Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48500 * 109.47023 * 269.99340 * 3 2 1 5 5 H 1.48495 * 109.47220 * 29.99807 * 3 2 1 6 6 H 1.48509 * 109.47401 * 149.99682 * 3 2 1 7 7 C 1.37876 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00232 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49753 * 60.05975 * 9 7 2 11 11 C 1.53041 * 109.49437 * 299.99685 * 9 7 2 12 12 C 1.53036 * 109.53807 * 178.68398 * 11 9 7 13 13 C 1.53190 * 109.31273 * 61.36337 * 12 11 9 14 14 N 1.46923 * 108.77809 * 305.36826 * 13 12 11 15 15 C 1.34784 * 120.62964 * 233.58685 * 14 13 12 16 16 O 1.21283 * 119.99649 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99988 * 359.97438 * 15 14 13 18 18 H 1.08998 * 115.55751 * 34.28149 * 17 15 14 19 19 C 1.53089 * 117.50931 * 248.50032 * 17 15 14 20 20 C 1.52560 * 117.50899 * 179.97438 * 17 15 14 21 21 C 1.53873 * 120.82223 * 357.25610 * 20 17 15 22 22 C 1.54989 * 104.06159 * 192.36245 * 21 20 17 23 23 C 1.54935 * 102.82145 * 37.56233 * 22 21 20 24 24 C 1.53477 * 121.08882 * 217.88102 * 20 17 15 25 25 C 1.46927 * 118.73985 * 53.85904 * 14 13 12 26 26 H 0.97000 * 120.00336 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46207 * 58.65912 * 11 9 7 28 28 H 1.09009 * 109.44893 * 298.69641 * 11 9 7 29 29 H 1.09001 * 109.49825 * 301.41219 * 12 11 9 30 30 H 1.09001 * 109.52568 * 181.32976 * 12 11 9 31 31 H 1.09007 * 109.58645 * 185.57808 * 13 12 11 32 32 H 1.08998 * 109.70504 * 65.22672 * 13 12 11 33 33 H 1.08998 * 117.50810 * 359.97438 * 19 17 15 34 34 H 1.09006 * 117.51057 * 145.08855 * 19 17 15 35 35 H 1.09000 * 110.51021 * 311.00463 * 21 20 17 36 36 H 1.08997 * 110.51313 * 73.71877 * 21 20 17 37 37 H 1.08995 * 110.74437 * 279.23023 * 22 21 20 38 38 H 1.09000 * 110.89735 * 155.96345 * 22 21 20 39 39 H 1.08999 * 110.48050 * 203.59325 * 23 22 21 40 40 H 1.09000 * 110.47708 * 80.96458 * 23 22 21 41 41 H 1.09002 * 110.07188 * 263.30763 * 24 20 17 42 42 H 1.08996 * 110.07084 * 24.83787 * 24 20 17 43 43 H 1.08998 * 109.58645 * 65.92691 * 25 14 13 44 44 H 1.09001 * 109.58579 * 186.35848 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5581 -0.8900 11 6 0.3706 -2.5806 1.2496 12 6 -0.4198 -3.8910 1.2342 13 6 0.5562 -5.0716 1.2528 14 7 1.4998 -4.9228 0.1365 15 6 1.6778 -5.9222 -0.7501 16 8 2.4594 -5.7869 -1.6676 17 6 0.9057 -7.2078 -0.6013 18 1 -0.1051 -7.1062 -0.2065 19 6 1.6919 -8.4646 -0.2193 20 6 1.1508 -8.3008 -1.6370 21 6 2.1040 -8.0650 -2.8217 22 6 1.8234 -9.2556 -3.7735 23 6 0.2913 -9.4458 -3.6439 24 6 0.0008 -9.1773 -2.1515 25 6 2.2502 -3.6661 0.0085 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3219 -1.7389 1.2613 28 1 0.9991 -2.5461 2.1396 29 1 -1.0297 -3.9374 0.3320 30 1 -1.0644 -3.9380 2.1119 31 1 0.0034 -6.0045 1.1422 32 1 1.1038 -5.0809 2.1953 33 1 2.7675 -8.3615 -0.0761 34 1 1.1982 -9.1902 0.4272 35 1 1.8746 -7.1201 -3.3142 36 1 3.1410 -8.0802 -2.4864 37 1 2.3528 -10.1486 -3.4412 38 1 2.0960 -9.0061 -4.7990 39 1 0.0096 -10.4646 -3.9100 40 1 -0.2366 -8.7270 -4.2706 41 1 -0.0281 -10.1176 -1.6010 42 1 -0.9477 -8.6511 -2.0439 43 1 2.9328 -3.5606 0.8517 44 1 2.8154 -3.6713 -0.9235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = -46.535798 kcal Electronic energy + Delta-G solvation = -22267.394514 eV Core-core repulsion = 19183.591323 eV Total energy + Delta-G solvation = -3083.803191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51346 -39.62221 -38.05458 -35.44710 -34.98225 -33.00575 -31.98316 -29.57198 -27.58350 -26.77599 -26.00469 -24.34413 -23.30105 -21.57884 -21.40552 -20.12407 -19.31855 -18.54222 -17.94140 -16.82791 -16.67315 -16.29611 -15.98060 -15.61414 -15.09812 -15.06441 -14.69335 -14.49232 -14.17032 -13.96467 -13.63812 -13.54824 -13.35322 -13.06035 -12.89648 -12.69504 -12.58056 -12.00157 -11.96403 -11.94112 -11.86108 -11.73492 -11.61183 -11.38965 -11.28052 -11.19003 -10.87409 -10.69733 -10.44784 -10.36726 -9.46066 -8.12492 -6.28199 1.39335 1.40312 1.50422 1.56965 2.10770 2.42198 2.82446 3.13736 3.40344 3.64061 3.78090 3.94030 3.97679 4.11533 4.25245 4.31490 4.34384 4.36684 4.52801 4.60418 4.63237 4.76777 4.77889 4.81109 4.85898 4.90904 4.92970 4.97938 5.06182 5.09946 5.11251 5.14012 5.24494 5.28009 5.38111 5.46286 5.48043 5.52823 5.58245 5.59397 5.90992 6.11447 6.32553 6.60375 6.81226 7.27918 7.40077 8.91139 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.004047 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.515969 B = 6917.191031 C = 7292.947444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.016 1.016 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.111 3.889 14 N -0.606 5.606 15 C 0.527 3.473 16 O -0.587 6.587 17 C -0.191 4.191 18 H 0.145 0.855 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.083 4.083 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -20.571 1.521 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.010 4.010 14 N -0.337 5.337 15 C 0.317 3.683 16 O -0.469 6.469 17 C -0.212 4.212 18 H 0.162 0.838 19 C -0.155 4.155 20 C -0.103 4.103 21 C -0.117 4.117 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.121 4.121 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.084 -20.368 1.066 20.502 hybrid contribution 0.549 1.915 -0.254 2.009 sum -1.535 -18.452 0.813 18.534 Atomic orbital electron populations 1.70006 1.07114 1.27251 1.50843 1.25694 0.95708 1.02295 0.94481 0.85593 0.78870 0.79300 0.78119 1.20570 1.20373 1.19148 1.21451 0.93055 0.91990 1.51382 0.93055 1.18943 0.93083 0.91631 0.94055 0.99826 1.21419 0.98748 0.97120 0.97059 1.21921 0.97846 0.95034 1.01782 1.21975 0.90644 0.99632 0.88759 1.48333 1.42225 1.14838 1.28327 1.20462 0.82010 0.85142 0.80671 1.90625 1.39888 1.82413 1.33954 1.22344 1.01780 0.87689 1.09357 0.83767 1.23132 0.99557 0.95627 0.97169 1.21929 0.99690 0.97811 0.90835 1.21760 0.97346 0.97816 0.94810 1.22544 0.96933 0.97721 0.98805 1.22362 0.95395 1.02216 0.95917 1.21700 0.95437 0.98890 0.96034 1.21608 0.94436 0.83030 1.00126 0.92890 0.91930 0.94418 0.93890 0.89117 0.86906 0.90208 0.89581 0.84226 0.93695 0.93520 0.90291 0.91825 0.89414 0.92508 0.88844 0.91136 0.92224 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.03 11.31 21.45 0.24 -52.79 16 2 C 0.02 0.98 5.30 84.66 0.45 1.42 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -30.70 8.56 25.60 0.22 -30.48 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.19 2.27 -11.32 -0.03 2.17 16 10 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 11 C -0.11 -4.83 4.96 30.62 0.15 -4.68 16 12 C -0.13 -4.40 6.08 30.67 0.19 -4.22 16 13 C 0.11 3.23 6.34 86.36 0.55 3.78 16 14 N -0.61 -22.83 2.97 -818.06 -2.43 -25.26 16 15 C 0.53 19.46 7.48 87.65 0.66 20.11 16 16 O -0.59 -26.29 13.12 -3.04 -0.04 -26.33 16 17 C -0.19 -4.87 5.00 -11.66 -0.06 -4.92 16 18 H 0.14 2.97 6.56 -2.39 -0.02 2.95 16 19 C -0.12 -2.31 9.94 30.50 0.30 -2.00 16 20 C -0.10 -2.34 2.45 -52.00 -0.13 -2.47 16 21 C -0.08 -2.22 4.77 31.57 0.15 -2.07 16 22 C -0.12 -2.47 6.91 31.94 0.22 -2.25 16 23 C -0.12 -2.06 6.84 31.73 0.22 -1.85 16 24 C -0.08 -1.40 6.55 31.23 0.20 -1.19 16 25 C 0.13 5.99 5.68 86.51 0.49 6.48 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 28 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.11 2.39 5.51 -2.38 -0.01 2.38 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.04 1.58 6.97 -2.39 -0.02 1.57 16 36 H 0.05 1.43 8.00 -2.39 -0.02 1.41 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.05 2.55 7.00 -2.39 -0.02 2.53 16 Total: -1.00 -69.23 337.51 4.35 -64.88 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.96 Total: 15.38 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.59 Total: -22.18 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.18 Total: -78.05 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.04 Total: -26.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.23 4.35 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.343 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds