Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48500 * 109.47023 * 269.99340 * 3 2 1 5 5 H 1.48495 * 109.47220 * 29.99807 * 3 2 1 6 6 H 1.48509 * 109.47401 * 149.99682 * 3 2 1 7 7 C 1.37876 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00232 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49753 * 60.05975 * 9 7 2 11 11 C 1.53041 * 109.49437 * 299.99685 * 9 7 2 12 12 C 1.53036 * 109.53807 * 178.68398 * 11 9 7 13 13 C 1.53190 * 109.31273 * 61.36337 * 12 11 9 14 14 N 1.46923 * 108.77809 * 305.36826 * 13 12 11 15 15 C 1.34784 * 120.62964 * 233.58685 * 14 13 12 16 16 O 1.21283 * 119.99649 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99988 * 359.97438 * 15 14 13 18 18 H 1.08998 * 115.55751 * 34.28149 * 17 15 14 19 19 C 1.53089 * 117.50931 * 248.50032 * 17 15 14 20 20 C 1.52560 * 117.50899 * 179.97438 * 17 15 14 21 21 C 1.53873 * 120.82223 * 357.25610 * 20 17 15 22 22 C 1.54989 * 104.06159 * 192.36245 * 21 20 17 23 23 C 1.54935 * 102.82145 * 37.56233 * 22 21 20 24 24 C 1.53477 * 121.08882 * 217.88102 * 20 17 15 25 25 C 1.46927 * 118.73985 * 53.85904 * 14 13 12 26 26 H 0.97000 * 120.00336 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46207 * 58.65912 * 11 9 7 28 28 H 1.09009 * 109.44893 * 298.69641 * 11 9 7 29 29 H 1.09001 * 109.49825 * 301.41219 * 12 11 9 30 30 H 1.09001 * 109.52568 * 181.32976 * 12 11 9 31 31 H 1.09007 * 109.58645 * 185.57808 * 13 12 11 32 32 H 1.08998 * 109.70504 * 65.22672 * 13 12 11 33 33 H 1.08998 * 117.50810 * 359.97438 * 19 17 15 34 34 H 1.09006 * 117.51057 * 145.08855 * 19 17 15 35 35 H 1.09000 * 110.51021 * 311.00463 * 21 20 17 36 36 H 1.08997 * 110.51313 * 73.71877 * 21 20 17 37 37 H 1.08995 * 110.74437 * 279.23023 * 22 21 20 38 38 H 1.09000 * 110.89735 * 155.96345 * 22 21 20 39 39 H 1.08999 * 110.48050 * 203.59325 * 23 22 21 40 40 H 1.09000 * 110.47708 * 80.96458 * 23 22 21 41 41 H 1.09002 * 110.07188 * 263.30763 * 24 20 17 42 42 H 1.08996 * 110.07084 * 24.83787 * 24 20 17 43 43 H 1.08998 * 109.58645 * 65.92691 * 25 14 13 44 44 H 1.09001 * 109.58579 * 186.35848 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5581 -0.8900 11 6 0.3706 -2.5806 1.2496 12 6 -0.4198 -3.8910 1.2342 13 6 0.5562 -5.0716 1.2528 14 7 1.4998 -4.9228 0.1365 15 6 1.6778 -5.9222 -0.7501 16 8 2.4594 -5.7869 -1.6676 17 6 0.9057 -7.2078 -0.6013 18 1 -0.1051 -7.1062 -0.2065 19 6 1.6919 -8.4646 -0.2193 20 6 1.1508 -8.3008 -1.6370 21 6 2.1040 -8.0650 -2.8217 22 6 1.8234 -9.2556 -3.7735 23 6 0.2913 -9.4458 -3.6439 24 6 0.0008 -9.1773 -2.1515 25 6 2.2502 -3.6661 0.0085 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3219 -1.7389 1.2613 28 1 0.9991 -2.5461 2.1396 29 1 -1.0297 -3.9374 0.3320 30 1 -1.0644 -3.9380 2.1119 31 1 0.0034 -6.0045 1.1422 32 1 1.1038 -5.0809 2.1953 33 1 2.7675 -8.3615 -0.0761 34 1 1.1982 -9.1902 0.4272 35 1 1.8746 -7.1201 -3.3142 36 1 3.1410 -8.0802 -2.4864 37 1 2.3528 -10.1486 -3.4412 38 1 2.0960 -9.0061 -4.7990 39 1 0.0096 -10.4646 -3.9100 40 1 -0.2366 -8.7270 -4.2706 41 1 -0.0281 -10.1176 -1.6010 42 1 -0.9477 -8.6511 -2.0439 43 1 2.9328 -3.5606 0.8517 44 1 2.8154 -3.6713 -0.9235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = -31.321687 kcal Electronic energy + Delta-G solvation = -22266.734780 eV Core-core repulsion = 19183.591323 eV Total energy + Delta-G solvation = -3083.143457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23225 -38.36463 -36.51902 -34.15601 -33.38708 -31.29083 -30.20603 -28.68391 -26.11263 -25.11472 -24.78856 -22.97239 -21.65314 -20.72607 -19.88033 -18.81721 -18.01781 -16.88228 -16.20278 -15.55436 -15.40610 -14.78098 -14.62290 -14.24077 -13.72975 -13.50512 -13.33077 -13.03301 -12.74967 -12.63255 -12.36606 -12.07369 -11.96241 -11.95102 -11.15896 -11.01925 -10.98847 -10.88975 -10.81076 -10.72984 -10.55683 -10.33084 -10.22021 -9.95517 -9.78593 -9.62850 -9.42656 -9.07866 -8.79585 -8.38187 -7.84771 -6.01600 -4.08762 2.90416 3.30198 3.36665 3.39505 3.52418 3.87623 4.40554 4.43801 4.61126 4.78839 4.88890 5.00696 5.13422 5.21130 5.28542 5.46135 5.49727 5.61560 5.65571 5.67388 5.73363 5.76814 5.82250 5.88170 5.97342 6.01586 6.11928 6.13957 6.20863 6.34489 6.39846 6.42169 6.49772 6.59153 6.67814 6.82377 7.00267 7.18801 7.34705 7.69408 7.92980 8.06294 8.08224 8.38372 8.72473 8.95064 9.56123 11.03845 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.004047 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.515969 B = 6917.191031 C = 7292.947444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.600 5.600 15 C 0.537 3.463 16 O -0.547 6.547 17 C -0.179 4.179 18 H 0.121 0.879 19 C -0.143 4.143 20 C -0.096 4.096 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.089 4.089 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 -17.975 -0.027 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.331 5.331 15 C 0.325 3.675 16 O -0.426 6.426 17 C -0.200 4.200 18 H 0.138 0.862 19 C -0.180 4.180 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.126 4.126 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.155 -17.753 -0.499 17.797 hybrid contribution 0.220 1.072 0.299 1.134 sum -0.935 -16.681 -0.199 16.708 Atomic orbital electron populations 1.69870 1.05904 1.26456 1.50576 1.24933 0.94850 0.99071 0.94942 0.86582 0.79852 0.83340 0.78157 1.20661 1.21253 1.19878 1.21090 0.92999 0.90331 1.50865 0.92501 1.19045 0.92884 0.91143 0.94776 0.95288 1.21626 0.99445 0.95379 0.98561 1.22011 0.97677 0.96787 1.00900 1.21748 0.91352 0.98992 0.89214 1.48245 1.41846 1.15972 1.27053 1.19541 0.82283 0.83876 0.81775 1.90637 1.37984 1.81465 1.32466 1.22351 1.01108 0.89597 1.06921 0.86151 1.23000 1.00105 0.97183 0.97732 1.21752 0.98951 0.98084 0.90843 1.21849 0.97935 0.98183 0.93279 1.22567 0.95623 0.98710 0.99656 1.22337 0.96697 1.01017 0.95922 1.21665 0.96630 0.98348 0.95951 1.22077 0.94996 0.81943 1.01359 0.92990 0.88658 0.94617 0.92434 0.92528 0.91040 0.92067 0.88408 0.88164 0.89768 0.91570 0.91899 0.91708 0.91873 0.91546 0.91487 0.91506 0.92799 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.31 55.43 0.63 -24.45 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 1.01 2.27 -91.43 -0.21 0.80 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 13 C 0.11 1.74 6.34 -3.71 -0.02 1.72 16 14 N -0.60 -11.31 2.97 -172.50 -0.51 -11.82 16 15 C 0.54 9.86 7.48 -10.98 -0.08 9.78 16 16 O -0.55 -11.60 13.12 5.56 0.07 -11.52 16 17 C -0.18 -2.48 5.00 -91.95 -0.46 -2.94 16 18 H 0.12 1.49 6.56 -51.93 -0.34 1.15 16 19 C -0.14 -1.65 9.94 -26.88 -0.27 -1.91 16 20 C -0.10 -1.20 2.45 -154.22 -0.38 -1.58 16 21 C -0.08 -1.03 4.77 -25.23 -0.12 -1.15 16 22 C -0.13 -1.37 6.91 -24.66 -0.17 -1.54 16 23 C -0.12 -1.19 6.84 -24.98 -0.17 -1.36 16 24 C -0.09 -0.90 6.55 -25.76 -0.17 -1.07 16 25 C 0.12 2.58 5.68 -3.48 -0.02 2.56 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.10 2.44 6.04 -51.93 -0.31 2.12 16 28 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.92 5.51 -51.93 -0.29 0.63 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.38 6.97 -51.93 -0.36 1.02 16 36 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -29.46 337.51 -10.04 -39.50 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.54 Total: 1.68 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.75 Total: -14.65 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.12 Total: -36.27 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.46 -10.04 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.178 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds