Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 C 1.50706 * 109.46563 * 66.04606 * 4 2 1 6 6 C 1.38304 * 119.96224 * 269.72484 * 5 4 2 7 7 C 1.38268 * 120.15072 * 179.72965 * 6 5 4 8 8 C 1.38123 * 120.06858 * 0.54713 * 7 6 5 9 9 C 1.38889 * 119.92790 * 359.73331 * 8 7 6 10 10 N 1.39678 * 120.07427 * 180.02562 * 9 8 7 11 11 C 1.46500 * 120.00192 * 359.97011 * 10 9 8 12 12 C 1.50697 * 109.47253 * 180.02562 * 11 10 9 13 13 O 1.21296 * 120.00048 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00325 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00490 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99741 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99985 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99728 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00168 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46790 * 90.00339 * 19 17 15 21 21 H 1.48498 * 109.46941 * 210.00290 * 19 17 15 22 22 H 1.48503 * 109.46880 * 330.00128 * 19 17 15 23 23 C 1.38077 * 119.96077 * 90.00759 * 5 4 2 24 24 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 28 28 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 29 29 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 30 30 H 1.08994 * 109.47410 * 186.04624 * 4 2 1 31 31 H 1.08999 * 109.47216 * 306.04953 * 4 2 1 32 32 H 1.08006 * 119.92837 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.96416 * 180.27565 * 7 6 5 34 34 H 1.08000 * 120.03603 * 179.74491 * 8 7 6 35 35 H 0.96996 * 120.00019 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47039 * 300.00397 * 11 10 9 37 37 H 1.08998 * 109.46801 * 60.00380 * 11 10 9 38 38 H 0.97010 * 119.99577 * 359.97438 * 14 12 11 39 39 H 0.96999 * 120.00317 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.04007 * 359.96678 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6370 -2.2204 0.9727 6 6 0.4531 -2.7040 1.4994 7 6 0.1176 -4.0365 1.3456 8 6 0.9699 -4.8917 0.6748 9 6 2.1623 -4.4107 0.1497 10 7 3.0262 -5.2727 -0.5297 11 6 2.6753 -6.6862 -0.6885 12 6 3.7664 -7.3921 -1.4514 13 8 4.7416 -6.7753 -1.8254 14 7 3.6588 -8.7088 -1.7183 15 6 4.6517 -9.3511 -2.4120 16 1 5.5200 -8.8018 -2.7449 17 6 4.5404 -10.7084 -2.6875 18 7 5.4923 -11.3241 -3.3519 19 14 3.0382 -11.6582 -2.1123 20 1 1.9909 -11.6122 -3.1640 21 1 3.4157 -13.0704 -1.8510 22 1 2.5141 -11.0469 -0.8645 23 6 2.4936 -3.0700 0.3011 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7044 1.8723 0.9233 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 3.0798 -0.6610 1.1755 31 1 1.5612 -0.3873 2.0628 32 1 -0.2128 -2.0384 2.0286 33 1 -0.8097 -4.4099 1.7542 34 1 0.7093 -5.9333 0.5586 35 1 3.8585 -4.9356 -0.8963 36 1 2.5637 -7.1454 0.2938 37 1 1.7367 -6.7681 -1.2366 38 1 2.8791 -9.2021 -1.4189 39 1 5.4146 -12.2716 -3.5447 40 1 3.4199 -2.6926 -0.1064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = 1.625248 kcal Electronic energy + Delta-G solvation = -20488.026550 eV Core-core repulsion = 17302.771436 eV Total energy + Delta-G solvation = -3185.255114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69496 -38.58975 -37.31822 -35.01098 -34.00468 -31.81836 -31.51711 -29.97394 -27.80639 -26.81696 -26.72319 -24.19662 -22.78373 -21.88622 -20.40079 -19.49736 -18.55357 -17.23365 -16.20950 -15.71243 -15.62578 -15.48054 -15.24604 -14.90237 -14.75009 -14.55690 -13.86230 -13.55676 -13.17275 -13.07105 -12.82477 -12.55110 -12.50016 -12.23249 -12.13519 -11.99801 -11.93197 -11.70119 -11.26073 -11.23902 -10.76052 -10.66365 -10.07147 -9.91417 -9.69905 -8.76592 -8.75841 -8.50414 -8.31421 -7.18723 -6.41213 -3.93856 1.50058 1.75238 2.96674 3.01368 3.10060 3.55428 3.59334 3.71716 4.02033 4.17895 4.55970 4.71728 4.87642 4.98331 5.10122 5.12772 5.15892 5.24841 5.32897 5.37963 5.48331 5.50851 5.53446 5.61685 5.72294 5.73283 5.76155 5.78259 5.95288 6.11562 6.48058 6.61741 6.68725 6.76691 6.86301 6.99338 7.40726 7.57324 7.97657 8.09061 8.45178 8.81663 9.29194 9.63700 10.71191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035490 B = 0.003003 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.770400 B = 9320.525508 C = 9861.430126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.024 3.976 4 C 0.094 3.906 5 C -0.034 4.034 6 C -0.185 4.185 7 C -0.071 4.071 8 C -0.205 4.205 9 C 0.228 3.772 10 N -0.725 5.725 11 C 0.111 3.889 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.579 5.579 15 C -0.310 4.310 16 H 0.121 0.879 17 C 0.044 3.956 18 N -0.875 5.875 19 Si 0.880 3.120 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.268 1.268 23 C -0.176 4.176 24 H 0.065 0.935 25 H 0.022 0.978 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.373 0.627 39 H 0.275 0.725 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 17.909 10.444 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.124 4.124 4 C -0.033 4.033 5 C -0.035 4.035 6 C -0.205 4.205 7 C -0.090 4.090 8 C -0.228 4.228 9 C 0.122 3.878 10 N -0.356 5.356 11 C -0.018 4.018 12 C 0.225 3.775 13 O -0.459 6.459 14 N -0.217 5.217 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.160 4.160 18 N -0.514 5.514 19 Si 0.706 3.294 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.193 1.193 23 C -0.199 4.199 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.206 0.794 39 H 0.086 0.914 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.094 17.668 9.616 23.471 hybrid contribution -1.110 -0.528 0.939 1.547 sum -13.204 17.140 10.555 24.074 Atomic orbital electron populations 1.22495 0.87249 1.03006 1.00117 1.61955 1.08283 1.13346 1.42862 1.22394 1.00908 0.88724 1.00356 1.21065 1.00387 0.90404 0.91441 1.19291 0.94075 0.93837 0.96314 1.20643 0.97899 0.95793 1.06210 1.20768 0.98239 0.93179 0.96822 1.20658 0.95493 1.00325 1.06315 1.17848 0.89782 0.89621 0.90535 1.44496 1.23755 1.06768 1.60576 1.20948 0.97816 0.82748 1.00244 1.19652 0.88898 0.83041 0.85888 1.90550 1.33286 1.65418 1.56695 1.42132 1.20936 1.07889 1.50697 1.19442 1.01034 0.92731 1.30635 0.86141 1.25067 0.97637 0.96370 0.96897 1.69616 1.32328 1.11090 1.38367 0.86659 0.82824 0.80656 0.79238 1.19417 1.19990 1.19325 1.20382 1.01953 0.91569 1.05994 0.91630 0.95926 0.90325 0.95818 0.91260 0.91323 0.89994 0.94066 0.87236 0.86562 0.86272 0.74955 0.90624 0.90601 0.79361 0.91392 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.26 60.07 0.56 0.73 16 2 N -0.54 -5.50 5.01 -252.72 -1.27 -6.76 16 3 C 0.02 0.19 9.57 60.07 0.57 0.77 16 4 C 0.09 0.95 5.12 -4.97 -0.03 0.92 16 5 C -0.03 -0.41 4.88 -104.65 -0.51 -0.92 16 6 C -0.18 -2.07 7.91 -39.55 -0.31 -2.38 16 7 C -0.07 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.20 -2.70 9.31 -39.38 -0.37 -3.06 16 9 C 0.23 3.34 6.65 -83.79 -0.56 2.78 16 10 N -0.73 -11.85 5.70 -59.81 -0.34 -12.19 16 11 C 0.11 1.84 5.39 -5.20 -0.03 1.81 16 12 C 0.44 9.72 7.85 -10.99 -0.09 9.63 16 13 O -0.58 -14.99 15.24 5.54 0.08 -14.90 16 14 N -0.58 -13.41 5.09 -10.96 -0.06 -13.47 16 15 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 16 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 17 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 18 N -0.87 -25.07 13.96 55.50 0.77 -24.30 16 19 Si 0.88 18.83 27.74 -169.99 -4.71 14.12 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 23 C -0.18 -2.40 9.55 -39.38 -0.38 -2.77 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.08 0.78 5.91 -51.93 -0.31 0.47 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 31 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.11 1.03 8.00 -52.48 -0.42 0.61 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.44 6.73 -52.49 -0.35 1.09 16 35 H 0.41 7.25 7.45 -40.82 -0.30 6.95 16 36 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 37 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 38 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 39 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.26 332.98 -8.07 -39.33 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -5.79 Total: 14.50 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.78 Total: -1.34 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.89 Total: -56.72 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.08 Total: -14.90 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.26 -8.07 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.958 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds