Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00239 * 2 1 4 4 H 1.48501 * 109.46983 * 269.99661 * 3 2 1 5 5 H 1.48494 * 109.47305 * 29.99763 * 3 2 1 6 6 H 1.48506 * 109.47282 * 150.00286 * 3 2 1 7 7 C 1.37884 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00325 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99772 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49756 * 60.06396 * 9 7 2 11 11 C 1.53043 * 109.49542 * 300.00093 * 9 7 2 12 12 C 1.53046 * 109.53700 * 178.65056 * 11 9 7 13 13 C 1.53195 * 109.30793 * 61.36640 * 12 11 9 14 14 N 1.46923 * 108.77575 * 305.36150 * 13 12 11 15 15 C 1.34778 * 120.63136 * 233.60857 * 14 13 12 16 16 O 1.21285 * 119.99524 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00059 * 0.02562 * 15 14 13 18 18 C 1.53000 * 109.47011 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.35965 * 304.72686 * 18 17 15 20 20 C 1.50074 * 109.35477 * 64.31538 * 18 17 15 21 21 C 1.29443 * 124.07510 * 137.33701 * 20 18 17 22 22 C 1.50064 * 124.07326 * 359.53180 * 21 20 18 23 23 C 1.53022 * 110.15333 * 17.12684 * 22 21 20 24 24 C 1.53025 * 109.35770 * 185.00015 * 18 17 15 25 25 C 1.46931 * 118.73730 * 53.61542 * 14 13 12 26 26 H 0.96998 * 119.99368 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46060 * 58.63528 * 11 9 7 28 28 H 1.08998 * 109.45045 * 298.66512 * 11 9 7 29 29 H 1.08990 * 109.49711 * 181.31709 * 12 11 9 30 30 H 1.08999 * 109.49785 * 301.41955 * 12 11 9 31 31 H 1.08996 * 109.58476 * 65.15647 * 13 12 11 32 32 H 1.09006 * 109.58092 * 185.57719 * 13 12 11 33 33 H 1.08994 * 109.47009 * 300.00240 * 17 15 14 34 34 H 1.09006 * 109.46687 * 60.00343 * 17 15 14 35 35 H 1.07995 * 117.96196 * 317.30867 * 20 18 17 36 36 H 1.08001 * 117.96299 * 179.54600 * 21 20 18 37 37 H 1.09004 * 109.35893 * 256.92161 * 22 21 20 38 38 H 1.09001 * 109.35771 * 137.34137 * 22 21 20 39 39 H 1.08998 * 109.64580 * 190.87970 * 23 22 21 40 40 H 1.09009 * 109.81484 * 70.34879 * 23 22 21 41 41 H 1.08993 * 109.64008 * 310.04356 * 24 18 17 42 42 H 1.09001 * 109.63714 * 70.67544 * 24 18 17 43 43 H 1.09001 * 109.58511 * 186.59744 * 25 14 13 44 44 H 1.09004 * 109.58611 * 66.17544 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8750 -0.6812 0.8916 11 6 4.0228 -0.4731 -1.2482 12 6 5.5529 -0.4431 -1.2317 13 6 6.0879 -1.8785 -1.2489 14 7 5.4868 -2.6206 -0.1324 15 6 6.2631 -3.2731 0.7555 16 8 5.7547 -3.8824 1.6726 17 6 7.7626 -3.2454 0.6086 18 6 8.4007 -4.0571 1.7376 19 1 8.0537 -3.6754 2.6978 20 6 7.9993 -5.4969 1.6033 21 6 8.8097 -6.4937 1.7624 22 6 10.2661 -6.3485 2.0936 23 6 10.5485 -4.9411 2.6236 24 6 9.9233 -3.9250 1.6595 25 6 4.0234 -2.6380 -0.0021 26 1 -0.4849 0.8401 -0.0004 27 1 3.6398 0.5473 -1.2609 28 1 3.6795 -1.0009 -2.1380 29 1 5.9157 0.0909 -2.1098 30 1 5.8971 0.0627 -0.3297 31 1 5.8209 -2.3566 -2.1914 32 1 7.1721 -1.8656 -1.1375 33 1 8.0416 -3.6773 -0.3525 34 1 8.1137 -2.2146 0.6594 35 1 6.9701 -5.7150 1.3592 36 1 8.4130 -7.4919 1.6497 37 1 10.8598 -6.5223 1.1960 38 1 10.5390 -7.0819 2.8523 39 1 11.6250 -4.7794 2.6788 40 1 10.1092 -4.8243 3.6144 41 1 10.2572 -4.1313 0.6427 42 1 10.2187 -2.9163 1.9480 43 1 3.7455 -3.1264 0.9319 44 1 3.5881 -3.1782 -0.8429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597905673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -59.399239 kcal Electronic energy + Delta-G solvation = -22110.231989 eV Core-core repulsion = 19025.870998 eV Total energy + Delta-G solvation = -3084.360991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33179 -39.49593 -38.28756 -35.37046 -33.82162 -33.30808 -32.16057 -31.83524 -28.70659 -26.85306 -26.08819 -23.35111 -23.16457 -22.96196 -21.42186 -19.78013 -18.84888 -18.79171 -18.09866 -16.97358 -16.76719 -16.66181 -16.20753 -15.41694 -15.09969 -15.07532 -14.91062 -14.59569 -14.36523 -14.06633 -13.76741 -13.60888 -13.45117 -13.21092 -13.07844 -12.97791 -12.78622 -12.44283 -12.34404 -12.10149 -11.91066 -11.65878 -11.51074 -11.37209 -11.25139 -11.08479 -10.96256 -10.70299 -10.51577 -9.84890 -9.50806 -8.33920 -6.39364 1.26440 1.34352 1.43994 1.44819 1.72073 2.13616 2.29535 3.00973 3.57405 3.83410 3.84625 4.01552 4.02567 4.07565 4.23616 4.30591 4.32930 4.41221 4.48988 4.54619 4.55377 4.66162 4.74117 4.76215 4.82064 4.85859 4.90413 4.95538 4.97646 5.11127 5.12530 5.13817 5.14500 5.26088 5.37895 5.44145 5.46709 5.53529 5.64553 5.74614 5.83969 6.12310 6.23704 6.58639 6.67207 7.25247 7.29148 8.83056 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035193 B = 0.003896 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.419067 B = 7185.827472 C = 7483.079738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.301 1.301 6 H -0.252 1.252 7 C -0.525 4.525 8 H 0.030 0.970 9 C 0.009 3.991 10 H 0.013 0.987 11 C -0.122 4.122 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.613 5.613 15 C 0.500 3.500 16 O -0.592 6.592 17 C -0.121 4.121 18 C -0.042 4.042 19 H 0.060 0.940 20 C -0.154 4.154 21 C -0.164 4.164 22 C -0.088 4.088 23 C -0.122 4.122 24 C -0.109 4.109 25 C 0.138 3.862 26 H 0.267 0.733 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.855 -5.206 -2.596 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.229 1.229 6 H -0.176 1.176 7 C -0.563 4.563 8 H 0.049 0.951 9 C -0.010 4.010 10 H 0.031 0.969 11 C -0.160 4.160 12 C -0.171 4.171 13 C -0.015 4.015 14 N -0.345 5.345 15 C 0.290 3.710 16 O -0.473 6.473 17 C -0.160 4.160 18 C -0.061 4.061 19 H 0.078 0.922 20 C -0.173 4.173 21 C -0.182 4.182 22 C -0.125 4.125 23 C -0.159 4.159 24 C -0.146 4.146 25 C 0.015 3.985 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 26.444 -5.441 -2.140 27.082 hybrid contribution -1.473 0.484 0.322 1.584 sum 24.971 -4.957 -1.817 25.523 Atomic orbital electron populations 1.70058 1.08325 1.28187 1.52383 1.25920 0.95486 1.03248 0.93918 0.85709 0.78750 0.78083 0.79037 1.18105 1.22919 1.17585 1.21255 0.91266 0.93129 1.50699 0.95149 1.19334 0.93568 0.93364 0.94777 0.96913 1.21866 0.96115 0.99053 0.98953 1.21998 0.94433 0.97319 1.03397 1.22039 0.99643 0.90914 0.88865 1.48443 1.06423 1.50967 1.28697 1.21595 0.91296 0.77512 0.80565 1.90656 1.76832 1.45311 1.34469 1.21798 0.88089 1.04048 1.02087 1.19833 0.96447 0.92188 0.97622 0.92163 1.22119 0.98557 0.95314 1.01273 1.22241 0.96791 0.98023 1.01187 1.20487 0.92433 0.97796 1.01750 1.21626 1.01441 0.94327 0.98522 1.21660 0.91685 1.00219 1.01035 1.21247 0.79306 0.97427 1.00486 0.92429 0.94503 0.91937 0.87732 0.92253 0.89965 0.85861 0.86308 0.85973 0.90572 0.88406 0.89508 0.90563 0.89565 0.93030 0.90030 0.90091 0.93052 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.01 0.67 5.45 84.66 0.46 1.13 16 3 Si 0.96 45.21 24.39 68.60 1.67 46.88 16 4 H -0.26 -11.06 6.86 99.48 0.68 -10.38 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 7 C -0.53 -30.75 9.15 25.60 0.23 -30.51 16 8 H 0.03 1.98 7.99 -2.92 -0.02 1.96 16 9 C 0.01 0.43 1.84 -11.46 -0.02 0.41 16 10 H 0.01 0.64 7.21 -2.39 -0.02 0.62 16 11 C -0.12 -4.72 4.66 30.62 0.14 -4.58 16 12 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 13 C 0.11 2.42 6.34 86.36 0.55 2.96 16 14 N -0.61 -20.11 2.97 -818.89 -2.43 -22.54 16 15 C 0.50 16.17 7.33 87.66 0.64 16.82 16 16 O -0.59 -24.89 13.66 -3.04 -0.04 -24.94 16 17 C -0.12 -2.43 3.49 29.85 0.10 -2.33 16 18 C -0.04 -0.92 2.12 -11.73 -0.02 -0.94 16 19 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 20 C -0.15 -3.93 8.41 27.04 0.23 -3.70 16 21 C -0.16 -3.43 9.80 27.04 0.27 -3.17 16 22 C -0.09 -1.28 6.11 29.66 0.18 -1.10 16 23 C -0.12 -1.68 6.01 30.73 0.18 -1.50 16 24 C -0.11 -1.52 5.30 30.73 0.16 -1.36 16 25 C 0.14 5.94 5.66 86.36 0.49 6.43 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.04 1.51 3.25 -2.39 -0.01 1.50 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.70 5.93 -2.38 -0.01 1.68 16 33 H 0.12 1.78 7.94 -2.39 -0.02 1.76 16 34 H 0.12 1.78 7.69 -2.38 -0.02 1.76 16 35 H 0.08 2.47 6.47 -2.91 -0.02 2.45 16 36 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.85 8.13 -2.38 -0.02 0.83 16 41 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 2.51 7.01 -2.39 -0.02 2.49 16 44 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -75.81 330.53 4.16 -71.65 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.88 Total: 13.83 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.78 Total: -24.79 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.13 Total: -82.64 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -75.81 4.16 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.251 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds