Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00197 * 5 4 3 7 7 O 1.21277 * 120.00172 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99922 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63042 * 359.71560 * 8 6 5 10 10 C 1.52766 * 109.01017 * 233.58912 * 9 8 6 11 11 C 1.53043 * 109.37859 * 305.58925 * 10 9 8 12 12 C 1.53034 * 109.53972 * 61.24098 * 11 10 9 13 13 H 1.08999 * 109.50321 * 58.58694 * 12 11 10 14 14 C 1.50707 * 109.52400 * 178.66929 * 12 11 10 15 15 H 1.07998 * 119.99651 * 359.85098 * 14 12 11 16 16 C 1.37875 * 119.99742 * 179.85108 * 14 12 11 17 17 N 1.31515 * 120.00288 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99479 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47405 * 60.00644 * 18 16 14 20 20 H 1.48506 * 109.46692 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47460 * 299.99691 * 18 16 14 22 22 C 1.46929 * 120.63054 * 179.97438 * 8 6 5 23 23 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 4 3 25 25 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 26 26 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 27 27 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 28 28 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 29 29 H 1.09002 * 109.47285 * 209.99879 * 5 4 3 30 30 H 1.08996 * 109.47189 * 329.99836 * 5 4 3 31 31 H 1.08997 * 109.59065 * 353.41906 * 9 8 6 32 32 H 1.09001 * 109.59042 * 113.84808 * 9 8 6 33 33 H 1.08998 * 109.56668 * 185.55146 * 10 9 8 34 34 H 1.09004 * 109.36028 * 65.49422 * 10 9 8 35 35 H 1.09002 * 109.46027 * 301.21586 * 11 10 9 36 36 H 1.09004 * 109.44583 * 181.25569 * 11 10 9 37 37 H 0.97002 * 119.99965 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.58274 * 246.15224 * 22 8 6 39 39 H 1.08999 * 109.58466 * 6.43771 * 22 8 6 40 40 H 1.08001 * 125.90034 * 180.14354 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 6 5.1820 1.8406 1.4073 7 8 4.5454 1.3830 2.3326 8 7 6.2592 2.6142 1.6478 9 6 7.0434 3.1715 0.5374 10 6 8.5118 2.7949 0.7270 11 6 8.9766 3.2456 2.1137 12 6 8.1509 2.5327 3.1870 13 1 8.2642 1.4543 3.0769 14 6 8.6307 2.9520 4.5528 15 1 9.4453 3.6549 4.6466 16 6 8.0298 2.4382 5.6823 17 7 7.0375 1.5826 5.5679 18 14 8.6251 2.9573 7.3751 19 1 8.4723 4.4268 7.5245 20 1 7.8210 2.2673 8.4156 21 1 10.0554 2.5899 7.5311 22 6 6.6749 2.9114 3.0253 23 6 3.5347 -0.7321 0.0008 24 7 2.2892 -1.1327 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9281 2.1194 -0.0010 29 1 5.5800 1.0333 -0.5276 30 1 4.5420 2.4793 -0.5258 31 1 6.6820 2.7633 -0.4064 32 1 6.9456 4.2571 0.5296 33 1 9.1158 3.2852 -0.0364 34 1 8.6217 1.7140 0.6399 35 1 8.8433 4.3232 2.2090 36 1 10.0303 2.9974 2.2417 37 1 6.6150 1.2209 6.3626 38 1 6.5464 3.9753 3.2242 39 1 6.0685 2.3334 3.7227 40 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = 37.851494 kcal Electronic energy + Delta-G solvation = -21654.539431 eV Core-core repulsion = 18470.855205 eV Total energy + Delta-G solvation = -3183.684227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07510 -39.18362 -36.59537 -33.57656 -33.27393 -31.80868 -31.40370 -29.75550 -28.22778 -25.97693 -24.95800 -23.94477 -21.76048 -20.97756 -20.55606 -19.47546 -18.06279 -16.71338 -16.68260 -15.97467 -15.29364 -14.90640 -14.73874 -14.47639 -14.22330 -13.63675 -13.45332 -13.18001 -12.90429 -12.72427 -12.61326 -12.40900 -12.26135 -12.08662 -11.80641 -11.44880 -10.95544 -10.86152 -10.49992 -10.44846 -10.32250 -10.18881 -9.83786 -9.26732 -9.18674 -9.05797 -8.85761 -8.38967 -8.16292 -7.63350 -5.95428 -4.04646 2.01879 2.62361 2.93668 3.33829 3.39970 3.41007 3.42238 3.96303 4.45921 4.54669 4.91384 5.03597 5.16738 5.23052 5.28478 5.31827 5.34203 5.40825 5.51517 5.57444 5.73990 5.80318 5.92598 6.06121 6.22523 6.26541 6.35934 6.64583 6.72981 6.78085 6.91086 7.02271 7.10740 7.23152 7.39447 7.69737 7.82456 7.93385 8.05778 8.37857 8.44513 8.97883 9.07176 9.60815 11.09514 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.004497 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.524244 B = 6224.308484 C = 7152.840871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.210 4.210 5 C -0.061 4.061 6 C 0.503 3.497 7 O -0.531 6.531 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.135 4.135 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.113 3.887 23 C 0.065 3.935 24 N -0.303 5.303 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.170 0.830 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.038 0.962 39 H 0.121 0.879 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 1.561 -15.150 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.082 4.082 4 C -0.222 4.222 5 C -0.103 4.103 6 C 0.290 3.710 7 O -0.407 6.407 8 N -0.344 5.344 9 C -0.014 4.014 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.007 4.007 23 C -0.121 4.121 24 N -0.124 5.124 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.187 0.813 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.139 0.861 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.407 0.197 -14.522 17.303 hybrid contribution 0.925 1.093 0.997 1.744 sum -8.482 1.290 -13.525 16.017 Atomic orbital electron populations 1.21777 0.74617 1.04399 1.02845 1.48325 1.06375 1.03925 1.57732 1.22181 0.90856 0.93134 1.02013 1.19499 0.93569 0.93741 1.15364 1.19976 0.95409 0.99267 0.95609 1.20524 0.80767 0.78835 0.90914 1.90710 1.53328 1.50809 1.45851 1.48526 1.27313 1.49706 1.08880 1.21529 0.92208 0.98141 0.89553 1.21880 0.95144 1.01313 0.98964 1.21620 0.99744 0.99826 0.93623 1.18962 0.90136 0.96045 0.92740 0.95379 1.21053 1.17887 1.26973 0.90219 0.92492 1.25048 0.94937 0.94791 0.99201 1.69887 1.22748 1.29594 1.29463 0.86673 0.78737 0.78711 0.83963 1.20272 1.21292 1.20294 1.22227 0.99835 0.99236 0.79388 1.23711 0.95083 0.94531 0.98758 1.77288 1.01686 1.08221 1.25230 0.91111 0.89499 0.89686 0.81321 0.88705 0.89162 0.91056 0.92277 0.92293 0.92156 0.93271 0.93137 0.92637 0.94338 0.86081 0.80258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.90 11.47 59.85 0.69 1.58 16 2 N -0.38 -5.18 4.01 -68.16 -0.27 -5.45 16 3 C 0.06 0.86 11.40 -17.22 -0.20 0.67 16 4 C -0.21 -3.14 4.59 -105.06 -0.48 -3.63 16 5 C -0.06 -0.85 4.53 -29.03 -0.13 -0.98 16 6 C 0.50 9.89 7.69 -10.98 -0.08 9.81 16 7 O -0.53 -13.15 15.45 5.56 0.09 -13.06 16 8 N -0.61 -12.03 2.98 -173.01 -0.52 -12.54 16 9 C 0.11 1.63 6.31 -3.93 -0.02 1.60 16 10 C -0.13 -2.11 6.07 -26.83 -0.16 -2.27 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 12 C 0.04 1.00 2.25 -91.63 -0.21 0.79 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -14.28 8.56 -34.44 -0.29 -14.58 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -26.07 11.39 55.43 0.63 -25.44 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.11 2.76 5.40 -3.69 -0.02 2.74 16 23 C 0.07 1.02 11.96 -17.37 -0.21 0.81 16 24 N -0.30 -4.87 12.58 30.62 0.39 -4.49 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.13 7.68 -51.93 -0.40 0.73 16 30 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 31 H 0.07 0.82 5.94 -51.93 -0.31 0.51 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.12 3.48 5.13 -51.93 -0.27 3.22 16 40 H 0.18 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -35.07 328.21 -7.12 -42.19 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.00 Total: 1.49 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.36 Total: -4.10 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.23 Total: -47.92 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.07 -7.12 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.043 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds