Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34950 * 126.03814 * 2 1 4 4 C 1.35311 * 107.74867 * 180.02562 * 3 2 1 5 5 C 1.39870 * 107.91994 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.89732 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47064 * 125.00016 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.53627 * 108.54183 * 126.37295 * 10 9 7 12 12 C 1.53040 * 109.24108 * 54.85576 * 11 10 9 13 13 C 1.53042 * 109.53871 * 298.50936 * 12 11 10 14 14 H 1.09000 * 109.50220 * 301.42045 * 13 12 11 15 15 C 1.50698 * 109.49928 * 181.31422 * 13 12 11 16 16 H 1.08000 * 119.99906 * 0.17167 * 15 13 12 17 17 C 1.37879 * 119.99904 * 180.16396 * 15 13 12 18 18 N 1.31518 * 119.99803 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00279 * 0.02562 * 17 15 13 20 20 H 1.48496 * 109.47012 * 89.99747 * 19 17 15 21 21 H 1.48497 * 109.47371 * 210.00067 * 19 17 15 22 22 H 1.48498 * 109.46758 * 330.00112 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 N 1.30837 * 108.20220 * 0.26104 * 5 4 3 25 25 H 1.09002 * 109.46851 * 90.00390 * 1 2 3 26 26 H 1.09004 * 109.47013 * 210.00300 * 1 2 3 27 27 H 1.08997 * 109.47501 * 330.00399 * 1 2 3 28 28 H 1.08000 * 126.12269 * 0.02649 * 3 2 1 29 29 H 1.08000 * 126.04262 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47060 * 244.99979 * 6 5 4 31 31 H 1.09001 * 109.47380 * 5.00067 * 6 5 4 32 32 H 1.09005 * 109.58858 * 246.20434 * 10 9 7 33 33 H 1.08995 * 109.58867 * 6.63230 * 10 9 7 34 34 H 1.08999 * 109.63425 * 294.86802 * 11 10 9 35 35 H 1.08997 * 109.46146 * 174.73964 * 11 10 9 36 36 H 1.08995 * 109.46070 * 178.49571 * 12 11 10 37 37 H 1.08998 * 109.45156 * 58.52626 * 12 11 10 38 38 H 0.96997 * 119.99723 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58920 * 353.36599 * 23 9 7 40 40 H 1.08997 * 109.58981 * 113.79581 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6235 -0.0003 7 6 4.6727 -2.5776 1.1638 8 8 3.7248 -2.5372 1.9192 9 7 5.6578 -3.4749 1.3660 10 6 6.8099 -3.5393 0.4565 11 6 8.0963 -3.4298 1.2891 12 6 8.0897 -4.5111 2.3721 13 6 6.8941 -4.2959 3.3029 14 1 6.9562 -3.3046 3.7518 15 6 6.9066 -5.3418 4.3878 16 1 7.6906 -6.0842 4.4131 17 6 5.9174 -5.3507 5.3482 18 7 5.9286 -6.2632 6.2953 19 14 4.5611 -4.0669 5.3042 20 1 3.4281 -4.5716 4.4877 21 1 4.0923 -3.7944 6.6866 22 1 5.0849 -2.8141 4.7032 23 6 5.5965 -4.4119 2.4960 24 7 2.2892 -1.1327 -0.0053 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9281 2.1193 0.0004 29 1 4.4211 1.2963 -0.0003 30 1 4.7857 -2.1888 -0.9316 31 1 5.6483 -1.0131 0.0892 32 1 6.7988 -4.4877 -0.0809 33 1 6.7614 -2.7140 -0.2538 34 1 8.1471 -2.4466 1.7570 35 1 8.9614 -3.5694 0.6410 36 1 9.0132 -4.4537 2.9482 37 1 8.0138 -5.4927 1.9045 38 1 5.2324 -6.2697 6.9707 39 1 4.7471 -4.1625 3.1319 40 1 5.4887 -5.4297 2.1213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = 18.357805 kcal Electronic energy + Delta-G solvation = -21859.564019 eV Core-core repulsion = 18675.034483 eV Total energy + Delta-G solvation = -3184.529536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14261 -40.99214 -38.45336 -35.37567 -34.77161 -33.63123 -32.30501 -31.29260 -30.60731 -27.29660 -26.80470 -25.68351 -23.51189 -22.06844 -21.84194 -20.74420 -19.61839 -18.91783 -18.30926 -17.80234 -16.85875 -16.51449 -16.37538 -16.13560 -15.39159 -15.09615 -15.02826 -14.77936 -14.62515 -14.48006 -13.94302 -13.79034 -13.60792 -13.44365 -13.24966 -13.11110 -12.92351 -12.80454 -12.34142 -12.11848 -11.76411 -11.58225 -11.49071 -11.24273 -11.04591 -10.83461 -10.71770 -10.18248 -9.52844 -9.44511 -8.42738 -6.43098 1.00847 1.17263 1.24293 1.37509 1.66698 1.71940 1.77317 2.15740 2.25750 2.95319 3.49513 3.72287 3.90451 4.06188 4.15444 4.19508 4.21647 4.37835 4.39956 4.47364 4.48762 4.56801 4.63295 4.66620 4.80086 4.82459 4.89174 4.95052 5.01667 5.13268 5.21166 5.27470 5.43809 5.55022 5.65219 5.69220 5.73173 6.23224 6.25022 6.55693 6.66434 6.83029 7.22458 7.26179 8.73538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.005431 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.207211 B = 5154.630816 C = 6209.092278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.389 5.389 3 C 0.055 3.945 4 C -0.283 4.283 5 C 0.063 3.937 6 C -0.047 4.047 7 C 0.499 3.501 8 O -0.592 6.592 9 N -0.612 5.612 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.099 4.099 13 C 0.004 3.996 14 H 0.014 0.986 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.032 3.968 18 N -0.937 5.937 19 Si 0.939 3.061 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.109 3.891 24 N -0.327 5.327 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.217 0.783 29 H 0.173 0.827 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.042 0.958 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 17.198 -20.121 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.172 5.172 3 C -0.091 4.091 4 C -0.312 4.312 5 C -0.104 4.104 6 C -0.087 4.087 7 C 0.288 3.712 8 O -0.472 6.472 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.015 4.015 14 H 0.032 0.968 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.167 4.167 18 N -0.577 5.577 19 Si 0.769 3.231 20 H -0.218 1.218 21 H -0.221 1.221 22 H -0.195 1.195 23 C -0.014 4.014 24 N -0.150 5.150 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.233 0.767 29 H 0.191 0.809 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.559 16.158 -19.590 25.800 hybrid contribution -0.630 0.509 1.041 1.319 sum -5.189 16.667 -18.549 25.471 Atomic orbital electron populations 1.22119 0.72586 1.05261 1.04571 1.48912 1.07921 1.03707 1.56662 1.23227 0.90706 0.94698 1.00475 1.21756 0.98795 0.93170 1.17465 1.22033 0.92770 0.95023 1.00549 1.20199 0.95899 0.95403 0.97247 1.21367 0.81415 0.81429 0.87015 1.90693 1.34952 1.72043 1.49515 1.48469 1.22693 1.34514 1.28827 1.22265 0.83415 1.04793 0.91554 1.22030 0.98188 0.98744 0.97550 1.21389 0.96823 0.99110 0.96352 1.19436 0.93022 0.95526 0.93536 0.96821 1.21381 1.10334 1.13894 1.09220 0.92873 1.25558 0.99393 0.96466 0.95285 1.69978 1.35571 1.35965 1.16208 0.86068 0.80462 0.81286 0.75240 1.21837 1.22124 1.19491 1.22032 0.99671 0.91828 0.87866 1.77359 1.02791 1.09772 1.25078 0.88974 0.91042 0.86409 0.76660 0.80933 0.84667 0.83285 0.89882 0.85695 0.91946 0.87204 0.92588 0.92388 0.92392 0.93969 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 11.47 127.77 1.47 2.97 16 2 N -0.39 -9.88 4.01 -369.57 -1.48 -11.36 16 3 C 0.05 1.08 11.49 83.54 0.96 2.04 16 4 C -0.28 -6.40 10.72 21.99 0.24 -6.17 16 5 C 0.06 1.85 6.01 43.10 0.26 2.11 16 6 C -0.05 -1.15 4.62 29.10 0.13 -1.02 16 7 C 0.50 18.85 7.69 87.66 0.67 19.52 16 8 O -0.59 -29.63 14.98 -3.02 -0.05 -29.67 16 9 N -0.61 -22.15 2.97 -817.98 -2.43 -24.57 16 10 C 0.10 2.31 6.37 86.51 0.55 2.86 16 11 C -0.13 -3.10 6.10 30.82 0.19 -2.91 16 12 C -0.10 -3.55 5.10 30.62 0.16 -3.39 16 13 C 0.00 0.21 1.84 -11.45 -0.02 0.19 16 14 H 0.01 0.70 7.21 -2.39 -0.02 0.68 16 15 C -0.51 -29.60 9.15 25.60 0.23 -29.37 16 16 H 0.05 3.28 7.99 -2.91 -0.02 3.26 16 17 C 0.03 1.94 5.45 84.65 0.46 2.40 16 18 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 19 Si 0.94 52.75 24.32 68.60 1.67 54.42 16 20 H -0.29 -16.96 6.92 99.48 0.69 -16.27 16 21 H -0.29 -16.06 7.11 99.48 0.71 -15.35 16 22 H -0.27 -15.19 6.53 99.48 0.65 -14.54 16 23 C 0.11 5.09 5.11 86.38 0.44 5.53 16 24 N -0.33 -11.27 11.94 -47.38 -0.57 -11.83 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.22 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.14 2.50 7.93 -2.39 -0.02 2.48 16 31 H 0.15 2.43 7.68 -2.39 -0.02 2.41 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.13 1.71 5.93 -2.39 -0.01 1.70 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 39 H 0.04 2.29 2.32 -2.39 -0.01 2.29 16 40 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -90.45 320.61 4.14 -86.31 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 0.96 Total: 2.03 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 5.74 Total: -5.23 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.17 Total: -107.86 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 1.67 Total: 54.42 kcal Total: -90.45 4.14 -86.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.669 kcal (2) G-P(sol) polarization free energy of solvation -90.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds