Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00157 * 2 1 4 4 H 1.48497 * 109.46884 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46797 * 300.00051 * 3 2 1 6 6 H 1.48494 * 109.47089 * 60.00131 * 3 2 1 7 7 C 1.37875 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00339 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50055 * 59.93728 * 9 7 2 11 11 C 1.53048 * 109.49951 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53915 * 181.31732 * 11 9 7 13 13 C 1.53195 * 109.31291 * 298.63586 * 12 11 9 14 14 N 1.46930 * 108.77622 * 54.63519 * 13 12 11 15 15 C 1.34769 * 120.62825 * 126.36947 * 14 13 12 16 16 O 1.21288 * 119.99633 * 180.02562 * 15 14 13 17 17 C 1.50690 * 120.00457 * 0.02562 * 15 14 13 18 18 C 1.50705 * 109.47609 * 179.97438 * 17 15 14 19 19 C 1.29439 * 117.96112 * 94.99340 * 18 17 15 20 20 C 1.50068 * 124.07470 * 180.47083 * 19 18 17 21 21 C 1.53025 * 110.03748 * 342.92034 * 20 19 18 22 22 C 1.53079 * 108.59654 * 49.47398 * 21 20 19 23 23 C 1.50068 * 117.96030 * 274.98072 * 18 17 15 24 24 C 1.46930 * 118.73743 * 306.64295 * 14 13 12 25 25 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.45998 * 61.29415 * 11 9 7 27 27 H 1.09000 * 109.44360 * 301.32742 * 11 9 7 28 28 H 1.08992 * 109.49840 * 178.68518 * 12 11 9 29 29 H 1.09005 * 109.50022 * 58.58542 * 12 11 9 30 30 H 1.08997 * 109.58534 * 294.84784 * 13 12 11 31 31 H 1.08996 * 109.70409 * 174.49289 * 13 12 11 32 32 H 1.09003 * 109.47415 * 60.00085 * 17 15 14 33 33 H 1.08997 * 109.47428 * 300.00232 * 17 15 14 34 34 H 1.07995 * 117.96212 * 0.45672 * 19 18 17 35 35 H 1.09002 * 109.35724 * 103.06001 * 20 19 18 36 36 H 1.08998 * 109.35998 * 222.78642 * 20 19 18 37 37 H 1.08990 * 109.64476 * 169.04805 * 21 20 19 38 38 H 1.09003 * 109.64270 * 289.68198 * 21 20 19 39 39 H 1.08997 * 109.68954 * 172.84183 * 22 21 20 40 40 H 1.08998 * 109.80937 * 52.27979 * 22 21 20 41 41 H 1.08992 * 109.35733 * 283.09554 * 23 18 17 42 42 H 1.09000 * 109.35971 * 42.82103 * 23 18 17 43 43 H 1.09000 * 109.58674 * 173.14336 * 24 14 13 44 44 H 1.09004 * 109.58542 * 293.57162 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6236 -2.5571 -0.8890 11 6 2.2449 -3.6630 0.0005 12 6 1.4809 -4.9886 -0.0326 13 6 0.6056 -5.1003 1.2196 14 7 -0.2530 -3.9110 1.3042 15 6 -1.5894 -4.0361 1.4258 16 8 -2.2873 -3.0465 1.4941 17 6 -2.2165 -5.4053 1.4767 18 6 -3.7110 -5.2687 1.6146 19 6 -4.4260 -5.3073 0.5363 20 6 -5.9206 -5.1750 0.5134 21 6 -6.4899 -5.4160 1.9132 22 6 -5.7080 -4.5592 2.9123 23 6 -4.2775 -5.0966 2.9935 24 6 0.3725 -2.5827 1.2475 25 1 -0.4849 0.8400 -0.0004 26 1 2.8561 -3.6185 0.9019 27 1 2.8869 -3.5918 -0.8775 28 1 2.1895 -5.8164 -0.0562 29 1 0.8506 -5.0232 -0.9213 30 1 1.2394 -5.1571 2.1046 31 1 -0.0143 -5.9946 1.1561 32 1 -1.8218 -5.9542 2.3319 33 1 -1.9838 -5.9460 0.5593 34 1 -3.9151 -5.4430 -0.4054 35 1 -6.1895 -4.1721 0.1817 36 1 -6.3377 -5.9079 -0.1772 37 1 -7.5416 -5.1309 1.9352 38 1 -6.3870 -6.4693 2.1743 39 1 -6.1780 -4.6188 3.8939 40 1 -5.6914 -3.5225 2.5762 41 1 -4.2816 -6.0590 3.5051 42 1 -3.6607 -4.3929 3.5524 43 1 -0.4010 -1.8162 1.1999 44 1 0.9870 -2.4300 2.1349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = -66.989207 kcal Electronic energy + Delta-G solvation = -22253.940426 eV Core-core repulsion = 19169.250309 eV Total energy + Delta-G solvation = -3084.690117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14423 -39.40715 -38.13197 -35.33332 -33.87570 -33.29907 -31.64172 -31.54447 -28.72048 -26.91822 -25.74126 -24.13337 -23.44014 -22.66626 -21.34909 -19.68466 -18.56830 -18.47843 -17.74549 -16.95367 -16.60514 -16.26967 -16.04435 -15.25335 -15.14927 -14.88969 -14.63889 -14.59501 -14.42427 -14.16425 -13.75088 -13.51915 -13.41437 -13.08595 -12.99730 -12.92582 -12.64657 -12.57033 -12.28070 -12.22201 -11.81285 -11.65223 -11.63899 -11.31275 -11.10130 -11.06206 -10.94275 -10.64435 -10.52499 -9.61615 -9.36467 -8.13062 -6.30684 1.28816 1.37669 1.38837 1.51180 1.81898 2.35423 2.44147 3.15399 3.67190 3.80792 3.87107 4.07454 4.09905 4.18502 4.29673 4.35308 4.36606 4.46736 4.55569 4.60498 4.68983 4.73063 4.76079 4.78652 4.83031 4.89377 5.00401 5.04382 5.09647 5.10478 5.20313 5.25618 5.28607 5.33275 5.37349 5.48407 5.54243 5.66565 5.77315 5.89397 6.00383 6.13928 6.32030 6.74841 6.83220 7.38856 7.44053 8.90369 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.004612 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.530737 B = 6070.281195 C = 6934.563032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.037 3.963 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.102 3.898 14 N -0.615 5.615 15 C 0.496 3.504 16 O -0.590 6.590 17 C -0.098 4.098 18 C -0.111 4.111 19 C -0.161 4.161 20 C -0.089 4.089 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.078 4.078 24 C 0.126 3.874 25 H 0.259 0.741 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 -17.403 4.517 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.018 3.982 10 H 0.001 0.999 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.019 4.019 14 N -0.347 5.347 15 C 0.285 3.715 16 O -0.471 6.471 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.180 4.180 20 C -0.126 4.126 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.115 4.115 24 C 0.003 3.997 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.027 -16.780 4.556 18.754 hybrid contribution 0.557 1.803 -0.337 1.917 sum -6.469 -14.978 4.220 16.852 Atomic orbital electron populations 1.70112 1.07512 1.27139 1.50802 1.25920 0.95540 1.03036 0.94588 0.85497 0.79327 0.79363 0.77453 1.18278 1.20797 1.20864 1.21573 0.93298 0.91593 1.50974 0.91981 1.18836 0.93147 0.93904 0.92298 0.99859 1.21514 0.97641 0.94363 1.00804 1.21918 0.99066 0.98011 0.97511 1.22028 0.93838 0.87223 0.98849 1.48587 1.06361 1.08551 1.71198 1.21468 0.81857 0.92445 0.75716 1.90684 1.62333 1.42138 1.51916 1.20922 0.93692 0.92880 1.06204 1.20515 0.93368 1.01036 0.96272 1.22064 0.96993 1.01711 0.97183 1.20460 0.91796 1.01656 0.98697 1.21520 0.99325 1.00513 0.93545 1.21540 0.95184 0.98740 1.00401 1.20356 0.96156 1.01497 0.93511 1.21535 0.97096 0.83408 0.97651 0.93226 0.92517 0.93120 0.87668 0.93138 0.90281 0.86792 0.85761 0.86786 0.88674 0.92360 0.89341 0.90521 0.90311 0.90104 0.94444 0.88585 0.93384 0.90825 0.95027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.30 11.39 21.45 0.24 -57.05 16 2 C 0.01 0.48 5.30 84.65 0.45 0.93 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 1.93 2.24 -11.60 -0.03 1.90 16 10 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 11 C -0.11 -4.11 5.11 30.62 0.16 -3.96 16 12 C -0.13 -3.69 6.08 30.67 0.19 -3.51 16 13 C 0.10 2.82 6.35 86.36 0.55 3.37 16 14 N -0.61 -24.73 2.98 -819.73 -2.44 -27.17 16 15 C 0.50 20.11 7.69 87.66 0.67 20.78 16 16 O -0.59 -30.78 15.45 -3.05 -0.05 -30.82 16 17 C -0.10 -2.63 4.05 29.10 0.12 -2.51 16 18 C -0.11 -3.10 4.33 -15.09 -0.07 -3.17 16 19 C -0.16 -4.39 9.37 27.04 0.25 -4.14 16 20 C -0.09 -2.01 6.13 29.66 0.18 -1.83 16 21 C -0.11 -2.13 5.98 30.63 0.18 -1.94 16 22 C -0.12 -2.83 6.00 30.63 0.18 -2.64 16 23 C -0.08 -1.97 5.79 29.66 0.17 -1.79 16 24 C 0.13 6.45 5.38 86.22 0.46 6.91 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.19 5.93 -2.39 -0.01 2.18 16 32 H 0.12 2.50 7.91 -2.39 -0.02 2.48 16 33 H 0.11 2.55 7.35 -2.39 -0.02 2.54 16 34 H 0.10 2.60 7.74 -2.91 -0.02 2.58 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 4.55 5.12 -2.39 -0.01 4.54 16 44 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -75.59 341.24 4.43 -71.16 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.95 Total: 18.27 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 3.70 Total: -21.56 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.20 Total: -84.22 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.59 4.43 -71.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.171 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds