Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39893 * 119.99703 * 2 1 4 4 C 1.38895 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.38057 * 119.99683 * 180.02562 * 4 3 2 6 6 C 1.38860 * 120.00191 * 0.27059 * 5 4 3 7 7 N 1.40149 * 119.99538 * 179.70682 * 6 5 4 8 8 C 1.34780 * 120.00171 * 33.30294 * 7 6 5 9 9 O 1.21300 * 119.99446 * 5.28293 * 8 7 6 10 10 C 1.50694 * 120.00208 * 185.27680 * 8 7 6 11 11 H 1.09001 * 109.46884 * 320.00311 * 10 8 7 12 12 N 1.46899 * 109.47405 * 200.00494 * 10 8 7 13 13 C 1.52999 * 109.47120 * 79.99978 * 10 8 7 14 14 C 1.53000 * 109.47142 * 184.99894 * 13 10 8 15 15 C 1.50704 * 109.47213 * 180.02562 * 14 13 10 16 16 H 1.08000 * 119.99739 * 0.02562 * 15 14 13 17 17 C 1.37867 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00013 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00130 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47038 * 90.00257 * 19 17 15 21 21 H 1.48503 * 109.47487 * 210.00279 * 19 17 15 22 22 H 1.48498 * 109.47036 * 330.00299 * 19 17 15 23 23 C 1.38853 * 120.00697 * 359.44881 * 6 5 4 24 24 C 1.38059 * 120.00564 * 0.55461 * 23 6 5 25 25 H 1.08996 * 109.47225 * 60.00002 * 1 2 3 26 26 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46990 * 299.99906 * 1 2 3 28 28 H 0.97003 * 120.00500 * 179.97438 * 2 1 3 29 29 H 1.08001 * 119.99945 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.00190 * 179.97438 * 5 4 3 31 31 H 0.97000 * 119.99986 * 213.31186 * 7 6 5 32 32 H 1.00894 * 111.00172 * 176.04978 * 12 10 8 33 33 H 1.00902 * 110.99280 * 300.00008 * 12 10 8 34 34 H 1.08995 * 109.47433 * 305.00030 * 13 10 8 35 35 H 1.09005 * 109.46863 * 65.00375 * 13 10 8 36 36 H 1.09003 * 109.47370 * 300.00282 * 14 13 10 37 37 H 1.08999 * 109.46993 * 60.00889 * 14 13 10 38 38 H 0.97003 * 120.00356 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99470 * 180.25690 * 23 6 5 40 40 H 1.08004 * 120.00400 * 179.70476 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1644 1.2115 0.0000 4 6 3.5533 1.2117 -0.0005 5 6 4.2434 2.4074 0.0000 6 6 3.5490 3.6099 0.0068 7 7 4.2497 4.8236 0.0135 8 6 5.4315 4.9231 -0.6269 9 8 5.8428 3.9933 -1.2885 10 6 6.2416 6.1893 -0.5211 11 1 5.5757 7.0512 -0.5634 12 7 7.1973 6.2538 -1.6348 13 6 7.0033 6.1980 0.8058 14 6 7.7266 7.5362 0.9699 15 6 8.4774 7.5446 2.2766 16 1 8.4425 6.6815 2.9249 17 6 9.2088 8.6539 2.6443 18 7 9.8644 8.6610 3.7844 19 14 9.2697 10.1464 1.5227 20 1 8.1602 11.0709 1.8683 21 1 10.5685 10.8447 1.6978 22 1 9.1287 9.7102 0.1102 23 6 2.1605 3.6099 0.0014 24 6 1.4700 2.4144 0.0009 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9501 -0.8400 0.0004 29 1 4.0934 0.2764 -0.0005 30 1 5.3234 2.4076 0.0000 31 1 3.8843 5.5920 0.4792 32 1 7.7082 7.1238 -1.6230 33 1 7.8262 5.4649 -1.6176 34 1 6.3017 6.0610 1.6285 35 1 7.7326 5.3878 0.8114 36 1 8.4284 7.6733 0.1472 37 1 6.9974 8.3464 0.9644 38 1 10.3793 9.4414 4.0430 39 1 1.6206 4.5453 0.0025 40 1 0.3900 2.4145 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602550828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -38.412984 kcal Electronic energy + Delta-G solvation = -20655.791969 eV Core-core repulsion = 17468.800666 eV Total energy + Delta-G solvation = -3186.991303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54342 -39.92524 -37.39225 -36.68343 -34.85014 -34.68494 -32.09152 -31.88615 -30.02064 -28.35048 -26.68734 -25.30993 -23.72585 -22.78088 -21.94382 -20.98994 -19.18268 -18.66035 -18.41155 -18.08584 -16.87038 -16.29114 -15.96188 -15.91028 -15.86660 -15.28018 -15.10561 -14.92009 -14.72684 -14.57734 -14.44655 -14.11850 -13.60187 -13.46634 -13.40729 -13.07244 -12.84534 -12.66540 -12.17838 -12.04057 -11.85196 -11.68683 -11.59176 -11.40295 -10.77543 -10.76729 -10.15313 -9.85757 -9.66898 -8.29399 -8.04546 -6.35178 0.48769 0.52840 1.38975 1.41385 1.52481 1.64197 2.09999 2.37001 2.65600 2.97073 3.06245 3.68922 3.73165 4.00010 4.08102 4.09148 4.17633 4.42247 4.46862 4.57135 4.58862 4.70403 4.72790 4.72996 4.94561 4.96845 5.07430 5.14026 5.34554 5.36683 5.46569 5.50460 5.60778 5.63279 5.95584 6.06177 6.25521 6.45396 6.48586 6.52607 6.73540 6.87311 7.20622 7.29689 8.87499 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.003061 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.150979 B = 9144.169293 C = 9384.645628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.754 5.754 3 C 0.194 3.806 4 C -0.188 4.188 5 C -0.094 4.094 6 C 0.070 3.930 7 N -0.660 5.660 8 C 0.522 3.478 9 O -0.554 6.554 10 C 0.084 3.916 11 H 0.125 0.875 12 N -0.830 5.830 13 C -0.118 4.118 14 C -0.006 4.006 15 C -0.535 4.535 16 H 0.025 0.975 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.290 1.290 22 H -0.237 1.237 23 C -0.093 4.093 24 C -0.181 4.181 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.406 0.594 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.423 0.577 32 H 0.356 0.644 33 H 0.345 0.655 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.150 0.850 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.325 -12.303 -9.641 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.384 5.384 3 C 0.090 3.910 4 C -0.211 4.211 5 C -0.115 4.115 6 C -0.025 4.025 7 N -0.306 5.306 8 C 0.309 3.691 9 O -0.431 6.431 10 C -0.031 4.031 11 H 0.143 0.857 12 N -0.362 5.362 13 C -0.158 4.158 14 C -0.043 4.043 15 C -0.573 4.573 16 H 0.043 0.957 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.217 1.217 22 H -0.160 1.160 23 C -0.113 4.113 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.240 0.760 29 H 0.148 0.852 30 H 0.125 0.875 31 H 0.261 0.739 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.168 0.832 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.758 -12.856 -10.487 27.362 hybrid contribution 1.545 0.602 1.245 2.074 sum -20.213 -12.254 -9.242 25.380 Atomic orbital electron populations 1.21681 0.78813 1.03808 1.01197 1.44567 1.06552 1.04653 1.82652 1.17956 0.90739 0.87613 0.94660 1.20579 0.92739 0.97961 1.09782 1.20872 0.99680 0.91897 0.99038 1.17757 0.91729 0.85376 1.07628 1.43366 1.20959 1.13083 1.53231 1.20963 0.81202 0.89590 0.77305 1.90638 1.70504 1.41315 1.40653 1.21414 0.95302 0.95747 0.90634 0.85744 1.58749 1.24182 1.08906 1.44358 1.22023 0.98881 0.98758 0.96177 1.19506 0.95539 0.94248 0.95032 1.21446 1.29891 1.01079 1.04899 0.95680 1.26106 0.94348 1.02459 0.96675 1.70087 1.33424 1.31536 1.24402 0.85582 0.77623 0.78296 0.80674 1.18913 1.21655 1.15983 1.20922 0.91035 0.99597 0.99790 1.20695 1.00538 0.90106 1.09087 0.92866 0.88837 0.92758 0.75954 0.85162 0.87492 0.73928 0.82860 0.84177 0.91761 0.94025 0.95536 0.94915 0.92533 0.83241 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 9.94 127.77 1.27 2.03 16 2 N -0.75 -10.58 5.90 -360.66 -2.13 -12.70 16 3 C 0.19 3.94 6.66 38.17 0.25 4.19 16 4 C -0.19 -4.55 9.89 22.38 0.22 -4.33 16 5 C -0.09 -2.78 8.65 22.38 0.19 -2.58 16 6 C 0.07 1.87 6.28 38.11 0.24 2.11 16 7 N -0.66 -17.06 5.35 -303.34 -1.62 -18.68 16 8 C 0.52 16.54 6.82 87.65 0.60 17.13 16 9 O -0.55 -21.22 13.94 -3.09 -0.04 -21.27 16 10 C 0.08 2.53 3.21 44.17 0.14 2.67 16 11 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 12 N -0.83 -25.30 8.94 -171.81 -1.54 -26.83 16 13 C -0.12 -4.35 4.78 30.59 0.15 -4.20 16 14 C -0.01 -0.25 3.81 29.85 0.11 -0.13 16 15 C -0.54 -30.08 9.66 25.60 0.25 -29.84 16 16 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 17 C 0.00 0.04 5.47 84.65 0.46 0.50 16 18 N -0.95 -59.54 13.96 21.44 0.30 -59.24 16 19 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 23 C -0.09 -1.92 9.96 22.37 0.22 -1.69 16 24 C -0.18 -3.42 9.31 22.38 0.21 -3.21 16 25 H 0.05 0.45 7.95 -2.39 -0.02 0.43 16 26 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.45 7.95 -2.39 -0.02 0.43 16 28 H 0.41 4.53 8.84 -92.71 -0.82 3.71 16 29 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.11 3.68 6.41 -2.91 -0.02 3.66 16 31 H 0.42 8.22 8.82 -92.71 -0.82 7.40 16 32 H 0.36 10.17 7.55 -89.70 -0.68 9.49 16 33 H 0.35 11.08 8.58 -89.69 -0.77 10.31 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.03 1.09 5.93 -2.39 -0.01 1.08 16 37 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.15 1.98 6.73 -2.91 -0.02 1.96 16 Total: -1.00 -73.97 332.03 -0.87 -74.84 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -2.05 Total: 36.90 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.32 Total: -17.35 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.99 Total: -117.45 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -73.97 -0.87 -74.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602550828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.428 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds