Wall clock time and date at job start Mon Mar 30 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48492 * 109.47522 * 270.00068 * 3 2 1 5 5 H 1.48500 * 109.47128 * 30.00668 * 3 2 1 6 6 H 1.48505 * 109.47022 * 149.99967 * 3 2 1 7 7 C 1.37880 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99754 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49611 * 59.93437 * 9 7 2 11 11 C 1.53044 * 109.52456 * 299.85489 * 9 7 2 12 12 C 1.53040 * 109.53662 * 178.66800 * 11 9 7 13 13 C 1.53197 * 109.31110 * 61.36306 * 12 11 9 14 14 N 1.46957 * 108.89063 * 305.44560 * 13 12 11 15 15 C 1.34780 * 120.65462 * 233.53473 * 14 13 12 16 16 O 1.21276 * 120.00248 * 179.81541 * 15 14 13 17 17 C 1.50701 * 119.99585 * 359.81587 * 15 14 13 18 18 C 1.53002 * 109.46946 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.35514 * 55.00598 * 18 17 15 20 20 C 1.50064 * 109.36160 * 295.27912 * 18 17 15 21 21 C 1.29254 * 124.21731 * 222.51160 * 20 18 17 22 22 C 1.50062 * 124.02149 * 0.72548 * 21 20 18 23 23 C 1.53028 * 110.14607 * 342.74215 * 22 21 20 24 24 C 1.53026 * 109.35630 * 174.72237 * 18 17 15 25 25 C 1.46926 * 118.71783 * 53.35357 * 14 13 12 26 26 H 0.97002 * 119.99523 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.45986 * 298.68603 * 11 9 7 28 28 H 1.09000 * 109.45849 * 58.64692 * 11 9 7 29 29 H 1.08995 * 109.49643 * 181.31582 * 12 11 9 30 30 H 1.08996 * 109.49892 * 301.41776 * 12 11 9 31 31 H 1.09001 * 109.58145 * 65.15551 * 13 12 11 32 32 H 1.08997 * 109.58684 * 185.43073 * 13 12 11 33 33 H 1.09002 * 109.47438 * 299.99718 * 17 15 14 34 34 H 1.08999 * 109.47522 * 60.00065 * 17 15 14 35 35 H 1.07997 * 117.95869 * 42.63625 * 20 18 17 36 36 H 1.08005 * 118.01634 * 180.57772 * 21 20 18 37 37 H 1.09000 * 109.36055 * 222.53570 * 22 21 20 38 38 H 1.09001 * 109.24500 * 102.87286 * 22 21 20 39 39 H 1.08998 * 109.63799 * 289.74904 * 23 22 21 40 40 H 1.09003 * 109.81668 * 169.22546 * 23 22 21 41 41 H 1.09001 * 109.64572 * 289.33059 * 24 18 17 42 42 H 1.08999 * 109.64304 * 49.96464 * 24 18 17 43 43 H 1.09002 * 109.58861 * 186.78362 * 25 14 13 44 44 H 1.08996 * 109.58519 * 66.50253 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8895 11 6 0.3738 -2.5833 1.2508 12 6 -0.4167 -3.8937 1.2345 13 6 0.5594 -5.0744 1.2478 14 7 1.5027 -4.9245 0.1309 15 6 1.6801 -5.9225 -0.7573 16 8 2.4591 -5.7849 -1.6766 17 6 0.9103 -7.2095 -0.6083 18 6 1.2939 -8.1670 -1.7383 19 1 2.3752 -8.3043 -1.7440 20 6 0.8592 -7.5859 -3.0518 21 6 0.3000 -8.2660 -3.9980 22 6 -0.0078 -9.7320 -3.9093 23 6 0.7941 -10.3711 -2.7734 24 6 0.6123 -9.5182 -1.5115 25 6 2.2459 -3.6640 -0.0012 26 1 -0.4849 0.8401 0.0004 27 1 1.0045 -2.5507 2.1392 28 1 -0.3186 -1.7416 1.2662 29 1 -1.0585 -3.9423 2.1141 30 1 -1.0289 -3.9380 0.3338 31 1 1.1092 -5.0832 2.1890 32 1 0.0061 -6.0071 1.1392 33 1 1.1487 -7.6664 0.3522 34 1 -0.1586 -7.0012 -0.6561 35 1 1.0257 -6.5320 -3.2191 36 1 0.0357 -7.7472 -4.9077 37 1 0.2534 -10.2138 -4.8515 38 1 -1.0728 -9.8647 -3.7187 39 1 1.8495 -10.4048 -3.0440 40 1 0.4310 -11.3820 -2.5879 41 1 1.0704 -10.0214 -0.6600 42 1 -0.4503 -9.3654 -1.3225 43 1 2.8056 -3.6660 -0.9365 44 1 2.9349 -3.5565 0.8366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:36 Heat of formation + Delta-G solvation = -48.699279 kcal Electronic energy + Delta-G solvation = -22073.369291 eV Core-core repulsion = 18989.472285 eV Total energy + Delta-G solvation = -3083.897006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93190 -38.36050 -36.65087 -33.53342 -32.60217 -31.32160 -30.98915 -30.21587 -27.38224 -25.06465 -24.33277 -22.38846 -22.05309 -21.61883 -19.70765 -18.18653 -17.90189 -16.84517 -16.23421 -15.84404 -15.27182 -15.04275 -14.54514 -14.23796 -13.62279 -13.61288 -13.42936 -12.92279 -12.75951 -12.70467 -12.65739 -12.21789 -12.03043 -12.01739 -11.95053 -11.43144 -11.00705 -10.92540 -10.82220 -10.73291 -10.54872 -10.28426 -10.09685 -9.95830 -9.76603 -9.44999 -9.18793 -8.89127 -8.80996 -8.38899 -7.86756 -6.02383 -4.09395 2.45924 3.10241 3.29799 3.36331 3.39342 3.58756 4.42252 4.63109 4.69576 4.74143 4.96703 5.15789 5.22469 5.27500 5.34577 5.42169 5.45455 5.54778 5.62330 5.65963 5.67610 5.75308 5.79896 5.83623 5.86555 6.03482 6.12560 6.30421 6.33393 6.36326 6.42160 6.48812 6.66997 6.81388 6.84838 6.98758 7.10437 7.17624 7.33598 7.68720 7.92049 8.04815 8.07444 8.37543 8.69970 8.94470 9.55513 11.03173 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.003800 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.522972 B = 7366.908189 C = 7678.012272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.507 3.493 16 O -0.549 6.549 17 C -0.132 4.132 18 C -0.043 4.043 19 H 0.087 0.913 20 C -0.128 4.128 21 C -0.177 4.177 22 C -0.088 4.088 23 C -0.119 4.119 24 C -0.116 4.116 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -18.171 0.065 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.295 3.705 16 O -0.428 6.428 17 C -0.172 4.172 18 C -0.061 4.061 19 H 0.105 0.895 20 C -0.146 4.146 21 C -0.195 4.195 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.082 -17.956 -0.409 18.081 hybrid contribution 0.313 1.138 0.077 1.182 sum -1.769 -16.818 -0.332 16.914 Atomic orbital electron populations 1.69878 1.05895 1.26456 1.50563 1.24940 0.94861 0.99085 0.94944 0.86578 0.79849 0.83326 0.78159 1.20664 1.21253 1.19877 1.21085 0.92993 0.90316 1.50870 0.92501 1.18964 0.92971 0.91207 0.94755 0.95335 1.21624 0.99441 0.95374 0.98583 1.22001 0.97665 0.96737 1.00940 1.21734 0.91382 0.99025 0.89261 1.48342 1.42125 1.16072 1.27159 1.20541 0.82923 0.85152 0.81851 1.90649 1.38031 1.81776 1.32375 1.21723 1.01340 0.94033 1.00140 1.19839 1.00912 0.93123 0.92247 0.89527 1.22193 0.97250 1.00723 0.94432 1.21932 1.02521 0.95825 0.99272 1.20413 0.99900 0.93553 0.98598 1.21586 1.00629 0.98306 0.95170 1.21679 1.00914 0.95064 0.97683 1.21966 0.95092 0.81988 1.01391 0.92991 0.94606 0.88688 0.92483 0.92407 0.92036 0.91108 0.89165 0.89082 0.86914 0.88262 0.91598 0.91355 0.91788 0.91901 0.91707 0.91619 0.90372 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.28 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 13 C 0.11 1.66 6.33 -3.69 -0.02 1.64 16 14 N -0.60 -11.10 2.98 -172.74 -0.51 -11.62 16 15 C 0.51 8.96 7.33 -10.98 -0.08 8.88 16 16 O -0.55 -11.55 13.69 5.56 0.08 -11.47 16 17 C -0.13 -1.69 3.49 -27.88 -0.10 -1.79 16 18 C -0.04 -0.53 2.12 -92.06 -0.19 -0.73 16 19 H 0.09 1.19 7.95 -51.93 -0.41 0.78 16 20 C -0.13 -1.81 8.39 -35.85 -0.30 -2.11 16 21 C -0.18 -2.18 9.80 -35.86 -0.35 -2.53 16 22 C -0.09 -0.85 6.12 -28.18 -0.17 -1.02 16 23 C -0.12 -1.09 6.01 -26.51 -0.16 -1.25 16 24 C -0.12 -1.11 5.30 -26.51 -0.14 -1.25 16 25 C 0.12 2.54 5.65 -3.71 -0.02 2.52 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 33 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 34 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.11 1.93 6.51 -52.49 -0.34 1.59 16 36 H 0.10 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -29.66 337.41 -9.77 -39.43 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.59 Total: 1.49 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.43 Total: -14.68 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.11 Total: -35.99 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.66 -9.77 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.274 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds