Wall clock time and date at job start Mon Mar 30 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00197 * 5 4 3 7 7 O 1.21277 * 120.00172 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99922 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63042 * 359.71560 * 8 6 5 10 10 C 1.52766 * 109.01017 * 233.58912 * 9 8 6 11 11 C 1.53043 * 109.37859 * 305.58925 * 10 9 8 12 12 C 1.53034 * 109.53972 * 61.24098 * 11 10 9 13 13 H 1.08999 * 109.50321 * 58.58694 * 12 11 10 14 14 C 1.50707 * 109.52400 * 178.66929 * 12 11 10 15 15 H 1.07998 * 119.99651 * 359.85098 * 14 12 11 16 16 C 1.37875 * 119.99742 * 179.85108 * 14 12 11 17 17 N 1.31515 * 120.00288 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99479 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47405 * 60.00644 * 18 16 14 20 20 H 1.48506 * 109.46692 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47460 * 299.99691 * 18 16 14 22 22 C 1.46929 * 120.63054 * 179.97438 * 8 6 5 23 23 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 4 3 25 25 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 26 26 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 27 27 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 28 28 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 29 29 H 1.09002 * 109.47285 * 209.99879 * 5 4 3 30 30 H 1.08996 * 109.47189 * 329.99836 * 5 4 3 31 31 H 1.08997 * 109.59065 * 353.41906 * 9 8 6 32 32 H 1.09001 * 109.59042 * 113.84808 * 9 8 6 33 33 H 1.08998 * 109.56668 * 185.55146 * 10 9 8 34 34 H 1.09004 * 109.36028 * 65.49422 * 10 9 8 35 35 H 1.09002 * 109.46027 * 301.21586 * 11 10 9 36 36 H 1.09004 * 109.44583 * 181.25569 * 11 10 9 37 37 H 0.97002 * 119.99965 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.58274 * 246.15224 * 22 8 6 39 39 H 1.08999 * 109.58466 * 6.43771 * 22 8 6 40 40 H 1.08001 * 125.90034 * 180.14354 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 6 5.1820 1.8406 1.4073 7 8 4.5454 1.3830 2.3326 8 7 6.2592 2.6142 1.6478 9 6 7.0434 3.1715 0.5374 10 6 8.5118 2.7949 0.7270 11 6 8.9766 3.2456 2.1137 12 6 8.1509 2.5327 3.1870 13 1 8.2642 1.4543 3.0769 14 6 8.6307 2.9520 4.5528 15 1 9.4453 3.6549 4.6466 16 6 8.0298 2.4382 5.6823 17 7 7.0375 1.5826 5.5679 18 14 8.6251 2.9573 7.3751 19 1 8.4723 4.4268 7.5245 20 1 7.8210 2.2673 8.4156 21 1 10.0554 2.5899 7.5311 22 6 6.6749 2.9114 3.0253 23 6 3.5347 -0.7321 0.0008 24 7 2.2892 -1.1327 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9281 2.1194 -0.0010 29 1 5.5800 1.0333 -0.5276 30 1 4.5420 2.4793 -0.5258 31 1 6.6820 2.7633 -0.4064 32 1 6.9456 4.2571 0.5296 33 1 9.1158 3.2852 -0.0364 34 1 8.6217 1.7140 0.6399 35 1 8.8433 4.3232 2.2090 36 1 10.0303 2.9974 2.2417 37 1 6.6150 1.2209 6.3626 38 1 6.5464 3.9753 3.2242 39 1 6.0685 2.3334 3.7227 40 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:11 Heat of formation + Delta-G solvation = 14.120774 kcal Electronic energy + Delta-G solvation = -21655.568473 eV Core-core repulsion = 18470.855205 eV Total energy + Delta-G solvation = -3184.713268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13283 -40.70734 -38.21913 -35.27837 -34.48129 -33.42440 -32.61067 -31.44694 -29.28532 -27.27440 -26.67583 -25.42953 -23.35588 -22.00693 -21.85595 -20.93516 -19.54228 -18.49341 -17.82470 -17.60628 -16.65727 -16.33699 -16.13204 -16.09574 -15.27982 -15.12115 -14.79863 -14.62693 -14.19138 -14.15831 -13.94128 -13.65559 -13.45167 -13.33073 -13.13903 -12.84974 -12.72982 -12.55657 -12.22981 -12.21836 -11.72775 -11.57474 -11.50625 -11.04357 -10.89769 -10.56756 -10.45307 -10.30631 -9.27496 -9.25352 -8.09544 -6.27124 0.98893 1.40049 1.41707 1.50002 1.72764 1.79953 1.94773 2.40649 2.54795 3.18665 3.66932 3.97358 4.02405 4.16252 4.26654 4.32560 4.34846 4.44181 4.45807 4.53880 4.67925 4.68162 4.75656 4.86373 4.91081 4.92839 4.99881 5.16305 5.22557 5.32036 5.36665 5.43584 5.57670 5.70932 5.75502 5.95425 6.05473 6.19815 6.36649 6.75382 6.86254 6.86984 7.42715 7.56270 8.93047 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.004497 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.524244 B = 6224.308484 C = 7152.840871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.043 4.043 6 C 0.494 3.506 7 O -0.595 6.595 8 N -0.614 5.614 9 C 0.103 3.897 10 C -0.129 4.129 11 C -0.106 4.106 12 C 0.038 3.962 13 H -0.016 1.016 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.009 3.991 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.268 1.268 22 C 0.127 3.873 23 C 0.045 3.955 24 N -0.339 5.339 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.203 0.797 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.258 0.742 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 3.536 -17.609 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.080 4.080 4 C -0.248 4.248 5 C -0.084 4.084 6 C 0.284 3.716 7 O -0.475 6.475 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.144 4.144 12 C 0.019 3.981 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.193 1.193 22 C 0.004 3.996 23 C -0.140 4.140 24 N -0.161 5.161 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.219 0.781 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.214 2.188 -17.033 19.489 hybrid contribution 0.829 0.477 1.761 2.004 sum -8.385 2.666 -15.272 17.625 Atomic orbital electron populations 1.22165 0.72098 1.05511 1.04785 1.48752 1.07918 1.03374 1.56523 1.22768 0.90592 0.94461 1.00199 1.19752 0.94719 0.93552 1.16755 1.19970 0.95777 1.01283 0.91343 1.21665 0.79713 0.77304 0.92917 1.90681 1.55351 1.53077 1.48427 1.48573 1.28017 1.49881 1.08206 1.21943 0.90967 0.99452 0.89472 1.21860 0.96397 1.01190 0.97198 1.21517 0.98683 0.99517 0.94654 1.18901 0.91571 0.93830 0.93796 0.99805 1.21544 1.17703 1.26567 0.91853 0.92071 1.25897 0.94989 0.94826 1.03277 1.70105 1.24239 1.31173 1.29947 0.85640 0.78404 0.78712 0.79107 1.19072 1.21612 1.19268 1.21581 0.98642 0.97545 0.81860 1.24004 0.95388 0.95536 0.99061 1.77204 1.02335 1.09976 1.26570 0.88715 0.89713 0.87316 0.78051 0.86161 0.85009 0.86315 0.90320 0.87747 0.93046 0.92585 0.93353 0.93312 0.95080 0.91043 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 11.47 127.77 1.47 2.89 16 2 N -0.38 -9.93 4.01 -369.56 -1.48 -11.41 16 3 C 0.07 1.66 11.40 83.54 0.95 2.61 16 4 C -0.24 -6.71 4.59 -20.15 -0.09 -6.80 16 5 C -0.04 -1.07 4.53 29.10 0.13 -0.94 16 6 C 0.49 19.20 7.69 87.66 0.67 19.87 16 7 O -0.59 -30.61 15.45 -3.02 -0.05 -30.65 16 8 N -0.61 -23.69 2.98 -819.66 -2.44 -26.13 16 9 C 0.10 2.66 6.31 86.22 0.54 3.20 16 10 C -0.13 -3.59 6.07 30.53 0.19 -3.40 16 11 C -0.11 -4.06 5.11 30.62 0.16 -3.90 16 12 C 0.04 1.95 2.25 -11.45 -0.03 1.93 16 13 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 14 C -0.54 -30.17 8.56 25.60 0.22 -29.95 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.53 5.30 84.65 0.45 0.98 16 17 N -0.92 -57.19 11.39 21.45 0.24 -56.94 16 18 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.13 6.37 5.40 86.38 0.47 6.83 16 23 C 0.05 1.41 11.96 85.23 1.02 2.43 16 24 N -0.34 -10.90 12.58 -57.03 -0.72 -11.62 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.20 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.12 2.39 7.68 -2.39 -0.02 2.37 16 30 H 0.13 2.19 7.95 -2.39 -0.02 2.17 16 31 H 0.12 1.99 5.94 -2.39 -0.01 1.98 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.07 4.36 5.13 -2.39 -0.01 4.35 16 40 H 0.19 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -83.72 328.21 4.75 -78.97 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.02 Total: 14.97 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 6.15 Total: -4.23 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.40 Total: -106.11 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -83.72 4.75 -78.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.090 kcal (2) G-P(sol) polarization free energy of solvation -83.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds