Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39893 * 119.99703 * 2 1 4 4 C 1.38895 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.38057 * 119.99683 * 180.02562 * 4 3 2 6 6 C 1.38860 * 120.00191 * 0.27059 * 5 4 3 7 7 N 1.40149 * 119.99538 * 179.70682 * 6 5 4 8 8 C 1.34780 * 120.00171 * 33.30294 * 7 6 5 9 9 O 1.21300 * 119.99446 * 5.28293 * 8 7 6 10 10 C 1.50694 * 120.00208 * 185.27680 * 8 7 6 11 11 H 1.09001 * 109.46884 * 320.00311 * 10 8 7 12 12 N 1.46899 * 109.47405 * 200.00494 * 10 8 7 13 13 C 1.52999 * 109.47120 * 79.99978 * 10 8 7 14 14 C 1.53000 * 109.47142 * 184.99894 * 13 10 8 15 15 C 1.50704 * 109.47213 * 180.02562 * 14 13 10 16 16 H 1.08000 * 119.99739 * 0.02562 * 15 14 13 17 17 C 1.37867 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00013 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00130 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47038 * 90.00257 * 19 17 15 21 21 H 1.48503 * 109.47487 * 210.00279 * 19 17 15 22 22 H 1.48498 * 109.47036 * 330.00299 * 19 17 15 23 23 C 1.38853 * 120.00697 * 359.44881 * 6 5 4 24 24 C 1.38059 * 120.00564 * 0.55461 * 23 6 5 25 25 H 1.08996 * 109.47225 * 60.00002 * 1 2 3 26 26 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46990 * 299.99906 * 1 2 3 28 28 H 0.97003 * 120.00500 * 179.97438 * 2 1 3 29 29 H 1.08001 * 119.99945 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.00190 * 179.97438 * 5 4 3 31 31 H 0.97000 * 119.99986 * 213.31186 * 7 6 5 32 32 H 1.00894 * 111.00172 * 176.04978 * 12 10 8 33 33 H 1.00902 * 110.99280 * 300.00008 * 12 10 8 34 34 H 1.08995 * 109.47433 * 305.00030 * 13 10 8 35 35 H 1.09005 * 109.46863 * 65.00375 * 13 10 8 36 36 H 1.09003 * 109.47370 * 300.00282 * 14 13 10 37 37 H 1.08999 * 109.46993 * 60.00889 * 14 13 10 38 38 H 0.97003 * 120.00356 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99470 * 180.25690 * 23 6 5 40 40 H 1.08004 * 120.00400 * 179.70476 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1644 1.2115 0.0000 4 6 3.5533 1.2117 -0.0005 5 6 4.2434 2.4074 0.0000 6 6 3.5490 3.6099 0.0068 7 7 4.2497 4.8236 0.0135 8 6 5.4315 4.9231 -0.6269 9 8 5.8428 3.9933 -1.2885 10 6 6.2416 6.1893 -0.5211 11 1 5.5757 7.0512 -0.5634 12 7 7.1973 6.2538 -1.6348 13 6 7.0033 6.1980 0.8058 14 6 7.7266 7.5362 0.9699 15 6 8.4774 7.5446 2.2766 16 1 8.4425 6.6815 2.9249 17 6 9.2088 8.6539 2.6443 18 7 9.8644 8.6610 3.7844 19 14 9.2697 10.1464 1.5227 20 1 8.1602 11.0709 1.8683 21 1 10.5685 10.8447 1.6978 22 1 9.1287 9.7102 0.1102 23 6 2.1605 3.6099 0.0014 24 6 1.4700 2.4144 0.0009 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9501 -0.8400 0.0004 29 1 4.0934 0.2764 -0.0005 30 1 5.3234 2.4076 0.0000 31 1 3.8843 5.5920 0.4792 32 1 7.7082 7.1238 -1.6230 33 1 7.8262 5.4649 -1.6176 34 1 6.3017 6.0610 1.6285 35 1 7.7326 5.3878 0.8114 36 1 8.4284 7.6733 0.1472 37 1 6.9974 8.3464 0.9644 38 1 10.3793 9.4414 4.0430 39 1 1.6206 4.5453 0.0025 40 1 0.3900 2.4145 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602550828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -12.950614 kcal Electronic energy + Delta-G solvation = -20654.687837 eV Core-core repulsion = 17468.800666 eV Total energy + Delta-G solvation = -3185.887171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43767 -38.93804 -36.25566 -35.44158 -33.77526 -32.81158 -31.00442 -30.33309 -29.10090 -26.98721 -25.75393 -23.82893 -22.81754 -21.61889 -20.44060 -19.78045 -17.78425 -17.62225 -17.16100 -16.67383 -15.95597 -14.83943 -14.74847 -14.64857 -14.45762 -14.26691 -14.16933 -13.88345 -13.46051 -13.23376 -12.98204 -12.69991 -12.64410 -12.58898 -12.29142 -11.84973 -11.41998 -11.23974 -10.99016 -10.67597 -10.35857 -10.09859 -9.89868 -9.46463 -9.32284 -9.24642 -8.91462 -8.62848 -8.34932 -7.20622 -6.12197 -4.11929 1.39253 1.49878 2.83812 3.16119 3.24545 3.32499 3.33094 3.34124 3.89881 4.37045 4.76311 4.84424 4.92598 4.94724 5.02059 5.15597 5.20666 5.35577 5.37250 5.41103 5.47707 5.56101 5.59041 5.97536 6.02540 6.12316 6.19591 6.29794 6.44651 6.56378 6.63722 6.89410 7.07978 7.19897 7.21922 7.31287 7.51929 7.59001 7.65721 7.76027 8.34650 8.43962 8.91847 9.48885 11.01012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.003061 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.150979 B = 9144.169293 C = 9384.645628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.758 5.758 3 C 0.192 3.808 4 C -0.174 4.174 5 C -0.071 4.071 6 C 0.100 3.900 7 N -0.674 5.674 8 C 0.524 3.476 9 O -0.520 6.520 10 C 0.073 3.927 11 H 0.098 0.902 12 N -0.830 5.830 13 C -0.130 4.130 14 C -0.010 4.010 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.101 4.101 24 C -0.178 4.178 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.399 0.601 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.410 0.590 32 H 0.352 0.648 33 H 0.348 0.652 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 -12.989 -7.956 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.389 5.389 3 C 0.090 3.910 4 C -0.197 4.197 5 C -0.092 4.092 6 C 0.005 3.995 7 N -0.320 5.320 8 C 0.312 3.688 9 O -0.394 6.394 10 C -0.042 4.042 11 H 0.116 0.884 12 N -0.363 5.363 13 C -0.170 4.170 14 C -0.048 4.048 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.539 5.539 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.122 4.122 24 C -0.201 4.201 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.245 0.755 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.932 -13.511 -8.806 24.870 hybrid contribution 0.773 1.004 0.629 1.414 sum -18.159 -12.508 -8.177 23.517 Atomic orbital electron populations 1.21474 0.80536 1.02037 1.00919 1.44394 1.05396 1.05246 1.83903 1.17808 0.91059 0.86244 0.95905 1.20469 0.91771 0.98255 1.09189 1.20935 1.00728 0.90340 0.97214 1.17565 0.90670 0.85820 1.05488 1.43533 1.21801 1.12483 1.54158 1.20943 0.80486 0.90069 0.77285 1.90649 1.69515 1.40394 1.38884 1.21500 0.95331 0.94725 0.92655 0.88386 1.58729 1.24095 1.08811 1.44620 1.22213 0.99284 1.01314 0.94147 1.19576 0.95346 0.91912 0.97948 1.21063 1.29307 1.02626 1.03201 0.91048 1.25046 0.94876 0.98573 0.94985 1.69911 1.31911 1.30218 1.21870 0.86755 0.77535 0.83037 0.81783 1.20263 1.21343 1.18962 1.20640 0.92055 0.98080 1.01382 1.20353 0.99242 0.90571 1.09961 0.93194 0.91158 0.93157 0.76764 0.86083 0.84749 0.75493 0.83337 0.83800 0.91774 0.91951 0.96559 0.96742 0.92618 0.85826 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 9.94 59.85 0.60 1.15 16 2 N -0.76 -6.18 5.90 -65.35 -0.39 -6.57 16 3 C 0.19 2.10 6.66 -83.70 -0.56 1.54 16 4 C -0.17 -2.11 9.89 -39.40 -0.39 -2.50 16 5 C -0.07 -1.02 8.65 -39.42 -0.34 -1.36 16 6 C 0.10 1.36 6.28 -83.60 -0.53 0.83 16 7 N -0.67 -8.98 5.35 -9.81 -0.05 -9.03 16 8 C 0.52 8.40 6.82 -10.99 -0.07 8.33 16 9 O -0.52 -9.76 13.94 5.54 0.08 -9.69 16 10 C 0.07 1.15 3.21 -68.87 -0.22 0.93 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 12 N -0.83 -13.25 8.94 -5.66 -0.05 -13.30 16 13 C -0.13 -2.40 4.78 -26.73 -0.13 -2.53 16 14 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 15 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 19 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 23 C -0.10 -1.14 9.96 -39.42 -0.39 -1.54 16 24 C -0.18 -1.90 9.31 -39.41 -0.37 -2.27 16 25 H 0.05 0.29 7.95 -51.93 -0.41 -0.12 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.29 7.95 -51.93 -0.41 -0.12 16 28 H 0.40 2.62 8.84 -40.82 -0.36 2.26 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 2.14 6.41 -52.49 -0.34 1.80 16 31 H 0.41 4.34 8.82 -40.82 -0.36 3.98 16 32 H 0.35 5.44 7.55 -39.29 -0.30 5.14 16 33 H 0.35 5.66 8.58 -39.29 -0.34 5.32 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.36 5.93 -51.93 -0.31 0.05 16 37 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.04 6.73 -52.48 -0.35 0.69 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -33.08 332.03 -7.93 -41.01 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.69 Total: 13.53 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.94 Total: -10.73 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.29 Total: -55.46 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.08 -7.93 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602550828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.063 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds