Wall clock time and date at job start Mon Mar 30 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34952 * 126.03911 * 2 1 4 4 C 1.35314 * 107.74570 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.03583 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47235 * 89.99830 * 5 4 3 7 7 O 1.21283 * 120.00281 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99929 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.63029 * 359.97438 * 8 6 5 10 10 C 1.53200 * 108.77279 * 126.41292 * 9 8 6 11 11 C 1.53039 * 109.31160 * 54.63574 * 10 9 8 12 12 C 1.53046 * 109.52798 * 298.64112 * 11 10 9 13 13 H 1.08994 * 109.49581 * 301.40708 * 12 11 10 14 14 C 1.50700 * 109.49577 * 181.31010 * 12 11 10 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99871 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99744 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47288 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47048 * 119.99820 * 18 16 14 21 21 H 1.48497 * 109.47251 * 239.99966 * 18 16 14 22 22 C 1.46928 * 120.63179 * 180.02562 * 8 6 5 23 23 C 1.39863 * 107.92202 * 0.26141 * 4 3 2 24 24 N 1.30838 * 108.20492 * 359.55754 * 23 4 3 25 25 H 1.08998 * 109.47280 * 89.99819 * 1 2 3 26 26 H 1.09001 * 109.46807 * 210.00223 * 1 2 3 27 27 H 1.09001 * 109.46967 * 329.99524 * 1 2 3 28 28 H 1.07999 * 126.12349 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47219 * 329.99475 * 5 4 3 30 30 H 1.09001 * 109.46803 * 209.99596 * 5 4 3 31 31 H 1.08998 * 109.58425 * 6.63242 * 9 8 6 32 32 H 1.08995 * 109.70793 * 246.26860 * 9 8 6 33 33 H 1.08997 * 109.49280 * 294.68615 * 10 9 8 34 34 H 1.08996 * 109.52417 * 174.60413 * 10 9 8 35 35 H 1.09002 * 109.46050 * 58.65698 * 11 10 9 36 36 H 1.09004 * 109.46034 * 178.62914 * 11 10 9 37 37 H 0.97002 * 119.99462 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58766 * 353.37877 * 22 8 6 39 39 H 1.08998 * 109.58326 * 113.79952 * 22 8 6 40 40 H 1.08001 * 125.90174 * 179.73844 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8373 1.4207 7 8 4.5361 1.3775 2.3424 8 7 6.2532 2.6094 1.6672 9 6 7.0392 3.1731 0.5612 10 6 7.1495 4.6885 0.7569 11 6 7.7213 4.9791 2.1464 12 6 6.7781 4.4211 3.2147 13 1 5.7933 4.8748 3.1033 14 6 7.3257 4.7358 4.5830 15 1 8.2535 5.2797 4.6814 16 6 6.6421 4.3292 5.7093 17 7 5.5121 3.6672 5.5895 18 14 7.3205 4.7198 7.4054 19 1 8.5956 5.4685 7.2682 20 1 6.3387 5.5459 8.1529 21 1 7.5667 3.4549 8.1434 22 6 6.6641 2.9025 3.0471 23 6 3.5346 -0.7321 -0.0070 24 7 2.2891 -1.1328 -0.0006 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9281 2.1193 0.0004 29 1 4.5441 2.4805 -0.5135 30 1 5.5820 1.0345 -0.5146 31 1 6.5415 2.9622 -0.3854 32 1 8.0358 2.7319 0.5562 33 1 6.1611 5.1395 0.6687 34 1 7.8095 5.1069 -0.0029 35 1 8.6990 4.5069 2.2427 36 1 7.8236 6.0562 2.2790 37 1 5.0314 3.3809 6.3819 38 1 5.9190 2.5130 3.7408 39 1 7.6301 2.4389 3.2469 40 1 4.4053 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:10 Heat of formation + Delta-G solvation = 14.023928 kcal Electronic energy + Delta-G solvation = -21669.448536 eV Core-core repulsion = 18484.731069 eV Total energy + Delta-G solvation = -3184.717467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.13247 -40.70363 -38.21091 -35.27757 -34.48327 -33.42009 -32.60828 -31.43165 -29.29143 -27.27981 -26.67629 -25.42983 -23.35850 -21.99850 -21.86674 -20.92790 -19.55572 -18.49488 -17.82465 -17.60696 -16.64016 -16.35544 -16.15231 -16.08289 -15.30077 -15.11609 -14.76842 -14.56303 -14.34053 -14.08147 -13.93236 -13.67612 -13.43487 -13.33935 -13.16640 -12.91386 -12.65021 -12.57651 -12.24208 -12.17922 -11.74382 -11.57699 -11.50023 -11.03976 -10.89647 -10.57026 -10.46214 -10.30863 -9.27546 -9.25577 -8.10394 -6.27242 0.98242 1.38505 1.40371 1.52201 1.71472 1.81031 1.94779 2.40190 2.54550 3.18389 3.67122 3.97105 4.01577 4.15403 4.26954 4.32369 4.34785 4.44072 4.45340 4.53277 4.67036 4.68416 4.75582 4.86148 4.91038 4.92803 4.98595 5.16761 5.23087 5.32081 5.36686 5.43703 5.58056 5.72462 5.75721 5.95127 6.05169 6.17623 6.36755 6.75499 6.86151 6.87042 7.42556 7.56146 8.92714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.004555 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.080522 B = 6145.399770 C = 7046.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.062 3.938 4 C -0.235 4.235 5 C -0.043 4.043 6 C 0.494 3.506 7 O -0.595 6.595 8 N -0.614 5.614 9 C 0.103 3.897 10 C -0.127 4.127 11 C -0.106 4.106 12 C 0.038 3.962 13 H -0.014 1.014 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.009 3.991 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.126 3.874 23 C 0.049 3.951 24 N -0.337 5.337 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.195 0.805 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -2.466 -17.697 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.085 4.085 4 C -0.247 4.247 5 C -0.084 4.084 6 C 0.284 3.716 7 O -0.476 6.476 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.165 4.165 11 C -0.144 4.144 12 C 0.019 3.981 13 H 0.004 0.996 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.183 1.183 20 H -0.208 1.208 21 H -0.210 1.210 22 C 0.003 3.997 23 C -0.136 4.136 24 N -0.159 5.159 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.212 0.788 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.820 -3.795 -17.121 18.187 hybrid contribution 0.584 0.780 1.780 2.030 sum -4.235 -3.015 -15.341 16.198 Atomic orbital electron populations 1.22151 0.72217 1.05436 1.04766 1.48728 1.07874 1.03366 1.56633 1.22737 0.90966 0.94329 1.00445 1.19746 0.94509 0.93787 1.16625 1.19970 0.96053 1.01058 0.91298 1.21662 0.79421 0.77594 0.92916 1.90683 1.54606 1.53524 1.48749 1.48566 1.28638 1.49260 1.08195 1.22031 0.96667 0.93617 0.89585 1.21920 1.01558 0.95922 0.97090 1.21520 0.98468 0.99698 0.94711 1.18903 0.93995 0.91397 0.93786 0.99553 1.21596 1.08058 1.35874 0.91851 0.92124 1.25887 0.95010 0.94858 1.03248 1.70113 1.16508 1.38948 1.29904 0.85541 0.78765 0.77816 0.79773 1.18322 1.20813 1.21025 1.21583 0.97986 0.98322 0.81786 1.24052 0.95474 0.95199 0.98907 1.77195 1.02404 1.09836 1.26498 0.88683 0.89521 0.87697 0.78800 0.85780 0.85366 0.86272 0.90511 0.92805 0.87832 0.92747 0.93275 0.93327 0.91028 0.95249 0.78902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 11.47 127.77 1.47 2.99 16 2 N -0.38 -10.19 4.01 -369.57 -1.48 -11.67 16 3 C 0.06 1.64 11.40 83.54 0.95 2.59 16 4 C -0.23 -6.67 4.59 -20.14 -0.09 -6.76 16 5 C -0.04 -1.07 4.53 29.10 0.13 -0.94 16 6 C 0.49 19.19 7.69 87.66 0.67 19.86 16 7 O -0.60 -30.62 15.45 -3.04 -0.05 -30.67 16 8 N -0.61 -23.67 2.97 -818.86 -2.43 -26.10 16 9 C 0.10 2.64 6.34 86.36 0.55 3.19 16 10 C -0.13 -3.48 6.08 30.67 0.19 -3.29 16 11 C -0.11 -4.03 5.11 30.62 0.16 -3.87 16 12 C 0.04 1.94 2.25 -11.46 -0.03 1.92 16 13 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 14 C -0.54 -29.83 8.56 25.60 0.22 -29.61 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.52 5.30 84.66 0.45 0.97 16 17 N -0.92 -56.74 11.40 21.45 0.24 -56.49 16 18 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 C 0.13 6.34 5.40 86.37 0.47 6.81 16 23 C 0.05 1.45 11.96 85.23 1.02 2.47 16 24 N -0.34 -10.60 12.58 -57.03 -0.72 -11.32 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.12 2.28 7.69 -2.39 -0.02 2.27 16 30 H 0.13 2.29 7.94 -2.39 -0.02 2.27 16 31 H 0.12 1.98 5.93 -2.39 -0.01 1.97 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.07 4.37 5.13 -2.39 -0.01 4.36 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -82.75 328.25 4.76 -77.99 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.02 Total: 15.01 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.15 Total: -3.69 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.39 Total: -105.59 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.05 Total: -30.67 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -82.75 4.76 -77.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.014 kcal (2) G-P(sol) polarization free energy of solvation -82.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds