Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40084 * 126.03423 * 2 1 4 4 C 1.30838 * 108.20357 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20135 * 359.77894 * 4 3 2 6 6 C 1.50699 * 126.04105 * 180.23446 * 5 4 3 7 7 C 1.53007 * 117.49687 * 8.77183 * 6 5 4 8 8 C 1.52994 * 60.00101 * 252.50870 * 7 6 5 9 9 C 1.34946 * 126.03533 * 180.02562 * 2 1 3 10 10 C 1.50699 * 126.13247 * 359.93918 * 9 2 1 11 11 N 1.46499 * 109.46700 * 90.02392 * 10 9 2 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46956 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99792 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99859 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47323 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46790 * 120.00073 * 20 18 16 23 23 H 1.48501 * 109.47364 * 240.00102 * 20 18 16 24 24 H 1.08999 * 109.47153 * 269.97657 * 1 2 3 25 25 H 1.08993 * 109.47174 * 29.98057 * 1 2 3 26 26 H 1.09004 * 109.46695 * 149.97946 * 1 2 3 27 27 H 1.08001 * 125.90203 * 179.97438 * 4 3 2 28 28 H 1.09001 * 115.55478 * 154.47569 * 6 5 4 29 29 H 1.09000 * 117.49974 * 0.02562 * 7 6 5 30 30 H 1.09002 * 117.49667 * 145.01929 * 7 6 5 31 31 H 1.09000 * 117.50676 * 252.51267 * 8 7 6 32 32 H 1.09007 * 117.50022 * 107.48540 * 8 7 6 33 33 H 1.08998 * 109.46743 * 330.02868 * 10 9 2 34 34 H 1.08994 * 109.47542 * 210.02727 * 10 9 2 35 35 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 36 36 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 37 37 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 38 38 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 39 39 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 40 40 H 0.97001 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0042 6 6 4.7680 -1.5452 0.0103 7 6 6.1235 -0.8668 0.2184 8 6 5.7424 -1.4073 -1.1612 9 6 2.2589 -1.0913 -0.0005 10 6 1.7974 -2.5258 0.0002 11 7 1.6473 -2.9910 -1.3809 12 6 1.2409 -4.2524 -1.6267 13 8 0.9991 -5.0021 -0.7045 14 6 1.0806 -4.7290 -3.0473 15 6 0.6121 -6.1856 -3.0466 16 6 0.4511 -6.6621 -4.4672 17 1 0.6615 -5.9928 -5.2884 18 6 0.0353 -7.9524 -4.7186 19 7 -0.2214 -8.7671 -3.7187 20 14 -0.1649 -8.5428 -6.4796 21 1 0.1836 -7.4420 -7.4134 22 1 0.7361 -9.6987 -6.7195 23 1 -1.5728 -8.9572 -6.7058 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 4.4054 1.3711 -0.0011 28 1 4.6314 -2.5389 0.4370 29 1 6.1297 0.2151 0.3514 30 1 6.8789 -1.4140 0.7823 31 1 6.2470 -2.3102 -1.5050 32 1 5.4979 -0.6810 -1.9364 33 1 0.8392 -2.5989 0.5144 34 1 2.5335 -3.1441 0.5139 35 1 1.8403 -2.3913 -2.1184 36 1 0.3418 -4.1104 -3.5568 37 1 2.0365 -4.6547 -3.5656 38 1 1.3505 -6.8045 -2.5369 39 1 -0.3440 -6.2595 -2.5284 40 1 -0.5136 -9.6750 -3.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598211065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = 29.852933 kcal Electronic energy + Delta-G solvation = -20844.132978 eV Core-core repulsion = 17660.101907 eV Total energy + Delta-G solvation = -3184.031070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.51103 -40.60019 -37.92269 -36.18178 -35.51722 -33.95247 -33.08511 -31.71661 -28.37334 -27.69710 -26.63154 -23.89437 -23.50757 -23.11701 -21.46825 -21.16008 -20.34127 -18.84786 -17.90868 -17.38816 -16.88039 -16.76444 -16.46909 -16.32132 -16.07654 -15.23504 -15.02742 -14.89588 -14.63174 -14.17481 -13.93043 -13.69007 -13.50317 -13.27951 -13.18544 -12.84180 -12.75606 -12.44018 -12.27160 -11.91369 -11.79979 -11.62923 -11.51346 -11.27474 -11.17310 -10.92249 -10.56555 -10.34321 -10.18126 -9.18985 -8.16926 -6.30414 0.60148 1.43482 1.44339 1.48612 1.57612 1.62530 1.69216 2.33969 2.47648 3.15611 3.16449 3.36968 3.51447 3.88330 4.03197 4.07773 4.19175 4.22740 4.33007 4.35459 4.37568 4.48428 4.57116 4.57450 4.65556 4.75531 4.88822 5.06620 5.08727 5.16432 5.31290 5.35661 5.36186 5.52400 5.61980 5.65677 5.87352 5.92381 6.19376 6.51398 6.63380 6.88235 7.28132 7.39855 8.95772 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.003390 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.251657 B = 8258.720116 C = 8824.619787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.368 5.368 3 N -0.311 5.311 4 C 0.049 3.951 5 C -0.184 4.184 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.172 4.172 9 C 0.064 3.936 10 C 0.191 3.809 11 N -0.713 5.713 12 C 0.519 3.481 13 O -0.582 6.582 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.542 4.542 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.972 3.028 21 H -0.254 1.254 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.206 0.794 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.413 0.587 36 H 0.104 0.896 37 H 0.103 0.897 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 21.738 6.249 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.151 5.151 3 N -0.133 5.133 4 C -0.136 4.136 5 C -0.196 4.196 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.209 4.209 9 C -0.064 4.064 10 C 0.066 3.934 11 N -0.367 5.367 12 C 0.307 3.693 13 O -0.462 6.462 14 C -0.158 4.158 15 C 0.004 3.996 16 C -0.580 4.580 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.177 1.177 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.223 0.777 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.702 22.080 6.963 24.400 hybrid contribution 0.211 -1.215 -0.695 1.415 sum 7.913 20.866 6.268 23.179 Atomic orbital electron populations 1.22147 0.72635 1.05562 1.04681 1.48638 1.07468 1.02753 1.56212 1.77343 1.02377 1.08610 1.24939 1.24088 0.95513 0.94413 0.99594 1.19276 0.92611 0.93580 1.14173 1.20221 0.87742 0.98450 1.04969 1.23061 0.96266 1.01357 0.99138 1.23030 1.02411 1.03519 0.91936 1.20589 0.91313 0.89598 1.04889 1.19582 1.01937 0.87270 0.84610 1.45897 1.69512 1.13014 1.08304 1.21267 0.74724 0.80978 0.92294 1.90675 1.51498 1.56094 1.47895 1.21631 1.04172 0.98535 0.91484 1.18700 0.94481 0.90876 0.95558 1.21744 1.45123 0.97878 0.93206 0.90721 1.26101 0.94991 0.97227 1.02025 1.70176 1.47032 1.07011 1.33464 0.85305 0.77622 0.78509 0.78993 1.17711 1.20674 1.20675 0.89364 0.87954 0.88826 0.77716 0.88174 0.87479 0.87817 0.88567 0.88592 0.90591 0.89615 0.75054 0.87800 0.87853 0.99747 0.99689 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.10 127.77 1.42 2.74 16 2 N -0.37 -7.59 4.01 -356.02 -1.43 -9.02 16 3 N -0.31 -6.94 12.58 -57.02 -0.72 -7.66 16 4 C 0.05 0.92 11.35 85.24 0.97 1.89 16 5 C -0.18 -3.68 5.76 -20.14 -0.12 -3.80 16 6 C -0.09 -1.70 5.95 -11.54 -0.07 -1.76 16 7 C -0.16 -2.16 10.02 30.59 0.31 -1.85 16 8 C -0.17 -2.68 10.23 30.59 0.31 -2.37 16 9 C 0.06 1.36 6.30 41.41 0.26 1.62 16 10 C 0.19 4.52 5.47 85.63 0.47 4.99 16 11 N -0.71 -18.38 5.55 -466.79 -2.59 -20.97 16 12 C 0.52 18.98 7.83 87.65 0.69 19.67 16 13 O -0.58 -27.17 15.98 -3.04 -0.05 -27.22 16 14 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 15 C 0.04 2.26 4.26 29.85 0.13 2.39 16 16 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 17 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 18 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 19 N -0.94 -58.85 13.29 21.45 0.28 -58.56 16 20 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 21 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.31 7.66 -2.38 -0.02 1.29 16 27 H 0.21 2.56 7.20 -2.91 -0.02 2.54 16 28 H 0.10 1.99 7.41 -2.39 -0.02 1.97 16 29 H 0.11 1.13 6.98 -2.39 -0.02 1.12 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.08 1.82 7.72 -2.39 -0.02 1.80 16 34 H 0.09 2.17 7.32 -2.39 -0.02 2.15 16 35 H 0.41 8.68 8.46 -92.70 -0.78 7.90 16 36 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 38 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 39 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.18 342.74 3.01 -73.17 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.26 Total: 15.29 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.23 Total: -10.98 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.45 Total: -96.21 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -76.18 3.01 -73.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598211065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.024 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds