Wall clock time and date at job start Mon Mar 30 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34952 * 126.03911 * 2 1 4 4 C 1.35314 * 107.74570 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.03583 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47235 * 89.99830 * 5 4 3 7 7 O 1.21283 * 120.00281 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99929 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.63029 * 359.97438 * 8 6 5 10 10 C 1.53200 * 108.77279 * 126.41292 * 9 8 6 11 11 C 1.53039 * 109.31160 * 54.63574 * 10 9 8 12 12 C 1.53046 * 109.52798 * 298.64112 * 11 10 9 13 13 H 1.08994 * 109.49581 * 301.40708 * 12 11 10 14 14 C 1.50700 * 109.49577 * 181.31010 * 12 11 10 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99871 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99744 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47288 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47048 * 119.99820 * 18 16 14 21 21 H 1.48497 * 109.47251 * 239.99966 * 18 16 14 22 22 C 1.46928 * 120.63179 * 180.02562 * 8 6 5 23 23 C 1.39863 * 107.92202 * 0.26141 * 4 3 2 24 24 N 1.30838 * 108.20492 * 359.55754 * 23 4 3 25 25 H 1.08998 * 109.47280 * 89.99819 * 1 2 3 26 26 H 1.09001 * 109.46807 * 210.00223 * 1 2 3 27 27 H 1.09001 * 109.46967 * 329.99524 * 1 2 3 28 28 H 1.07999 * 126.12349 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47219 * 329.99475 * 5 4 3 30 30 H 1.09001 * 109.46803 * 209.99596 * 5 4 3 31 31 H 1.08998 * 109.58425 * 6.63242 * 9 8 6 32 32 H 1.08995 * 109.70793 * 246.26860 * 9 8 6 33 33 H 1.08997 * 109.49280 * 294.68615 * 10 9 8 34 34 H 1.08996 * 109.52417 * 174.60413 * 10 9 8 35 35 H 1.09002 * 109.46050 * 58.65698 * 11 10 9 36 36 H 1.09004 * 109.46034 * 178.62914 * 11 10 9 37 37 H 0.97002 * 119.99462 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58766 * 353.37877 * 22 8 6 39 39 H 1.08998 * 109.58326 * 113.79952 * 22 8 6 40 40 H 1.08001 * 125.90174 * 179.73844 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8373 1.4207 7 8 4.5361 1.3775 2.3424 8 7 6.2532 2.6094 1.6672 9 6 7.0392 3.1731 0.5612 10 6 7.1495 4.6885 0.7569 11 6 7.7213 4.9791 2.1464 12 6 6.7781 4.4211 3.2147 13 1 5.7933 4.8748 3.1033 14 6 7.3257 4.7358 4.5830 15 1 8.2535 5.2797 4.6814 16 6 6.6421 4.3292 5.7093 17 7 5.5121 3.6672 5.5895 18 14 7.3205 4.7198 7.4054 19 1 8.5956 5.4685 7.2682 20 1 6.3387 5.5459 8.1529 21 1 7.5667 3.4549 8.1434 22 6 6.6641 2.9025 3.0471 23 6 3.5346 -0.7321 -0.0070 24 7 2.2891 -1.1328 -0.0006 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9281 2.1193 0.0004 29 1 4.5441 2.4805 -0.5135 30 1 5.5820 1.0345 -0.5146 31 1 6.5415 2.9622 -0.3854 32 1 8.0358 2.7319 0.5562 33 1 6.1611 5.1395 0.6687 34 1 7.8095 5.1069 -0.0029 35 1 8.6990 4.5069 2.2427 36 1 7.8236 6.0562 2.2790 37 1 5.0314 3.3809 6.3819 38 1 5.9190 2.5130 3.7408 39 1 7.6301 2.4389 3.2469 40 1 4.4053 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:10 Heat of formation + Delta-G solvation = 37.512929 kcal Electronic energy + Delta-G solvation = -21668.429977 eV Core-core repulsion = 18484.731069 eV Total energy + Delta-G solvation = -3183.698908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07261 -39.17905 -36.58837 -33.57270 -33.27699 -31.80711 -31.40319 -29.74856 -28.22066 -25.97623 -24.96613 -23.94642 -21.77158 -20.97572 -20.55859 -19.46979 -18.07948 -16.70076 -16.67064 -15.99531 -15.28302 -14.87493 -14.77006 -14.49453 -14.22769 -13.63019 -13.37712 -13.21398 -12.93551 -12.69512 -12.59886 -12.43275 -12.30220 -12.03025 -11.84771 -11.42627 -10.98491 -10.87732 -10.49348 -10.45102 -10.31071 -10.20344 -9.84743 -9.26830 -9.18539 -9.06803 -8.85274 -8.40573 -8.15840 -7.63496 -5.97113 -4.05872 2.02717 2.62714 2.92986 3.31214 3.39761 3.42118 3.42792 3.96079 4.45066 4.56167 4.94991 5.05714 5.17200 5.23153 5.27593 5.30924 5.33267 5.44643 5.50774 5.56851 5.72757 5.78771 5.92804 6.05802 6.21249 6.27308 6.35059 6.63507 6.72118 6.77443 6.90819 7.01347 7.11278 7.22754 7.39137 7.69161 7.81928 7.92243 8.04720 8.37601 8.43626 8.97275 9.07122 9.59762 11.08001 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.004555 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.080522 B = 6145.399770 C = 7046.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.380 5.380 3 C 0.067 3.933 4 C -0.211 4.211 5 C -0.061 4.061 6 C 0.503 3.497 7 O -0.531 6.531 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.134 4.134 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.113 3.887 23 C 0.063 3.937 24 N -0.304 5.304 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.039 0.961 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -3.355 -15.207 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.162 5.162 3 C -0.079 4.079 4 C -0.223 4.223 5 C -0.102 4.102 6 C 0.290 3.710 7 O -0.407 6.407 8 N -0.344 5.344 9 C -0.015 4.015 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.007 4.007 23 C -0.123 4.123 24 N -0.125 5.125 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.188 0.812 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.767 -4.701 -14.579 16.368 hybrid contribution 0.920 1.040 1.002 1.713 sum -4.848 -3.661 -13.577 14.874 Atomic orbital electron populations 1.21789 0.74560 1.04468 1.02864 1.48320 1.06400 1.03893 1.57632 1.22224 0.90866 0.93205 1.01596 1.19485 0.93622 0.93672 1.15502 1.19972 0.95376 0.99319 0.95571 1.20525 0.80555 0.79050 0.90910 1.90711 1.52658 1.51158 1.46182 1.48521 1.27924 1.49091 1.08886 1.21616 0.95846 0.94396 0.89616 1.21947 1.01168 0.95163 0.98946 1.21622 0.99461 1.00147 0.93591 1.18971 0.94996 0.91155 0.92817 0.95435 1.21129 1.08147 1.36474 0.90183 0.92377 1.25054 0.94787 0.94948 0.99242 1.69909 1.14970 1.37533 1.29335 0.86558 0.78997 0.78086 0.84498 1.19782 1.21048 1.20992 1.22221 1.00189 0.99000 0.79289 1.23674 0.95076 0.94471 0.99121 1.77271 1.01667 1.08334 1.25251 0.91090 0.89506 0.89585 0.81218 0.89041 0.88848 0.91066 0.92187 0.92225 0.92329 0.93234 0.93154 0.92776 0.86088 0.94275 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 11.47 59.84 0.69 1.61 16 2 N -0.38 -5.24 4.01 -68.17 -0.27 -5.51 16 3 C 0.07 0.93 11.40 -17.22 -0.20 0.74 16 4 C -0.21 -3.16 4.59 -105.05 -0.48 -3.64 16 5 C -0.06 -0.85 4.53 -29.03 -0.13 -0.98 16 6 C 0.50 9.90 7.69 -10.99 -0.08 9.82 16 7 O -0.53 -13.16 15.45 5.56 0.09 -13.08 16 8 N -0.61 -12.03 2.97 -172.75 -0.51 -12.54 16 9 C 0.11 1.62 6.34 -3.70 -0.02 1.60 16 10 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C 0.04 0.98 2.25 -91.64 -0.21 0.77 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -25.96 11.40 55.43 0.63 -25.33 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C 0.11 2.76 5.40 -3.70 -0.02 2.74 16 23 C 0.06 0.95 11.96 -17.37 -0.21 0.74 16 24 N -0.30 -4.82 12.58 30.62 0.39 -4.44 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 30 H 0.09 1.06 7.94 -51.93 -0.41 0.64 16 31 H 0.07 0.81 5.93 -51.93 -0.31 0.51 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.12 3.48 5.13 -51.93 -0.27 3.21 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -34.97 328.25 -7.11 -42.08 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.00 Total: 1.47 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.35 Total: -3.98 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.23 Total: -47.82 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.97 -7.11 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.592 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds