Wall clock time and date at job start Mon Mar 30 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48492 * 109.47058 * 240.00294 * 3 2 1 5 5 H 1.48505 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47029 * 120.00020 * 3 2 1 7 7 C 1.37876 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00098 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49886 * 299.93940 * 9 7 2 11 11 C 1.53041 * 109.49641 * 60.00212 * 9 7 2 12 12 C 1.53032 * 109.53910 * 181.31635 * 11 9 7 13 13 C 1.53187 * 109.31602 * 298.63679 * 12 11 9 14 14 N 1.46927 * 108.77549 * 54.62983 * 13 12 11 15 15 C 1.34783 * 120.62857 * 126.37213 * 14 13 12 16 16 O 1.21277 * 120.00155 * 180.02562 * 15 14 13 17 17 C 1.50701 * 120.00107 * 0.02562 * 15 14 13 18 18 H 1.09005 * 115.57495 * 325.75390 * 17 15 14 19 19 C 1.53085 * 117.51069 * 111.49877 * 17 15 14 20 20 C 1.52542 * 117.51262 * 180.02562 * 17 15 14 21 21 C 1.53878 * 120.82221 * 2.74386 * 20 17 15 22 22 C 1.54992 * 104.05709 * 167.64183 * 21 20 17 23 23 C 1.54927 * 102.82242 * 322.42947 * 22 21 20 24 24 C 1.53479 * 121.09046 * 142.11181 * 20 17 15 25 25 C 1.46920 * 118.74215 * 306.65330 * 14 13 12 26 26 H 0.97000 * 120.00420 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46064 * 61.29335 * 11 9 7 28 28 H 1.09004 * 109.45031 * 301.33457 * 11 9 7 29 29 H 1.09007 * 109.50270 * 178.68350 * 12 11 9 30 30 H 1.09008 * 109.52610 * 58.60414 * 12 11 9 31 31 H 1.09008 * 109.58680 * 294.85002 * 13 12 11 32 32 H 1.08998 * 109.70993 * 174.49409 * 13 12 11 33 33 H 1.09006 * 117.51109 * 0.02562 * 19 17 15 34 34 H 1.09003 * 117.51659 * 214.91721 * 19 17 15 35 35 H 1.08998 * 110.51210 * 49.00275 * 21 20 17 36 36 H 1.09001 * 110.51397 * 286.28587 * 21 20 17 37 37 H 1.08996 * 110.74258 * 204.09028 * 22 21 20 38 38 H 1.09002 * 110.74223 * 80.76136 * 22 21 20 39 39 H 1.09004 * 110.48186 * 156.40860 * 23 22 21 40 40 H 1.09000 * 110.47752 * 279.03536 * 23 22 21 41 41 H 1.09010 * 110.07011 * 96.68898 * 24 20 17 42 42 H 1.08997 * 110.11845 * 335.18461 * 24 20 17 43 43 H 1.08996 * 109.59253 * 173.14381 * 25 14 13 44 44 H 1.09005 * 109.58470 * 293.56054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6254 -2.5581 0.8901 11 6 0.3706 -2.5806 -1.2496 12 6 -0.4197 -3.8910 -1.2341 13 6 0.5562 -5.0716 -1.2528 14 7 1.4999 -4.9228 -0.1365 15 6 1.6772 -5.9219 0.7507 16 8 2.4587 -5.7866 1.6681 17 6 0.9043 -7.2071 0.6025 18 1 -0.1064 -7.1055 0.2070 19 6 1.6897 -8.4646 0.2212 20 6 1.1486 -8.2997 1.6386 21 6 2.1019 -8.0639 2.8233 22 6 1.8206 -9.2540 3.7756 23 6 0.2884 -9.4432 3.6460 24 6 -0.0020 -9.1751 2.1536 25 6 2.2418 -3.6618 -0.0019 26 1 -0.4851 0.8400 0.0004 27 1 0.9988 -2.5459 -2.1397 28 1 -0.3219 -1.7389 -1.2611 29 1 -1.0641 -3.9378 -2.1121 30 1 -1.0301 -3.9377 -0.3322 31 1 1.1036 -5.0784 -2.1954 32 1 0.0053 -6.0057 -1.1435 33 1 2.7654 -8.3622 0.0779 34 1 1.1957 -9.1902 -0.4251 35 1 1.8730 -7.1186 3.3154 36 1 3.1390 -8.0798 2.4881 37 1 2.0931 -9.0013 4.8002 38 1 2.3493 -10.1474 3.4435 39 1 0.0059 -10.4617 3.9126 40 1 -0.2390 -8.7238 4.2724 41 1 -0.0316 -10.1158 1.6034 42 1 -0.9505 -8.6492 2.0457 43 1 2.8010 -3.6648 0.9337 44 1 2.9295 -3.5513 -0.8404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:20 Heat of formation + Delta-G solvation = -46.530052 kcal Electronic energy + Delta-G solvation = -22269.699416 eV Core-core repulsion = 19185.896474 eV Total energy + Delta-G solvation = -3083.802942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52063 -39.63819 -38.06908 -35.45274 -34.98336 -33.00648 -32.02313 -29.57268 -27.58105 -26.77653 -26.00699 -24.35978 -23.29694 -21.57730 -21.40784 -20.11780 -19.32109 -18.54797 -17.94317 -16.83250 -16.67207 -16.29737 -15.98495 -15.61399 -15.10358 -15.07576 -14.69092 -14.49835 -14.17588 -13.96309 -13.63677 -13.55061 -13.35397 -13.06026 -12.86684 -12.69299 -12.61771 -11.99809 -11.96599 -11.94233 -11.86247 -11.73549 -11.61190 -11.38893 -11.27890 -11.19207 -10.88199 -10.70096 -10.44198 -10.36684 -9.46654 -8.12438 -6.28294 1.39792 1.41555 1.48918 1.56717 2.10562 2.42274 2.82413 3.13698 3.40288 3.64070 3.78099 3.93934 3.97588 4.11579 4.24839 4.31502 4.34143 4.36355 4.52422 4.61158 4.63340 4.76828 4.78042 4.81656 4.86218 4.90882 4.93023 4.97836 5.06111 5.10194 5.11645 5.14002 5.24457 5.27800 5.38055 5.46240 5.47915 5.52737 5.57850 5.59062 5.90681 6.11736 6.32326 6.60235 6.80965 7.27767 7.39971 8.91063 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.004048 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.267159 B = 6915.778004 C = 7291.949155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.017 1.017 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.111 3.889 14 N -0.606 5.606 15 C 0.527 3.473 16 O -0.587 6.587 17 C -0.191 4.191 18 H 0.145 0.855 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.083 4.083 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -20.548 -1.514 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.001 0.999 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.010 4.010 14 N -0.337 5.337 15 C 0.317 3.683 16 O -0.469 6.469 17 C -0.212 4.212 18 H 0.162 0.838 19 C -0.155 4.155 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.121 4.121 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.111 -20.344 -1.057 20.481 hybrid contribution 0.557 1.915 0.248 2.009 sum -1.554 -18.430 -0.809 18.513 Atomic orbital electron populations 1.70002 1.07111 1.27327 1.50731 1.25695 0.95710 1.02292 0.94443 0.85648 0.78453 0.78950 0.78833 1.19203 1.20608 1.20195 1.21414 0.93045 0.91971 1.51563 0.93045 1.18786 0.93199 0.91696 0.94076 0.99908 1.21417 0.98754 0.97131 0.97040 1.21922 0.97854 0.95032 1.01794 1.21979 0.90646 0.99632 0.88764 1.48331 1.42497 1.14617 1.28255 1.20461 0.82018 0.85166 0.80622 1.90624 1.39865 1.82418 1.33958 1.22343 1.01777 0.87689 1.09363 0.83759 1.23130 0.99568 0.95620 0.97172 1.21925 0.99687 0.97808 0.90834 1.21767 0.97347 0.97825 0.94815 1.22547 0.96934 0.97718 0.98797 1.22360 0.95394 1.02220 0.95916 1.21699 0.95428 0.98906 0.96030 1.21419 0.94573 0.83001 1.00121 0.92876 0.94427 0.91912 0.89107 0.93888 0.90222 0.86873 0.89579 0.84223 0.93701 0.93518 0.91830 0.90264 0.89410 0.92511 0.88846 0.91135 0.93187 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 11.31 21.45 0.24 -52.78 16 2 C 0.02 1.00 5.30 84.65 0.45 1.45 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.54 -30.78 8.56 25.60 0.22 -30.56 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.17 2.24 -11.61 -0.03 2.14 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C -0.11 -4.83 4.96 30.62 0.15 -4.68 16 12 C -0.13 -4.41 6.08 30.67 0.19 -4.23 16 13 C 0.11 3.23 6.35 86.36 0.55 3.78 16 14 N -0.61 -22.85 2.98 -819.75 -2.44 -25.29 16 15 C 0.53 19.48 7.48 87.66 0.66 20.14 16 16 O -0.59 -26.31 13.12 -3.02 -0.04 -26.35 16 17 C -0.19 -4.87 4.99 -11.66 -0.06 -4.93 16 18 H 0.14 2.97 6.56 -2.38 -0.02 2.95 16 19 C -0.12 -2.31 9.94 30.49 0.30 -2.01 16 20 C -0.10 -2.34 2.45 -52.01 -0.13 -2.47 16 21 C -0.08 -2.23 4.77 31.57 0.15 -2.08 16 22 C -0.12 -2.47 6.91 31.93 0.22 -2.25 16 23 C -0.12 -2.06 6.84 31.72 0.22 -1.84 16 24 C -0.08 -1.40 6.54 31.22 0.20 -1.19 16 25 C 0.13 6.04 5.63 86.22 0.49 6.52 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.53 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.11 2.40 5.51 -2.39 -0.01 2.39 16 33 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.58 6.97 -2.39 -0.02 1.57 16 36 H 0.05 1.43 8.00 -2.39 -0.02 1.41 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 2.53 7.01 -2.39 -0.02 2.52 16 44 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -69.22 337.45 4.33 -64.89 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.96 Total: 15.46 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.58 Total: -22.20 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.20 Total: -78.07 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.22 4.33 -64.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.362 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds