Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00239 * 2 1 4 4 H 1.48501 * 109.46983 * 269.99661 * 3 2 1 5 5 H 1.48494 * 109.47305 * 29.99763 * 3 2 1 6 6 H 1.48506 * 109.47282 * 150.00286 * 3 2 1 7 7 C 1.37884 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00325 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99772 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49756 * 60.06396 * 9 7 2 11 11 C 1.53043 * 109.49542 * 300.00093 * 9 7 2 12 12 C 1.53046 * 109.53700 * 178.65056 * 11 9 7 13 13 C 1.53195 * 109.30793 * 61.36640 * 12 11 9 14 14 N 1.46923 * 108.77575 * 305.36150 * 13 12 11 15 15 C 1.34778 * 120.63136 * 233.60857 * 14 13 12 16 16 O 1.21285 * 119.99524 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00059 * 0.02562 * 15 14 13 18 18 C 1.53000 * 109.47011 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.35965 * 304.72686 * 18 17 15 20 20 C 1.50074 * 109.35477 * 64.31538 * 18 17 15 21 21 C 1.29443 * 124.07510 * 137.33701 * 20 18 17 22 22 C 1.50064 * 124.07326 * 359.53180 * 21 20 18 23 23 C 1.53022 * 110.15333 * 17.12684 * 22 21 20 24 24 C 1.53025 * 109.35770 * 185.00015 * 18 17 15 25 25 C 1.46931 * 118.73730 * 53.61542 * 14 13 12 26 26 H 0.96998 * 119.99368 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46060 * 58.63528 * 11 9 7 28 28 H 1.08998 * 109.45045 * 298.66512 * 11 9 7 29 29 H 1.08990 * 109.49711 * 181.31709 * 12 11 9 30 30 H 1.08999 * 109.49785 * 301.41955 * 12 11 9 31 31 H 1.08996 * 109.58476 * 65.15647 * 13 12 11 32 32 H 1.09006 * 109.58092 * 185.57719 * 13 12 11 33 33 H 1.08994 * 109.47009 * 300.00240 * 17 15 14 34 34 H 1.09006 * 109.46687 * 60.00343 * 17 15 14 35 35 H 1.07995 * 117.96196 * 317.30867 * 20 18 17 36 36 H 1.08001 * 117.96299 * 179.54600 * 21 20 18 37 37 H 1.09004 * 109.35893 * 256.92161 * 22 21 20 38 38 H 1.09001 * 109.35771 * 137.34137 * 22 21 20 39 39 H 1.08998 * 109.64580 * 190.87970 * 23 22 21 40 40 H 1.09009 * 109.81484 * 70.34879 * 23 22 21 41 41 H 1.08993 * 109.64008 * 310.04356 * 24 18 17 42 42 H 1.09001 * 109.63714 * 70.67544 * 24 18 17 43 43 H 1.09001 * 109.58511 * 186.59744 * 25 14 13 44 44 H 1.09004 * 109.58611 * 66.17544 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8750 -0.6812 0.8916 11 6 4.0228 -0.4731 -1.2482 12 6 5.5529 -0.4431 -1.2317 13 6 6.0879 -1.8785 -1.2489 14 7 5.4868 -2.6206 -0.1324 15 6 6.2631 -3.2731 0.7555 16 8 5.7547 -3.8824 1.6726 17 6 7.7626 -3.2454 0.6086 18 6 8.4007 -4.0571 1.7376 19 1 8.0537 -3.6754 2.6978 20 6 7.9993 -5.4969 1.6033 21 6 8.8097 -6.4937 1.7624 22 6 10.2661 -6.3485 2.0936 23 6 10.5485 -4.9411 2.6236 24 6 9.9233 -3.9250 1.6595 25 6 4.0234 -2.6380 -0.0021 26 1 -0.4849 0.8401 -0.0004 27 1 3.6398 0.5473 -1.2609 28 1 3.6795 -1.0009 -2.1380 29 1 5.9157 0.0909 -2.1098 30 1 5.8971 0.0627 -0.3297 31 1 5.8209 -2.3566 -2.1914 32 1 7.1721 -1.8656 -1.1375 33 1 8.0416 -3.6773 -0.3525 34 1 8.1137 -2.2146 0.6594 35 1 6.9701 -5.7150 1.3592 36 1 8.4130 -7.4919 1.6497 37 1 10.8598 -6.5223 1.1960 38 1 10.5390 -7.0819 2.8523 39 1 11.6250 -4.7794 2.6788 40 1 10.1092 -4.8243 3.6144 41 1 10.2572 -4.1313 0.6427 42 1 10.2187 -2.9163 1.9480 43 1 3.7455 -3.1264 0.9319 44 1 3.5881 -3.1782 -0.8429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -40.288971 kcal Electronic energy + Delta-G solvation = -22109.403306 eV Core-core repulsion = 19025.870998 eV Total energy + Delta-G solvation = -3083.532308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08052 -38.49545 -36.90513 -33.58906 -32.66606 -31.74643 -31.06499 -30.57760 -27.61190 -25.06928 -24.75018 -22.46590 -22.10418 -21.68553 -19.85223 -18.42572 -17.97543 -16.97201 -16.66907 -15.99619 -15.46166 -15.22138 -14.66003 -14.28438 -13.90384 -13.71855 -13.53352 -13.31115 -12.96426 -12.78444 -12.53126 -12.50428 -12.33726 -12.22933 -12.10210 -11.51925 -11.40779 -11.15331 -10.97718 -10.75711 -10.53938 -10.33377 -10.18789 -10.15167 -9.84221 -9.53090 -9.24888 -9.01608 -8.95525 -8.57770 -8.07019 -6.10841 -4.10829 2.35450 2.97890 3.22423 3.34656 3.36857 3.42657 4.37234 4.54171 4.62257 4.65805 4.86503 5.05276 5.09772 5.19000 5.21564 5.32256 5.32401 5.36019 5.47317 5.53927 5.55913 5.58767 5.67340 5.76793 5.80594 5.88252 5.96932 5.97356 6.05670 6.19952 6.23700 6.28486 6.35663 6.52233 6.67740 6.72684 6.74422 6.86253 7.00206 7.13461 7.45329 7.71684 7.87237 8.45802 8.57108 8.92641 9.50754 11.02257 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035193 B = 0.003896 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.419067 B = 7185.827472 C = 7483.079738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.030 0.970 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.610 5.610 15 C 0.508 3.492 16 O -0.544 6.544 17 C -0.133 4.133 18 C -0.044 4.044 19 H 0.088 0.912 20 C -0.128 4.128 21 C -0.177 4.177 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.127 3.873 26 H 0.264 0.736 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.872 -6.504 -1.021 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.012 4.012 14 N -0.342 5.342 15 C 0.296 3.704 16 O -0.423 6.423 17 C -0.173 4.173 18 C -0.063 4.063 19 H 0.106 0.894 20 C -0.146 4.146 21 C -0.195 4.195 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.153 4.153 25 C 0.006 3.994 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.418 -6.731 -0.538 22.458 hybrid contribution 0.178 1.076 -0.227 1.114 sum 21.596 -5.655 -0.765 22.338 Atomic orbital electron populations 1.69896 1.06272 1.26995 1.50512 1.24989 0.94689 0.99017 0.94370 0.86817 0.79923 0.83552 0.77755 1.20590 1.22507 1.19142 1.20918 0.88343 0.94724 1.51295 0.90615 1.19463 0.96829 0.91538 0.93603 0.95242 1.21987 0.92006 1.00703 1.01287 1.22009 0.98736 0.95511 1.01525 1.21684 0.97231 0.92615 0.89703 1.48370 1.08374 1.50216 1.27274 1.20568 0.89153 0.78871 0.81761 1.90669 1.75579 1.43517 1.32487 1.21729 0.92736 1.02049 1.00743 1.19853 0.94173 0.93339 0.98906 0.89402 1.22240 0.99929 0.93761 0.98694 1.21983 0.95384 0.98549 1.03570 1.20409 0.94362 0.97076 1.00618 1.21589 1.00144 0.94714 0.99300 1.21671 0.94475 0.99194 0.99968 1.21750 0.75946 0.99327 1.02347 0.92591 0.93235 0.91942 0.91751 0.92135 0.91513 0.90606 0.89156 0.88967 0.86942 0.88304 0.91361 0.91561 0.91873 0.91694 0.91663 0.91627 0.89628 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 21.77 24.39 -169.99 -4.15 17.63 16 4 H -0.28 -6.56 6.86 56.52 0.39 -6.17 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 7 C -0.51 -14.29 9.15 -34.44 -0.31 -14.60 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 10 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 11 C -0.12 -2.48 4.66 -26.68 -0.12 -2.60 16 12 C -0.14 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C 0.11 1.50 6.34 -3.71 -0.02 1.48 16 14 N -0.61 -10.37 2.97 -172.76 -0.51 -10.88 16 15 C 0.51 8.39 7.33 -10.98 -0.08 8.31 16 16 O -0.54 -10.91 13.66 5.55 0.08 -10.83 16 17 C -0.13 -1.55 3.49 -27.88 -0.10 -1.65 16 18 C -0.04 -0.52 2.12 -92.06 -0.19 -0.71 16 19 H 0.09 1.18 7.96 -51.93 -0.41 0.77 16 20 C -0.13 -1.64 8.41 -35.90 -0.30 -1.94 16 21 C -0.18 -1.95 9.80 -35.90 -0.35 -2.30 16 22 C -0.09 -0.77 6.11 -28.18 -0.17 -0.95 16 23 C -0.12 -1.03 6.01 -26.52 -0.16 -1.19 16 24 C -0.12 -1.04 5.30 -26.52 -0.14 -1.18 16 25 C 0.13 2.63 5.66 -3.71 -0.02 2.61 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 33 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.11 1.71 6.47 -52.49 -0.34 1.37 16 36 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 8.13 -51.92 -0.42 0.18 16 41 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.93 7.01 -51.93 -0.36 1.57 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -31.47 330.53 -8.69 -40.16 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.45 Total: 0.73 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.41 Total: -15.16 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.26 Total: -37.49 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.47 -8.69 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.133 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds