Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00233 * 3 2 1 5 5 H 1.48503 * 109.47314 * 29.99893 * 3 2 1 6 6 H 1.48502 * 109.47502 * 150.00135 * 3 2 1 7 7 C 1.37877 * 120.00703 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00740 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99473 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49719 * 299.99893 * 9 7 2 11 11 C 1.53036 * 109.49674 * 60.06437 * 9 7 2 12 12 C 1.53046 * 109.53927 * 181.34641 * 11 9 7 13 13 C 1.53189 * 109.31336 * 298.63505 * 12 11 9 14 14 N 1.46935 * 108.77418 * 54.63373 * 13 12 11 15 15 C 1.34771 * 120.62803 * 126.41375 * 14 13 12 16 16 O 1.21288 * 119.99790 * 179.97438 * 15 14 13 17 17 C 1.50695 * 120.00371 * 359.97438 * 15 14 13 18 18 H 1.09001 * 115.55679 * 34.32966 * 17 15 14 19 19 C 1.53090 * 117.51016 * 248.60976 * 17 15 14 20 20 C 1.52555 * 117.51007 * 180.11128 * 17 15 14 21 21 C 1.53873 * 120.82873 * 357.25126 * 20 17 15 22 22 C 1.54991 * 104.06610 * 192.35704 * 21 20 17 23 23 C 1.54925 * 102.81970 * 37.56576 * 22 21 20 24 24 C 1.53485 * 121.09054 * 217.88091 * 20 17 15 25 25 C 1.46996 * 118.75211 * 306.39315 * 14 13 12 26 26 H 0.96998 * 120.00241 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46472 * 301.36613 * 11 9 7 28 28 H 1.09003 * 109.46560 * 61.34300 * 11 9 7 29 29 H 1.09001 * 109.49287 * 58.58732 * 12 11 9 30 30 H 1.09004 * 109.49899 * 178.68305 * 12 11 9 31 31 H 1.09001 * 109.58579 * 174.41761 * 13 12 11 32 32 H 1.08995 * 109.58826 * 294.84578 * 13 12 11 33 33 H 1.09000 * 117.51146 * 359.97438 * 19 17 15 34 34 H 1.08999 * 117.51042 * 145.08966 * 19 17 15 35 35 H 1.09005 * 110.50701 * 311.00035 * 21 20 17 36 36 H 1.08997 * 110.51055 * 73.70897 * 21 20 17 37 37 H 1.09004 * 110.73845 * 279.23711 * 22 21 20 38 38 H 1.08995 * 110.74337 * 155.90521 * 22 21 20 39 39 H 1.08997 * 110.47933 * 203.59412 * 23 22 21 40 40 H 1.09001 * 110.47760 * 80.97086 * 23 22 21 41 41 H 1.09000 * 110.07203 * 263.31847 * 24 20 17 42 42 H 1.08995 * 110.07099 * 24.79512 * 24 20 17 43 43 H 1.09004 * 109.57815 * 293.82544 * 25 14 13 44 44 H 1.09007 * 109.62790 * 173.38404 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5567 0.8918 11 6 0.3718 -2.5824 -1.2480 12 6 -0.4192 -3.8925 -1.2311 13 6 0.5563 -5.0735 -1.2467 14 7 1.4990 -4.9231 -0.1297 15 6 1.6756 -5.9210 0.7588 16 8 2.4570 -5.7848 1.6763 17 6 0.9023 -7.2061 0.6122 18 1 0.7036 -7.5211 -0.4122 19 6 -0.1647 -7.5135 1.6661 20 6 1.1445 -8.2967 1.6511 21 6 2.1889 -8.1066 2.7650 22 6 2.3466 -9.5211 3.3788 23 6 2.2480 -10.4463 2.1401 24 6 1.1760 -9.7784 1.2522 25 6 2.2461 -3.6639 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 -0.3204 -1.7405 -1.2619 28 1 1.0009 -2.5499 -2.1376 29 1 -1.0299 -3.9369 -0.3293 30 1 -1.0626 -3.9404 -2.1096 31 1 0.0030 -6.0060 -1.1349 32 1 1.1045 -5.0822 -2.1887 33 1 -0.3069 -6.7863 2.4656 34 1 -1.0649 -8.0312 1.3351 35 1 3.1354 -7.7641 2.3467 36 1 1.8246 -7.4037 3.5142 37 1 1.5396 -9.7292 4.0813 38 1 3.3176 -9.6258 3.8627 39 1 1.9300 -11.4461 2.4352 40 1 3.2039 -10.4877 1.6180 41 1 0.2030 -10.2353 1.4329 42 1 1.4457 -9.8771 0.2007 43 1 2.9321 -3.5577 -0.8400 44 1 2.8074 -3.6660 0.9349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -47.012944 kcal Electronic energy + Delta-G solvation = -22270.183463 eV Core-core repulsion = 19186.359582 eV Total energy + Delta-G solvation = -3083.823881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51849 -39.62828 -38.06186 -35.44937 -34.98467 -33.00893 -31.99667 -29.56653 -27.58216 -26.77663 -26.00920 -24.35355 -23.28638 -21.56642 -21.48138 -20.05725 -19.29530 -18.57817 -17.93453 -16.84205 -16.58854 -16.34421 -15.91915 -15.70261 -15.15473 -15.06791 -14.64107 -14.41301 -14.22312 -13.93661 -13.75100 -13.54289 -13.28651 -13.08575 -12.87801 -12.69264 -12.60316 -11.99752 -11.96752 -11.93211 -11.85968 -11.74142 -11.59892 -11.38071 -11.27140 -11.20624 -10.88443 -10.70577 -10.45203 -10.35732 -9.46795 -8.12596 -6.28236 1.39153 1.40264 1.50452 1.56098 2.08889 2.42183 2.83338 3.13591 3.39739 3.65337 3.79075 3.92242 3.97281 4.13296 4.25968 4.30696 4.32992 4.37041 4.52630 4.61388 4.63973 4.77017 4.77641 4.80747 4.85803 4.91301 4.93878 4.97276 5.04646 5.09750 5.11816 5.14326 5.24992 5.28533 5.38100 5.46905 5.48411 5.53178 5.58278 5.59447 5.91007 6.11774 6.32527 6.60125 6.81199 7.27451 7.40025 8.91051 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.003994 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.911157 B = 7009.304973 C = 7476.036525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.111 3.889 14 N -0.606 5.606 15 C 0.527 3.473 16 O -0.587 6.587 17 C -0.185 4.185 18 H 0.152 0.848 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.082 4.082 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -20.730 -1.801 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.164 4.164 13 C -0.011 4.011 14 N -0.337 5.337 15 C 0.317 3.683 16 O -0.469 6.469 17 C -0.206 4.206 18 H 0.170 0.830 19 C -0.168 4.168 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.119 4.119 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.797 -20.531 -1.345 20.653 hybrid contribution 0.557 1.927 0.253 2.021 sum -1.241 -18.604 -1.092 18.678 Atomic orbital electron populations 1.70005 1.07094 1.27249 1.50823 1.25694 0.95715 1.02294 0.94490 0.85591 0.78565 0.79232 0.78482 1.19535 1.20814 1.19757 1.21443 0.93034 0.91984 1.51406 0.93086 1.18858 0.93117 0.91613 0.94084 0.99823 1.21424 0.98750 0.97160 0.97037 1.21902 0.97814 0.94925 1.01788 1.21982 0.90663 0.99776 0.88651 1.48345 1.42324 1.14705 1.28361 1.20481 0.82032 0.85105 0.80708 1.90626 1.39635 1.82345 1.34279 1.22353 1.05023 0.93865 0.99351 0.83010 1.23103 0.93409 1.01846 0.98480 1.21914 0.97524 0.93361 0.96895 1.21781 0.97658 0.96783 0.95627 1.22551 1.01794 0.93784 0.97979 1.22350 0.98915 0.98946 0.95440 1.21701 1.00558 0.89475 1.00190 1.21532 0.94502 0.83018 1.00126 0.92888 0.91925 0.94450 0.93858 0.89150 0.86846 0.90227 0.90656 0.84356 0.92979 0.94301 0.90789 0.91594 0.89528 0.91892 0.89226 0.90433 0.92266 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 11.31 21.45 0.24 -52.69 16 2 C 0.02 0.97 5.30 84.66 0.45 1.42 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.68 8.56 25.60 0.22 -30.46 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.21 2.25 -11.46 -0.03 2.18 16 10 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 11 C -0.11 -4.84 4.96 30.62 0.15 -4.68 16 12 C -0.13 -4.34 6.08 30.67 0.19 -4.16 16 13 C 0.11 3.20 6.30 86.36 0.54 3.74 16 14 N -0.61 -22.81 2.97 -818.72 -2.43 -25.24 16 15 C 0.53 19.44 7.48 87.66 0.66 20.10 16 16 O -0.59 -26.34 13.12 -3.05 -0.04 -26.38 16 17 C -0.19 -4.71 4.83 -11.66 -0.06 -4.76 16 18 H 0.15 2.84 6.82 -2.39 -0.02 2.82 16 19 C -0.13 -2.93 9.94 30.48 0.30 -2.62 16 20 C -0.10 -2.22 2.45 -52.02 -0.13 -2.35 16 21 C -0.08 -2.26 4.77 31.57 0.15 -2.11 16 22 C -0.12 -2.45 6.91 31.93 0.22 -2.23 16 23 C -0.12 -1.86 6.84 31.72 0.22 -1.64 16 24 C -0.08 -1.28 6.55 31.23 0.20 -1.08 16 25 C 0.13 6.00 5.66 86.35 0.49 6.49 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.11 2.39 5.67 -2.39 -0.01 2.37 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.75 6.97 -2.38 -0.02 1.74 16 36 H 0.04 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 44 H 0.05 2.53 7.01 -2.38 -0.02 2.52 16 Total: -1.00 -69.19 337.69 4.33 -64.86 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.96 Total: 15.33 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.58 Total: -22.16 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.19 Total: -77.93 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.19 4.33 -64.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.846 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds