Wall clock time and date at job start Mon Mar 30 2020 02:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48492 * 109.47058 * 240.00294 * 3 2 1 5 5 H 1.48505 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47029 * 120.00020 * 3 2 1 7 7 C 1.37876 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00098 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49886 * 299.93940 * 9 7 2 11 11 C 1.53041 * 109.49641 * 60.00212 * 9 7 2 12 12 C 1.53032 * 109.53910 * 181.31635 * 11 9 7 13 13 C 1.53187 * 109.31602 * 298.63679 * 12 11 9 14 14 N 1.46927 * 108.77549 * 54.62983 * 13 12 11 15 15 C 1.34783 * 120.62857 * 126.37213 * 14 13 12 16 16 O 1.21277 * 120.00155 * 180.02562 * 15 14 13 17 17 C 1.50701 * 120.00107 * 0.02562 * 15 14 13 18 18 H 1.09005 * 115.57495 * 325.75390 * 17 15 14 19 19 C 1.53085 * 117.51069 * 111.49877 * 17 15 14 20 20 C 1.52542 * 117.51262 * 180.02562 * 17 15 14 21 21 C 1.53878 * 120.82221 * 2.74386 * 20 17 15 22 22 C 1.54992 * 104.05709 * 167.64183 * 21 20 17 23 23 C 1.54927 * 102.82242 * 322.42947 * 22 21 20 24 24 C 1.53479 * 121.09046 * 142.11181 * 20 17 15 25 25 C 1.46920 * 118.74215 * 306.65330 * 14 13 12 26 26 H 0.97000 * 120.00420 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46064 * 61.29335 * 11 9 7 28 28 H 1.09004 * 109.45031 * 301.33457 * 11 9 7 29 29 H 1.09007 * 109.50270 * 178.68350 * 12 11 9 30 30 H 1.09008 * 109.52610 * 58.60414 * 12 11 9 31 31 H 1.09008 * 109.58680 * 294.85002 * 13 12 11 32 32 H 1.08998 * 109.70993 * 174.49409 * 13 12 11 33 33 H 1.09006 * 117.51109 * 0.02562 * 19 17 15 34 34 H 1.09003 * 117.51659 * 214.91721 * 19 17 15 35 35 H 1.08998 * 110.51210 * 49.00275 * 21 20 17 36 36 H 1.09001 * 110.51397 * 286.28587 * 21 20 17 37 37 H 1.08996 * 110.74258 * 204.09028 * 22 21 20 38 38 H 1.09002 * 110.74223 * 80.76136 * 22 21 20 39 39 H 1.09004 * 110.48186 * 156.40860 * 23 22 21 40 40 H 1.09000 * 110.47752 * 279.03536 * 23 22 21 41 41 H 1.09010 * 110.07011 * 96.68898 * 24 20 17 42 42 H 1.08997 * 110.11845 * 335.18461 * 24 20 17 43 43 H 1.08996 * 109.59253 * 173.14381 * 25 14 13 44 44 H 1.09005 * 109.58470 * 293.56054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6254 -2.5581 0.8901 11 6 0.3706 -2.5806 -1.2496 12 6 -0.4197 -3.8910 -1.2341 13 6 0.5562 -5.0716 -1.2528 14 7 1.4999 -4.9228 -0.1365 15 6 1.6772 -5.9219 0.7507 16 8 2.4587 -5.7866 1.6681 17 6 0.9043 -7.2071 0.6025 18 1 -0.1064 -7.1055 0.2070 19 6 1.6897 -8.4646 0.2212 20 6 1.1486 -8.2997 1.6386 21 6 2.1019 -8.0639 2.8233 22 6 1.8206 -9.2540 3.7756 23 6 0.2884 -9.4432 3.6460 24 6 -0.0020 -9.1751 2.1536 25 6 2.2418 -3.6618 -0.0019 26 1 -0.4851 0.8400 0.0004 27 1 0.9988 -2.5459 -2.1397 28 1 -0.3219 -1.7389 -1.2611 29 1 -1.0641 -3.9378 -2.1121 30 1 -1.0301 -3.9377 -0.3322 31 1 1.1036 -5.0784 -2.1954 32 1 0.0053 -6.0057 -1.1435 33 1 2.7654 -8.3622 0.0779 34 1 1.1957 -9.1902 -0.4251 35 1 1.8730 -7.1186 3.3154 36 1 3.1390 -8.0798 2.4881 37 1 2.0931 -9.0013 4.8002 38 1 2.3493 -10.1474 3.4435 39 1 0.0059 -10.4617 3.9126 40 1 -0.2390 -8.7238 4.2724 41 1 -0.0316 -10.1158 1.6034 42 1 -0.9505 -8.6492 2.0457 43 1 2.8010 -3.6648 0.9337 44 1 2.9295 -3.5513 -0.8404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:21 Heat of formation + Delta-G solvation = -31.313947 kcal Electronic energy + Delta-G solvation = -22269.039596 eV Core-core repulsion = 19185.896474 eV Total energy + Delta-G solvation = -3083.143122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23639 -38.37708 -36.53406 -34.15896 -33.39228 -31.28940 -30.24502 -28.68449 -26.10886 -25.11331 -24.78972 -22.98674 -21.64893 -20.72436 -19.88701 -18.80848 -18.01619 -16.88530 -16.20736 -15.55511 -15.40598 -14.77792 -14.62958 -14.23978 -13.73161 -13.50528 -13.33797 -13.03161 -12.76008 -12.63302 -12.36662 -12.07289 -11.96191 -11.95591 -11.15913 -11.01939 -10.96461 -10.88587 -10.80442 -10.76436 -10.55803 -10.32727 -10.21965 -9.95537 -9.79286 -9.62698 -9.42043 -9.08106 -8.80155 -8.37738 -7.85255 -6.01480 -4.08786 2.90326 3.31661 3.35951 3.38517 3.52425 3.87563 4.40545 4.43836 4.61119 4.78921 4.88890 5.00686 5.13497 5.21104 5.28506 5.46254 5.49783 5.61622 5.65600 5.67086 5.73315 5.76841 5.82164 5.88215 5.97427 6.01579 6.11806 6.13823 6.20872 6.34184 6.39950 6.42609 6.50784 6.59163 6.67920 6.83357 7.01243 7.18624 7.34673 7.69221 7.92978 8.06320 8.08429 8.38207 8.72430 8.94901 9.56056 11.03971 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.004048 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.267159 B = 6915.778004 C = 7291.949155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.600 5.600 15 C 0.538 3.462 16 O -0.547 6.547 17 C -0.179 4.179 18 H 0.121 0.879 19 C -0.143 4.143 20 C -0.096 4.096 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.089 4.089 25 C 0.118 3.882 26 H 0.261 0.739 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -17.955 0.045 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.331 5.331 15 C 0.325 3.675 16 O -0.425 6.425 17 C -0.200 4.200 18 H 0.138 0.862 19 C -0.180 4.180 20 C -0.096 4.096 21 C -0.113 4.113 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.126 4.126 25 C -0.003 4.003 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.180 -17.732 0.520 17.779 hybrid contribution 0.226 1.073 -0.307 1.139 sum -0.954 -16.659 0.213 16.687 Atomic orbital electron populations 1.69862 1.05899 1.26572 1.50459 1.24932 0.94852 0.99059 0.94917 0.86638 0.79592 0.82991 0.78676 1.20254 1.21303 1.20221 1.21042 0.92950 0.90312 1.51037 0.92548 1.18887 0.93030 0.91218 0.94798 0.95362 1.21623 0.99452 0.95378 0.98549 1.22013 0.97688 0.96788 1.00904 1.21751 0.91360 0.98980 0.89231 1.48242 1.42101 1.15778 1.26980 1.19538 0.82295 0.83900 0.81724 1.90636 1.37963 1.81468 1.32469 1.22351 1.01106 0.89599 1.06922 0.86150 1.22998 1.00115 0.97179 0.97735 1.21748 0.98946 0.98084 0.90843 1.21855 0.97935 0.98193 0.93281 1.22570 0.95624 0.98705 0.99660 1.22335 0.96696 1.01020 0.95921 1.21664 0.96622 0.98360 0.95948 1.21888 0.95126 0.81873 1.01400 0.92929 0.94614 0.88653 0.92524 0.92440 0.92066 0.91020 0.88404 0.88165 0.89771 0.91567 0.91704 0.91877 0.91872 0.91547 0.91493 0.91507 0.90343 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.31 55.43 0.63 -24.44 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.99 2.24 -91.88 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.14 -2.44 6.08 -26.62 -0.16 -2.60 16 13 C 0.11 1.74 6.35 -3.71 -0.02 1.72 16 14 N -0.60 -11.32 2.98 -173.04 -0.52 -11.83 16 15 C 0.54 9.87 7.48 -10.98 -0.08 9.79 16 16 O -0.55 -11.60 13.12 5.56 0.07 -11.53 16 17 C -0.18 -2.48 4.99 -91.96 -0.46 -2.94 16 18 H 0.12 1.49 6.56 -51.93 -0.34 1.15 16 19 C -0.14 -1.65 9.94 -26.89 -0.27 -1.92 16 20 C -0.10 -1.20 2.45 -154.24 -0.38 -1.58 16 21 C -0.08 -1.03 4.77 -25.22 -0.12 -1.15 16 22 C -0.13 -1.37 6.91 -24.66 -0.17 -1.54 16 23 C -0.12 -1.19 6.84 -24.99 -0.17 -1.36 16 24 C -0.09 -0.90 6.54 -25.76 -0.17 -1.07 16 25 C 0.12 2.60 5.63 -3.94 -0.02 2.58 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 2.44 6.04 -51.93 -0.31 2.12 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 31 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.07 0.92 5.51 -51.93 -0.29 0.64 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.38 6.97 -51.93 -0.36 1.02 16 36 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -29.44 337.45 -10.04 -39.49 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.54 Total: 1.71 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.75 Total: -14.65 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.28 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.44 -10.04 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.172 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds