C -0.058 4.058 7 C 0.508 3.492 8 O -0.530 6.530 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.137 4.137 12 C -0.100 4.100 13 C 0.004 3.996 14 H 0.030 0.970 15 C -0.516 4.516 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.880 3.120 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.264 1.264 23 C 0.104 3.896 24 N -0.262 5.262 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 14.377 -17.076 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.099 4.099 4 C -0.296 4.296 5 C -0.081 4.081 6 C -0.100 4.100 7 C 0.294 3.706 8 O -0.406 6.406 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.015 4.015 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.710 3.290 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.188 1.188 23 C -0.017 4.017 24 N -0.084 5.084 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.165 0.835 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.534 13.330 -16.505 21.926 hybrid contribution -0.333 1.392 0.127 1.437 sum -5.867 14.722 -16.378 22.790 Atomic orbital electron populations 1.21807 0.74495 1.04516 1.02993 1.48547 1.06601 1.03943 1.57134 1.22449 0.91178 0.93369 1.02899 1.21338 0.97092 0.94075 1.17056 1.21601 0.92806 0.93376 1.00341 1.20091 0.94693 0.96170 0.99058 1.20312 0.82619 0.81334 0.86302 1.90724 1.32538 1.70380 1.46992 1.48404 1.20936 1.35618 1.29513 1.21801 0.86046 1.01729 0.91898 1.22065 0.96054 1.00876 0.98483 1.21435 0.99658 0.96940 0.95778 1.19496 0.90118 0.98302 0.93603 0.95206 1.20969 1.12059 1.13990 1.08383 0.90475 1.25030 0.97636 0.95220 0.95006 1.69895 1.34376 1.34206 1.14997 0.86978 0.82795 0.83224 0.75970 1.20001 1.22463 1.18847 1.22556 1.01773 0.90931 0.86417 1.77468 1.01292 1.06968 1.22663 0.90972 0.89260 0.89686 0.81138 0.83547 0.87603 0.87203 0.91475 0.90615 0.91958 0.91666 0.92279 0.92529 0.92565 0.90425 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.47 59.85 0.69 1.58 16 2 N -0.38 -5.10 4.01 -68.16 -0.27 -5.38 16 3 C 0.05 0.53 11.49 -17.22 -0.20 0.33 16 4 C -0.27 -3.41 10.72 -40.01 -0.43 -3.84 16 5 C 0.09 1.36 6.01 -82.40 -0.50 0.86 16 6 C -0.06 -0.82 4.62 -29.03 -0.13 -0.95 16 7 C 0.51 9.91 7.69 -10.98 -0.08 9.83 16 8 O -0.53 -13.01 14.98 5.56 0.08 -12.93 16 9 N -0.61 -11.59 2.97 -172.48 -0.51 -12.10 16 10 C 0.11 1.49 6.37 -3.48 -0.02 1.47 16 11 C -0.14 -1.97 6.10 -26.39 -0.16 -2.13 16 12 C -0.10 -1.89 5.10 -26.69 -0.14 -2.03 16 13 C 0.00 0.10 1.84 -91.63 -0.17 -0.06 16 14 H 0.03 0.75 7.21 -51.93 -0.37 0.38 16 15 C -0.52 -14.58 9.15 -34.44 -0.31 -14.90 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.19 5.45 -17.82 -0.10 2.09 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 19 Si 0.88 24.18 24.32 -169.99 -4.13 20.05 16 20 H -0.27 -7.68 6.92 56.52 0.39 -7.29 16 21 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 22 H -0.26 -7.28 6.53 56.52 0.37 -6.91 16 23 C 0.10 2.41 5.11 -3.69 -0.02 2.39 16 24 N -0.26 -4.57 11.94 33.67 0.40 -4.17 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.11 1.19 7.68 -51.93 -0.40 0.79 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.08 2.05 2.32 -51.93 -0.12 1.93 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -38.20 320.61 -6.26 -44.47 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.86 Total: -2.18 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.57 Total: -5.35 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.39 Total: -48.89 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.13 Total: 20.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -38.20 -6.26 -44.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.145 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds